IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2459	 56.45	0	3348508..3349290	+	260	163848062	-	Caur_2511	-	aminoglycoside phosphotransferase
2460	 59.59	0	3349282..3350610	-	442	163848063	-	Caur_2512	-	fumarylacetoacetase
2461	 56.56	0	3352214..3353380	-	388	163848064	-	Caur_2513	-	homogentisate 12-dioxygenase
2462	 57.96	0	3354625..3355428	+	267	163848065	-	Caur_2514	-	hypothetical protein
2463	 58.12	0	3356316..3357005	-	229	163848066	-	Caur_2515	-	abortive infection protein
2464	 52.41	-1	3357471..3358592	-	373	163848067	-	Caur_2516	-	Sulfate transporter/antisigma-factor antagonist STAS
2465	 61.61	+1	3359205..3360173	-	322	163848068	-	Caur_2517	-	prephenate dehydrogenase
2466	 57.00	0	3360198..3360797	-	199	163848069	-	Caur_2518	-	hypothetical protein
2467	 59.45	0	3360790..3361884	-	364	163848070	-	Caur_2519	-	chorismate synthase
2468	 59.14	0	3361908..3363116	-	402	163848071	-	Caur_2520	-	glycosyl transferase group 1
2469	 56.79	0	3363393..3364577	-	394	163848072	-	Caur_2521	-	SAM-dependent methyltransferase
2470	 57.17	0	3364607..3365848	-	413	163848073	-	Caur_2522	-	nucleotidyl transferase
2471	 54.55	0	3365933..3367186	-	417	163848074	-	Caur_2523	-	glucose-1-phosphate adenylyltransferase
2472	 53.46	0	3367723..3368199	+	158	163848075	-	Caur_2524	-	hypothetical protein
2473	 45.65	-2	3368203..3369087	+	294	163848076	-	Caur_2525	-	hypothetical protein
2474	 46.07	-2	3369107..3370009	+	300	163848077	-	Caur_2526	-	D12 class N6 adenine-specific DNA methyltransferase
2475	 60.02	0	3370132..3371004	+	290	163848078	-	Caur_2527	-	UspA domain-containing protein
2476	 56.91	0	3371009..3371500	-	163	163848079	-	Caur_2528	-	MOSC domain-containing protein
2477	 55.41	0	3371631..3372758	+	375	163848080	-	Caur_2529	-	hypothetical protein
2478	 54.50	0	3372766..3373587	+	273	163848081	-	Caur_2530	-	UspA domain-containing protein
2479	 57.13	0	3373679..3375073	-	464	163848082	-	Caur_2531	-	peptidase S41
2480	 58.02	0	3375211..3376344	+	377	163848083	-	Caur_2532	-	aminotransferase class I and II
2481	 59.17	0	3376341..3377261	+	306	163848084	-	Caur_2533	-	pseudouridine synthase
2482	 53.39	0	3377471..3377854	-	127	163848085	-	Caur_2534	-	hypothetical protein
2483	 54.65	0	3378455..3378712	-	85	163848086	-	Caur_2535	-	hypothetical protein
2484	 55.94	0	3379195..3380769	+	524	163848087	-	Caur_2536	-	alkaline phosphatase
2485	 57.87	0	3381017..3382039	-	340	163848088	-	Caur_2537	-	NMT1/THI5-like domain-containing protein
2486	 58.56	0	3382077..3382865	-	262	163848089	-	Caur_2538	-	binding-protein-dependent transport systems inner membrane component
2487	 55.59	0	3383115..3385073	+	652	163848090	-	Caur_2539	-	alpha amylase catalytic region
2488	 55.20	0	3385131..3385409	-	92	163848091	-	Caur_2540	-	hypothetical protein
2489	 53.15	0	3385451..3385783	-	110	163848092	-	Caur_2541	-	thioredoxin
2490	 54.64	0	3386010..3386741	+	243	163848093	-	Caur_2542	-	beta-lactamase domain-containing protein
2491	 58.33	0	3386874..3388133	+	419	163848094	-	Caur_2543	-	glycine hydroxymethyltransferase
2492	 56.15	0	3388539..3389945	-	468	163848095	-	Caur_2544	-	hypothetical protein
2493	 55.14	0	3389995..3391200	+	401	163848096	-	Caur_2545	-	hypothetical protein
2494	 52.98	-1	3391184..3393367	-	727	163848097	-	Caur_2546	-	polyphosphate kinase
2495	 56.93	0	3393577..3394860	+	427	163848098	-	Caur_2547	-	major facilitator transporter
2496	 51.04	-1	3395095..3395382	+	95	163848099	-	Caur_2548	-	hypothetical protein
2497	 58.31	0	3395471..3397924	+	817	163848100	-	Caur_2549	-	glycosyl transferase family protein
2498	 56.64	0	3397899..3401318	+	1139	163848101	-	Caur_2550	-	NHL repeat-containing protein
2499	 58.13	0	3401315..3402298	+	327	163848102	-	Caur_2551	-	hypothetical protein
2500	 56.93	0	3402458..3403207	+	249	163848103	-	Caur_2552	-	6-phosphogluconolactonase
2501	 62.89	+1	3403424..3404455	-	343	163848104	-	Caur_2553	-	hypothetical protein
2502	 58.27	0	3406526..3407347	-	273	163848105	-	Caur_2554	-	protochlorophyllide reductase iron-sulfur ATP-binding protein
2503	 61.09	+1	3407405..3408694	-	429	163848106	-	Caur_2555	-	coenzyme F420 hydrogenase/dehydrogenase beta subunit
2504	 60.27	0	3408691..3410316	-	541	163848107	-	Caur_2556	-	light-independent protochlorophyllide reductase subunit B
2505	 56.83	0	3410329..3411609	-	426	163848108	-	Caur_2557	-	light-independent protochlorophyllide reductase subunit N
2506	 59.90	0	3412365..3413738	+	457	163848109	-	Caur_2558	-	TPR repeat-containing protein
2507	 60.80	+1	3413763..3414836	+	357	163848110	-	Caur_2559	-	hypothetical protein
2508	 61.22	+1	3415777..3417246	-	489	163848111	-	Caur_2560	-	cobyric acid synthase CobQ
2509	 62.62	+1	3417278..3418363	-	361	163848112	-	Caur_2561	-	aminotransferase class I and II
2510	 62.34	+1	3418342..3418896	-	184	163848113	-	Caur_2562	-	adenosylcobinamide-phosphate guanylyltransferase
2511	 62.18	+1	3418893..3420317	-	474	163848114	-	Caur_2563	-	cobyrinic acid a,c-diamide synthase
2512	 65.38	+2	3420372..3421151	-	259	163848115	-	Caur_2564	-	uroporphyrin-III C-methyltransferase
2513	 63.10	+1	3421141..3423492	-	783	163848116	-	Caur_2565	-	precorrin-3B C17-methyltransferase
2514	 62.06	+1	3423512..3424336	-	274	163848117	-	Caur_2566	-	precorrin-4 C11-methyltransferase
2515	 60.49	+1	3424333..3425061	-	242	163848118	-	Caur_2567	-	precorrin-2 C20-methyltransferase
2516	 63.14	+1	3425054..3426274	-	406	163848119	-	Caur_2568	-	precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit
2517	 60.67	+1	3426271..3427503	-	410	163848120	-	Caur_2569	-	cobalt-precorrin-6A synthase
2518	 60.63	+1	3427516..3428178	-	220	163848121	-	Caur_2570	-	precorrin-8X methylmutase CbiC/CobH
2519	 59.24	0	3428175..3428699	-	174	163848122	-	Caur_2571	-	multimeric flavodoxin WrbA-like protein
2520	 59.93	0	3428696..3430090	-	464	163848123	-	Caur_2572	-	cobalamin (vitamin B12) biosynthesis CbiX protein
2521	 63.35	+1	3431551..3432516	-	321	163848124	-	Caur_2573	-	cobalamin biosynthesis protein CobD
2522	 61.04	+1	3432503..3433249	-	248	163848125	-	Caur_2574	-	cobalt ABC transporter, ATPase subunit
2523	 56.98	0	3433246..3434040	-	264	163848126	-	Caur_2575	-	cobalt ABC transporter, inner membrane subunit CbiQ
2524	 59.08	0	3434012..3434314	-	100	163848127	-	Caur_2576	-	cobalt transport protein CbiN
2525	 57.62	0	3434311..3435051	-	246	163848128	-	Caur_2577	-	cobalamin biosynthesis protein CbiM
2526	 63.64	+1	3435068..3436123	-	351	163848129	-	Caur_2578	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
2527	 59.00	0	3436153..3440415	-	1420	163848130	-	Caur_2579	-	cobaltochelatase, CobN subunit
2528	 55.67	0	3440428..3441036	-	202	163848131	-	Caur_2580	-	cob(I)alamin adenosyltransferase
2529	 44.04	-2	3441724..3442134	-	136	163848132	-	Caur_2581	-	blue (type1) copper domain-containing protein
2530	 52.86	-1	3443002..3443298	-	98	163848133	-	Caur_2582	-	hypothetical protein
2531	 53.57	0	3443295..3444416	-	373	163848134	-	Caur_2583	-	hypothetical protein
2532	 56.09	0	3444730..3445164	-	144	163848135	-	Caur_2584	-	hypothetical protein
2533	 57.25	0	3445639..3447156	-	505	163848136	-	Caur_2585	-	threonine dehydratase
2534	 53.95	0	3447143..3448912	-	589	163848137	-	Caur_2586	-	diguanylate cyclase
2535	 58.85	0	3449089..3450162	-	357	163848138	-	Caur_2587	-	threonine aldolase
2536	 56.04	0	3450569..3451255	+	228	163848139	-	Caur_2588	-	Mg-protoporphyrin IX methyl transferase
2537	 56.55	0	3451292..3451627	+	111	163848140	-	Caur_2589	-	hypothetical protein
2538	 54.34	0	3451693..3452820	+	375	163848141	-	Caur_2590	-	magnesium-protoporphyrin IX monomethyl ester cyclase
2539	 60.38	0	3452941..3456678	+	1245	163848142	-	Caur_2591	-	magnesium chelatase
2540	 56.81	0	3456675..3457973	+	432	163848143	-	Caur_2592	-	PUCC protein
2541	 58.77	0	3458154..3459458	+	434	163848144	-	Caur_2593	-	glutamyl-tRNA reductase
2542	 61.54	+1	3459467..3460441	+	324	163848145	-	Caur_2594	-	porphobilinogen deaminase
2543	 60.56	+1	3460438..3461190	+	250	163848146	-	Caur_2595	-	uroporphyrinogen III synthase HEM4
2544	 60.15	0	3461195..3462253	+	352	163848147	-	Caur_2596	-	delta-aminolevulinic acid dehydratase
2545	 57.40	0	3462507..3463574	+	355	163848148	-	Caur_2597	-	uroporphyrinogen decarboxylase
2546	 61.04	+1	3463574..3464905	+	443	163848149	-	Caur_2598	-	glutamate-1-semialdehyde-2,1-aminomutase
2547	 57.54	0	3464917..3465825	+	302	163848150	-	Caur_2599	-	coproporphyrinogen III oxidase
2548	 56.44	0	3465997..3467805	-	602	163848151	-	Caur_2600	-	oligoendopeptidase F
2549	 60.05	0	3468821..3470029	-	402	163848152	-	Caur_2601	-	major facilitator transporter
2550	 60.25	0	3470046..3471650	-	534	163848153	-	Caur_2602	-	amidohydrolase 3
2551	 57.84	0	3471855..3473111	+	418	163848154	-	Caur_2603	-	hypothetical protein
2552	 57.41	0	3473753..3476128	+	791	163848155	-	Caur_2604	-	peptidase M23B
2553	 50.09	-1	3476370..3477986	+	538	163848156	-	Caur_2605	-	alkaline phosphatase-like protein
2554	 60.58	+1	3478420..3478797	-	125	163848157	-	Caur_2606	-	hypothetical protein
2555	 58.20	0	3478802..3480739	-	645	163848158	-	Caur_2607	-	hypothetical protein
2556	 58.12	0	3480736..3482256	-	506	163848159	-	Caur_2608	-	hypothetical protein
2557	 54.43	0	3482313..3482639	-	108	163848160	-	Caur_2609	-	ATP-dependent Clp protease adaptor protein ClpS
2558	 58.46	0	3482700..3485417	-	905	163848161	-	Caur_2610	-	von Willebrand factor type A
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.