IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2340	 52.11	-1	3222112..3223464	+	450	163847943	-	Caur_2389	-	preprotein translocase, SecY subunit
2341	 55.90	0	3223612..3224280	+	222	163847944	-	Caur_2390	-	adenylate kinase
2342	 49.10	-2	3224293..3224514	+	73	163847945	-	Caur_2391	-	translation initiation factor IF-1
2343	 54.70	0	3224563..3224679	+	38	163847946	-	Caur_2392	-	ribosomal protein L36
2344	 56.51	0	3224776..3225159	+	127	163847947	-	Caur_2393	-	30S ribosomal protein S13
2345	 58.15	0	3225180..3225590	+	136	163847948	-	Caur_2394	-	30S ribosomal protein S11
2346	 54.59	0	3225784..3226404	+	206	163847949	-	Caur_2395	-	ribosomal protein S4
2347	 52.77	-1	3226449..3227405	+	318	163847950	-	Caur_2396	-	DNA-directed RNA polymerase, alpha subunit
2348	 54.99	0	3227421..3227771	+	116	163847951	-	Caur_2397	-	ribosomal protein L17
2349	 56.75	0	3227771..3228607	+	278	163847952	-	Caur_2398	-	tRNA pseudouridine synthase A
2350	 54.02	0	3228613..3229047	+	144	163847953	-	Caur_2399	-	50S ribosomal protein L13
2351	 57.39	0	3229138..3229536	+	132	163847954	-	Caur_2400	-	ribosomal protein S9
2352	 50.43	-1	3229620..3230198	+	192	163847955	-	Caur_2401	-	methyltransferase
2353	 53.91	0	3230202..3230687	+	161	163847956	-	Caur_2402	-	pantetheine-phosphate adenylyltransferase
2354	 56.78	0	3230684..3231118	+	144	163847957	-	Caur_2403	-	hypothetical protein
2355	 50.56	-1	3231188..3231721	+	177	163847958	-	Caur_2404	-	hypothetical protein
2356	 58.06	0	3231734..3231919	+	61	163847959	-	Caur_2405	-	ribosomal protein L32
2357	 53.83	0	3232022..3233026	+	334	163847960	-	Caur_2406	-	3-oxoacyl-(acyl-carrier-protein) synthase III
2358	 54.55	0	3233230..3234186	+	318	163847961	-	Caur_2407	-	malonyl CoA-acyl carrier protein transacylase
2359	 57.30	0	3234195..3234941	+	248	163847962	-	Caur_2408	-	short-chain dehydrogenase/reductase SDR
2360	 57.07	0	3234956..3235705	+	249	163847963	-	Caur_2409	-	short-chain dehydrogenase/reductase SDR
2361	 56.50	0	3236487..3237794	-	435	163847964	-	Caur_2410	-	phytoene desaturase
2362	 55.74	0	3238161..3239624	-	487	163847965	-	Caur_2411	-	type II secretion system protein E
2363	 50.00	-1	3239716..3241095	-	459	163847966	-	Caur_2412	-	ATPase central domain-containing protein
2364	 54.42	0	3241678..3242526	-	282	163847967	-	Caur_2413	-	TPR repeat-containing protein
2365	 57.39	0	3242504..3243904	-	466	163847968	-	Caur_2414	-	RNA modification protein
2366	 54.91	0	3243912..3244532	-	206	163847969	-	Caur_2415	-	hypothetical protein
2367	 51.85	-1	3244982..3245305	-	107	163847970	-	Caur_2416	-	hypothetical protein
2368	 51.90	-1	3245671..3247146	+	491	163847971	-	Caur_2417	-	peptidase domain-containing protein
2369	 55.09	0	3247163..3248311	+	382	163847972	-	Caur_2418	-	hypothetical protein
2370	 55.25	0	3248283..3249254	+	323	163847973	-	Caur_2419	-	DNA polymerase III, delta subunit
2371	 56.49	0	3249372..3249656	-	94	163847974	-	Caur_2420	-	ribosomal protein S20
2372	 57.47	0	3249758..3251323	+	521	163847975	-	Caur_2421	-	integral membrane protein MviN
2373	 55.76	0	3251915..3253399	-	494	163847976	-	Caur_2422	-	phytoene desaturase
2374	 56.71	0	3253942..3254604	+	220	163847977	-	Caur_2423	-	electron transport protein SCO1/SenC
2375	 56.17	0	3254621..3254782	+	53	163847978	-	Caur_2424	-	hypothetical protein
2376	 52.76	-1	3254779..3255267	+	162	163847979	-	Caur_2425	-	cytochrome c oxidase subunit II
2377	 55.77	0	3255307..3256986	+	559	163847980	-	Caur_2426	-	cytochrome-c oxidase
2378	 57.84	0	3257270..3258085	+	271	163847981	-	Caur_2427	-	ABC transporter related
2379	 57.75	0	3258066..3259130	+	354	163847982	-	Caur_2428	-	periplasmic binding protein
2380	 57.72	0	3259127..3260110	+	327	163847983	-	Caur_2429	-	transport system permease protein
2381	 53.72	0	3260207..3260569	+	120	163847984	-	Caur_2430	-	antibiotic biosynthesis monooxygenase
2382	 54.89	0	3260779..3261474	+	231	163847985	-	Caur_2431	-	iron dependent repressor
2383	 68.08	+2	3262353..3263486	+	377	163847986	-	Caur_2432	-	hypothetical protein
2384	 56.75	0	3263853..3264992	-	379	163847987	-	Caur_2433	-	histidine kinase
2385	 52.73	-1	3264989..3265684	-	231	163847988	-	Caur_2434	-	response regulator receiver
2386	 56.83	0	3266057..3266605	-	182	163847989	-	Caur_2435	-	hypothetical protein
2387	 55.51	0	3266960..3268411	-	483	163847990	-	Caur_2436	-	ATPase domain-containing protein
2388	 53.28	0	3268392..3269108	-	238	163847991	-	Caur_2437	-	response regulator receiver
2389	 55.22	0	3269220..3269822	-	200	163847992	-	Caur_2438	-	hypothetical protein
2390	 54.54	0	3270475..3272346	-	623	163847993	-	Caur_2439	-	ABC transporter related
2391	 55.44	0	3272533..3273129	+	198	163847994	-	Caur_2440	-	hypothetical protein
2392	 50.29	-1	3273182..3273700	-	172	163847995	-	Caur_2441	-	hypothetical protein
2393	 54.82	0	3274056..3274646	+	196	163847996	-	Caur_2442	-	deaminase-reductase domain-containing protein
2394	 56.44	0	3274824..3275126	+	100	163847997	-	Caur_2443	-	antibiotic biosynthesis monooxygenase
2395	 57.03	0	3275198..3275581	+	127	163847998	-	Caur_2444	-	glyoxalase/bleomycin resistance protein/dioxygenase
2396	 63.76	+1	3276141..3277139	+	332	163847999	-	Caur_2446	-	transposase IS4 family protein
2397	 63.45	+1	3277419..3277853	-	144	163848000	-	Caur_2447	-	transposase IS4 family protein
2398	 62.63	+1	3277853..3278224	-	123	163848001	-	Caur_2448	-	TIS1421-transposase protein A
2399	 47.83	-2	3278293..3278706	+	137	163848002	-	Caur_2449	-	hypothetical protein
2400	 52.40	-1	3278875..3279624	+	249	163848003	-	Caur_2450	-	short-chain dehydrogenase/reductase SDR
2401	 56.04	0	3279772..3280326	+	184	163848004	-	Caur_2451	-	hypothetical protein
2402	 65.06	+2	3280461..3281021	+	186	163848005	-	Caur_2452	-	deaminase-reductase domain-containing protein
2403	 61.60	+1	3281118..3281354	+	78	163848006	-	Caur_2453	-	methyltransferase type 11
2404	 41.04	-2	3281398..3281955	+	185	163848007	-	Caur_2454	-	deaminase-reductase domain-containing protein
2405	 59.16	0	3282141..3282953	+	270	163848008	-	Caur_2455	-	N-acetyltransferase
2406	 47.79	-2	3283025..3283771	+	248	163848009	-	Caur_2456	-	methyltransferase type 11
2407	 53.28	0	3283878..3284243	+	121	163848010	-	Caur_2457	-	hypothetical protein
2408	 55.21	0	3284407..3284982	+	191	163848011	-	Caur_2458	-	hypothetical protein
2409	 56.07	0	3284998..3285384	+	128	163848012	-	Caur_2459	-	hypothetical protein
2410	 57.12	0	3285444..3286082	+	212	163848013	-	Caur_2460	-	deaminase-reductase domain-containing protein
2411	 58.52	0	3287682..3290933	+	1083	163848014	-	Caur_2461	-	O-antigen polymerase
2412	 40.99	-2	3290905..3292641	-	578	163848015	-	Caur_2462	-	TIR protein
2413	 58.39	0	3292709..3293143	-	144	163848016	-	Caur_2463	-	transposase IS4 family protein
2414	 48.08	-2	3293758..3294069	-	103	163848017	-	Caur_2465	-	PilT domain-containing protein
2415	 53.95	0	3294066..3294293	-	75	163848018	-	Caur_2466	-	prevent-host-death family protein
2416	 48.97	-2	3295005..3295733	+	242	163848019	-	Caur_2467	-	methyltransferase type 11
2417	 57.61	0	3297195..3298364	+	389	163848020	-	Caur_2468	-	hypothetical protein
2418	 57.20	0	3298451..3299401	+	316	163848021	-	Caur_2469	-	ABC transporter related
2419	 58.48	0	3299385..3300374	+	329	163848022	-	Caur_2470	-	ABC-type transport system involved in multi-copper enzyme maturation permease component-like protein
2420	 54.86	0	3300955..3301335	+	126	163848023	-	Caur_2471	-	CrcB protein
2421	 58.94	0	3301353..3302660	+	435	163848024	-	Caur_2472	-	CBS domain-containing protein
2422	 60.31	0	3302778..3305279	-	833	163848025	-	Caur_2473	-	ATPase
2423	 54.33	0	3305410..3306609	-	399	163848026	-	Caur_2474	-	RNA-binding S1 domain-containing protein
2424	 57.49	0	3306715..3307575	-	286	163848027	-	Caur_2475	-	hypothetical protein
2425	 57.25	0	3307680..3308645	-	321	163848028	-	Caur_2476	-	beta-lactamase domain-containing protein
2426	 58.38	0	3308734..3309252	+	172	163848029	-	Caur_2477	-	rhodanese domain-containing protein
2427	 58.03	0	3309249..3310070	+	273	163848030	-	Caur_2478	-	phosphotransferase domain-containing protein
2428	 52.09	-1	3310073..3310717	+	214	163848031	-	Caur_2479	-	NUDIX hydrolase
2429	 58.21	0	3313096..3313509	+	137	163848032	-	Caur_2480	-	hypothetical protein
2430	 52.38	-1	3313543..3313878	+	111	163848033	-	Caur_2481	-	hypothetical protein
2431	 59.28	0	3314210..3314791	+	193	163848034	-	Caur_2482	-	5-formyltetrahydrofolate cyclo-ligase
2432	 58.57	0	3314982..3316463	+	493	163848035	-	Caur_2483	-	putative 2-nitropropane dioxygenase
2433	 59.29	0	3316460..3317449	-	329	163848036	-	Caur_2484	-	WD40 domain-containing protein
2434	 56.48	0	3317479..3318450	-	323	163848037	-	Caur_2485	-	diacylglycerol kinase catalytic region
2435	 53.08	0	3318850..3319710	+	286	163848038	-	Caur_2486	-	integrase family protein
2436	 56.42	0	3319982..3321601	+	539	163848039	-	Caur_2487	-	glycyl-tRNA synthetase
2437	 56.06	0	3322240..3323172	-	310	163848040	-	Caur_2488	-	oxidoreductase molybdopterin binding
2438	 57.02	0	3323420..3323989	+	189	163848041	-	Caur_2489	-	transcriptional regulator PadR family protein
2439	 55.90	0	3323989..3324768	+	259	163848042	-	Caur_2490	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.