IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2401	 56.04	0	3279772..3280326	+	184	163848004	-	Caur_2451	-	hypothetical protein
2402	 65.06	+2	3280461..3281021	+	186	163848005	-	Caur_2452	-	deaminase-reductase domain-containing protein
2403	 61.60	+1	3281118..3281354	+	78	163848006	-	Caur_2453	-	methyltransferase type 11
2404	 41.04	-2	3281398..3281955	+	185	163848007	-	Caur_2454	-	deaminase-reductase domain-containing protein
2405	 59.16	0	3282141..3282953	+	270	163848008	-	Caur_2455	-	N-acetyltransferase
2406	 47.79	-2	3283025..3283771	+	248	163848009	-	Caur_2456	-	methyltransferase type 11
2407	 53.28	0	3283878..3284243	+	121	163848010	-	Caur_2457	-	hypothetical protein
2408	 55.21	0	3284407..3284982	+	191	163848011	-	Caur_2458	-	hypothetical protein
2409	 56.07	0	3284998..3285384	+	128	163848012	-	Caur_2459	-	hypothetical protein
2410	 57.12	0	3285444..3286082	+	212	163848013	-	Caur_2460	-	deaminase-reductase domain-containing protein
2411	 58.52	0	3287682..3290933	+	1083	163848014	-	Caur_2461	-	O-antigen polymerase
2412	 40.99	-2	3290905..3292641	-	578	163848015	-	Caur_2462	-	TIR protein
2413	 58.39	0	3292709..3293143	-	144	163848016	-	Caur_2463	-	transposase IS4 family protein
2414	 48.08	-2	3293758..3294069	-	103	163848017	-	Caur_2465	-	PilT domain-containing protein
2415	 53.95	0	3294066..3294293	-	75	163848018	-	Caur_2466	-	prevent-host-death family protein
2416	 48.97	-2	3295005..3295733	+	242	163848019	-	Caur_2467	-	methyltransferase type 11
2417	 57.61	0	3297195..3298364	+	389	163848020	-	Caur_2468	-	hypothetical protein
2418	 57.20	0	3298451..3299401	+	316	163848021	-	Caur_2469	-	ABC transporter related
2419	 58.48	0	3299385..3300374	+	329	163848022	-	Caur_2470	-	ABC-type transport system involved in multi-copper enzyme maturation permease component-like protein
2420	 54.86	0	3300955..3301335	+	126	163848023	-	Caur_2471	-	CrcB protein
2421	 58.94	0	3301353..3302660	+	435	163848024	-	Caur_2472	-	CBS domain-containing protein
2422	 60.31	0	3302778..3305279	-	833	163848025	-	Caur_2473	-	ATPase
2423	 54.33	0	3305410..3306609	-	399	163848026	-	Caur_2474	-	RNA-binding S1 domain-containing protein
2424	 57.49	0	3306715..3307575	-	286	163848027	-	Caur_2475	-	hypothetical protein
2425	 57.25	0	3307680..3308645	-	321	163848028	-	Caur_2476	-	beta-lactamase domain-containing protein
2426	 58.38	0	3308734..3309252	+	172	163848029	-	Caur_2477	-	rhodanese domain-containing protein
2427	 58.03	0	3309249..3310070	+	273	163848030	-	Caur_2478	-	phosphotransferase domain-containing protein
2428	 52.09	-1	3310073..3310717	+	214	163848031	-	Caur_2479	-	NUDIX hydrolase
2429	 58.21	0	3313096..3313509	+	137	163848032	-	Caur_2480	-	hypothetical protein
2430	 52.38	-1	3313543..3313878	+	111	163848033	-	Caur_2481	-	hypothetical protein
2431	 59.28	0	3314210..3314791	+	193	163848034	-	Caur_2482	-	5-formyltetrahydrofolate cyclo-ligase
2432	 58.57	0	3314982..3316463	+	493	163848035	-	Caur_2483	-	putative 2-nitropropane dioxygenase
2433	 59.29	0	3316460..3317449	-	329	163848036	-	Caur_2484	-	WD40 domain-containing protein
2434	 56.48	0	3317479..3318450	-	323	163848037	-	Caur_2485	-	diacylglycerol kinase catalytic region
2435	 53.08	0	3318850..3319710	+	286	163848038	-	Caur_2486	-	integrase family protein
2436	 56.42	0	3319982..3321601	+	539	163848039	-	Caur_2487	-	glycyl-tRNA synthetase
2437	 56.06	0	3322240..3323172	-	310	163848040	-	Caur_2488	-	oxidoreductase molybdopterin binding
2438	 57.02	0	3323420..3323989	+	189	163848041	-	Caur_2489	-	transcriptional regulator PadR family protein
2439	 55.90	0	3323989..3324768	+	259	163848042	-	Caur_2490	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
2440	 58.19	0	3324777..3325472	+	231	163848043	-	Caur_2491	-	molybdate ABC transporter, inner membrane subunit
2441	 57.63	0	3326590..3327231	+	213	163848044	-	Caur_2493	-	cyclase family protein
2442	 57.03	0	3327739..3328371	+	210	163848045	-	Caur_2494	-	translin family protein
2443	 55.56	0	3328448..3329590	-	380	163848046	-	Caur_2495	-	PAS sensor protein
2444	 55.05	0	3329601..3329927	-	108	163848047	-	Caur_2496	-	KaiB domain-containing protein
2445	 53.65	0	3330074..3331348	-	424	163848048	-	Caur_2497	-	PAS sensor protein
2446	 56.19	0	3331400..3332134	-	244	163848049	-	Caur_2498	-	prolipoprotein diacylglyceryl transferase
2447	 53.85	0	3332192..3332737	-	181	163848050	-	Caur_2499	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
2448	 53.97	0	3333052..3334059	+	335	163848051	-	Caur_2500	-	DNA-directed RNA polymerase, alpha subunit
2449	 57.64	0	3334071..3335333	+	420	163848052	-	Caur_2501	-	transcription termination factor Rho
2450	 57.12	0	3335366..3335983	+	205	163848053	-	Caur_2502	-	molybdopterin-guanine dinucleotide biosynthesis protein A-like protein
2451	 55.66	0	3336491..3337807	+	438	163848054	-	Caur_2503	-	WD-40 repeat-containing protein
2452	 58.18	0	3337810..3338646	+	278	163848055	-	Caur_2504	-	methyltransferase type 11
2453	 56.54	0	3339006..3339548	+	180	163848056	-	Caur_2505	-	thioesterase superfamily protein
2454	 56.64	0	3340082..3340759	+	225	163848057	-	Caur_2506	-	response regulator receiver
2455	 62.27	+1	3340803..3341939	-	378	163848058	-	Caur_2507	-	arginine/ornithine transport system ATPase
2456	 60.04	0	3341959..3344160	-	733	163848059	-	Caur_2508	-	methylmalonyl-CoA mutase
2457	 60.72	+1	3344157..3346310	-	717	163848060	-	Caur_2509	-	methylmalonyl-CoA mutase, large subunit
2458	 61.39	+1	3346595..3347731	+	378	163848061	-	Caur_2510	-	peptidase M20
2459	 56.45	0	3348508..3349290	+	260	163848062	-	Caur_2511	-	aminoglycoside phosphotransferase
2460	 59.59	0	3349282..3350610	-	442	163848063	-	Caur_2512	-	fumarylacetoacetase
2461	 56.56	0	3352214..3353380	-	388	163848064	-	Caur_2513	-	homogentisate 12-dioxygenase
2462	 57.96	0	3354625..3355428	+	267	163848065	-	Caur_2514	-	hypothetical protein
2463	 58.12	0	3356316..3357005	-	229	163848066	-	Caur_2515	-	abortive infection protein
2464	 52.41	-1	3357471..3358592	-	373	163848067	-	Caur_2516	-	Sulfate transporter/antisigma-factor antagonist STAS
2465	 61.61	+1	3359205..3360173	-	322	163848068	-	Caur_2517	-	prephenate dehydrogenase
2466	 57.00	0	3360198..3360797	-	199	163848069	-	Caur_2518	-	hypothetical protein
2467	 59.45	0	3360790..3361884	-	364	163848070	-	Caur_2519	-	chorismate synthase
2468	 59.14	0	3361908..3363116	-	402	163848071	-	Caur_2520	-	glycosyl transferase group 1
2469	 56.79	0	3363393..3364577	-	394	163848072	-	Caur_2521	-	SAM-dependent methyltransferase
2470	 57.17	0	3364607..3365848	-	413	163848073	-	Caur_2522	-	nucleotidyl transferase
2471	 54.55	0	3365933..3367186	-	417	163848074	-	Caur_2523	-	glucose-1-phosphate adenylyltransferase
2472	 53.46	0	3367723..3368199	+	158	163848075	-	Caur_2524	-	hypothetical protein
2473	 45.65	-2	3368203..3369087	+	294	163848076	-	Caur_2525	-	hypothetical protein
2474	 46.07	-2	3369107..3370009	+	300	163848077	-	Caur_2526	-	D12 class N6 adenine-specific DNA methyltransferase
2475	 60.02	0	3370132..3371004	+	290	163848078	-	Caur_2527	-	UspA domain-containing protein
2476	 56.91	0	3371009..3371500	-	163	163848079	-	Caur_2528	-	MOSC domain-containing protein
2477	 55.41	0	3371631..3372758	+	375	163848080	-	Caur_2529	-	hypothetical protein
2478	 54.50	0	3372766..3373587	+	273	163848081	-	Caur_2530	-	UspA domain-containing protein
2479	 57.13	0	3373679..3375073	-	464	163848082	-	Caur_2531	-	peptidase S41
2480	 58.02	0	3375211..3376344	+	377	163848083	-	Caur_2532	-	aminotransferase class I and II
2481	 59.17	0	3376341..3377261	+	306	163848084	-	Caur_2533	-	pseudouridine synthase
2482	 53.39	0	3377471..3377854	-	127	163848085	-	Caur_2534	-	hypothetical protein
2483	 54.65	0	3378455..3378712	-	85	163848086	-	Caur_2535	-	hypothetical protein
2484	 55.94	0	3379195..3380769	+	524	163848087	-	Caur_2536	-	alkaline phosphatase
2485	 57.87	0	3381017..3382039	-	340	163848088	-	Caur_2537	-	NMT1/THI5-like domain-containing protein
2486	 58.56	0	3382077..3382865	-	262	163848089	-	Caur_2538	-	binding-protein-dependent transport systems inner membrane component
2487	 55.59	0	3383115..3385073	+	652	163848090	-	Caur_2539	-	alpha amylase catalytic region
2488	 55.20	0	3385131..3385409	-	92	163848091	-	Caur_2540	-	hypothetical protein
2489	 53.15	0	3385451..3385783	-	110	163848092	-	Caur_2541	-	thioredoxin
2490	 54.64	0	3386010..3386741	+	243	163848093	-	Caur_2542	-	beta-lactamase domain-containing protein
2491	 58.33	0	3386874..3388133	+	419	163848094	-	Caur_2543	-	glycine hydroxymethyltransferase
2492	 56.15	0	3388539..3389945	-	468	163848095	-	Caur_2544	-	hypothetical protein
2493	 55.14	0	3389995..3391200	+	401	163848096	-	Caur_2545	-	hypothetical protein
2494	 52.98	-1	3391184..3393367	-	727	163848097	-	Caur_2546	-	polyphosphate kinase
2495	 56.93	0	3393577..3394860	+	427	163848098	-	Caur_2547	-	major facilitator transporter
2496	 51.04	-1	3395095..3395382	+	95	163848099	-	Caur_2548	-	hypothetical protein
2497	 58.31	0	3395471..3397924	+	817	163848100	-	Caur_2549	-	glycosyl transferase family protein
2498	 56.64	0	3397899..3401318	+	1139	163848101	-	Caur_2550	-	NHL repeat-containing protein
2499	 58.13	0	3401315..3402298	+	327	163848102	-	Caur_2551	-	hypothetical protein
2500	 56.93	0	3402458..3403207	+	249	163848103	-	Caur_2552	-	6-phosphogluconolactonase
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.