IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 56.76   STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2299	 53.01	-1	3185404..3186018	-	204	163847902	-	Caur_2348	-	oxidoreductase molybdopterin binding
2300	 55.29	0	3186093..3187208	+	371	163847903	-	Caur_2349	-	Rieske (2Fe-2S) domain-containing protein
2301	 58.54	0	3187247..3188476	+	409	163847904	-	Caur_2350	-	glycosyl transferase family protein
2302	 59.31	0	3188819..3191824	-	1001	163847905	-	Caur_2351	-	WD-40 repeat-containing protein
2303	 56.03	0	3191915..3193306	-	463	163847906	-	Caur_2352	-	carotene 7,8-desaturase
2304	 60.10	0	3194091..3195233	+	380	163847907	-	Caur_2353	-	hypothetical protein
2305	 53.78	0	3195711..3196781	+	356	163847908	-	Caur_2354	-	Sulfate transporter/antisigma-factor antagonist STAS
2306	 59.15	0	3199440..3200663	+	407	163847909	-	Caur_2355	-	aminotransferase class I and II
2307	 56.09	0	3200710..3201711	+	333	163847910	-	Caur_2356	-	ribokinase-like domain-containing protein
2308	 43.90	-2	3201764..3202132	-	122	163847911	-	Caur_2357	-	anti-anti-sigma factor
2309	 48.15	-2	3202163..3202594	-	143	163847912	-	Caur_2358	-	ATPase domain-containing protein
2310	 53.59	0	3202618..3203076	-	152	163847913	-	Caur_2359	-	ATPase domain-containing protein
2311	 53.22	0	3203224..3204777	-	517	163847914	-	Caur_2360	-	carboxyl transferase
2312	 57.73	0	3205066..3205815	-	249	163847915	-	Caur_2361	-	WecB/TagA/CpsF family glycosyl transferase
2313	 45.15	-2	3205943..3206365	+	140	163847916	-	Caur_2362	-	hypothetical protein
2314	 59.41	0	3206844..3207284	+	146	163847917	-	Caur_2363	-	30S ribosomal protein S12
2315	 54.43	0	3207297..3207770	+	157	163847918	-	Caur_2364	-	30S ribosomal protein S7
2316	 56.57	0	3207836..3209944	+	702	163847919	-	Caur_2365	-	translation elongation factor G
2317	 57.79	0	3209970..3210893	+	307	163847920	-	Caur_2366	-	putative SAM-dependent methyltransferase
2318	 61.36	+1	3210940..3212145	+	401	163847921	-	Caur_2367	-	elongation factor Tu
2319	 50.16	-1	3212208..3212516	+	102	163847922	-	Caur_2368	-	30S ribosomal protein S10
2320	 59.08	0	3212627..3213259	+	210	163847923	-	Caur_2369	-	ribosomal protein L3
2321	 56.20	0	3213272..3213940	+	222	163847924	-	Caur_2370	-	ribosomal protein L4/L1e
2322	 49.47	-1	3213943..3214227	+	94	163847925	-	Caur_2371	-	ribosomal protein L25/L23
2323	 58.06	0	3214303..3215127	+	274	163847926	-	Caur_2372	-	50S ribosomal protein L2
2324	 54.07	0	3215403..3215648	+	81	163847927	-	Caur_2373	-	ribosomal protein S19
2325	 52.92	-1	3215740..3216081	+	113	163847928	-	Caur_2374	-	ribosomal protein L22
2326	 57.10	0	3216097..3216828	+	243	163847929	-	Caur_2375	-	ribosomal protein S3
2327	 57.02	0	3216815..3217270	+	151	163847930	-	Caur_2376	-	50S ribosomal protein L16
2328	 55.56	0	3217257..3217463	+	68	163847931	-	Caur_2377	-	ribosomal protein L29
2329	 51.11	-1	3217482..3217751	+	89	163847932	-	Caur_2378	-	ribosomal protein S17
2330	 56.37	0	3217754..3218122	+	122	163847933	-	Caur_2379	-	ribosomal protein L14
2331	 55.56	0	3218122..3218454	+	110	163847934	-	Caur_2380	-	ribosomal protein L24
2332	 53.04	-1	3218509..3219051	+	180	163847935	-	Caur_2381	-	ribosomal protein L5
2333	 56.45	0	3219108..3219293	+	61	163847936	-	Caur_2382	-	ribosomal protein S14
2334	 56.22	0	3219349..3219750	+	133	163847937	-	Caur_2383	-	ribosomal protein S8
2335	 56.03	0	3219769..3220332	+	187	163847938	-	Caur_2384	-	ribosomal protein L6
2336	 55.65	0	3220423..3220785	+	120	163847939	-	Caur_2385	-	ribosomal protein L18
2337	 58.29	0	3220815..3221351	+	178	163847940	-	Caur_2386	-	ribosomal protein S5
2338	 57.58	0	3221351..3221548	+	65	163847941	-	Caur_2387	-	ribosomal protein L30
2339	 56.53	0	3221545..3222057	+	170	163847942	-	Caur_2388	-	ribosomal protein L15
2340	 52.11	-1	3222112..3223464	+	450	163847943	-	Caur_2389	-	preprotein translocase, SecY subunit
2341	 55.90	0	3223612..3224280	+	222	163847944	-	Caur_2390	-	adenylate kinase
2342	 49.10	-2	3224293..3224514	+	73	163847945	-	Caur_2391	-	translation initiation factor IF-1
2343	 54.70	0	3224563..3224679	+	38	163847946	-	Caur_2392	-	ribosomal protein L36
2344	 56.51	0	3224776..3225159	+	127	163847947	-	Caur_2393	-	30S ribosomal protein S13
2345	 58.15	0	3225180..3225590	+	136	163847948	-	Caur_2394	-	30S ribosomal protein S11
2346	 54.59	0	3225784..3226404	+	206	163847949	-	Caur_2395	-	ribosomal protein S4
2347	 52.77	-1	3226449..3227405	+	318	163847950	-	Caur_2396	-	DNA-directed RNA polymerase, alpha subunit
2348	 54.99	0	3227421..3227771	+	116	163847951	-	Caur_2397	-	ribosomal protein L17
2349	 56.75	0	3227771..3228607	+	278	163847952	-	Caur_2398	-	tRNA pseudouridine synthase A
2350	 54.02	0	3228613..3229047	+	144	163847953	-	Caur_2399	-	50S ribosomal protein L13
2351	 57.39	0	3229138..3229536	+	132	163847954	-	Caur_2400	-	ribosomal protein S9
2352	 50.43	-1	3229620..3230198	+	192	163847955	-	Caur_2401	-	methyltransferase
2353	 53.91	0	3230202..3230687	+	161	163847956	-	Caur_2402	-	pantetheine-phosphate adenylyltransferase
2354	 56.78	0	3230684..3231118	+	144	163847957	-	Caur_2403	-	hypothetical protein
2355	 50.56	-1	3231188..3231721	+	177	163847958	-	Caur_2404	-	hypothetical protein
2356	 58.06	0	3231734..3231919	+	61	163847959	-	Caur_2405	-	ribosomal protein L32
2357	 53.83	0	3232022..3233026	+	334	163847960	-	Caur_2406	-	3-oxoacyl-(acyl-carrier-protein) synthase III
2358	 54.55	0	3233230..3234186	+	318	163847961	-	Caur_2407	-	malonyl CoA-acyl carrier protein transacylase
2359	 57.30	0	3234195..3234941	+	248	163847962	-	Caur_2408	-	short-chain dehydrogenase/reductase SDR
2360	 57.07	0	3234956..3235705	+	249	163847963	-	Caur_2409	-	short-chain dehydrogenase/reductase SDR
2361	 56.50	0	3236487..3237794	-	435	163847964	-	Caur_2410	-	phytoene desaturase
2362	 55.74	0	3238161..3239624	-	487	163847965	-	Caur_2411	-	type II secretion system protein E
2363	 50.00	-1	3239716..3241095	-	459	163847966	-	Caur_2412	-	ATPase central domain-containing protein
2364	 54.42	0	3241678..3242526	-	282	163847967	-	Caur_2413	-	TPR repeat-containing protein
2365	 57.39	0	3242504..3243904	-	466	163847968	-	Caur_2414	-	RNA modification protein
2366	 54.91	0	3243912..3244532	-	206	163847969	-	Caur_2415	-	hypothetical protein
2367	 51.85	-1	3244982..3245305	-	107	163847970	-	Caur_2416	-	hypothetical protein
2368	 51.90	-1	3245671..3247146	+	491	163847971	-	Caur_2417	-	peptidase domain-containing protein
2369	 55.09	0	3247163..3248311	+	382	163847972	-	Caur_2418	-	hypothetical protein
2370	 55.25	0	3248283..3249254	+	323	163847973	-	Caur_2419	-	DNA polymerase III, delta subunit
2371	 56.49	0	3249372..3249656	-	94	163847974	-	Caur_2420	-	ribosomal protein S20
2372	 57.47	0	3249758..3251323	+	521	163847975	-	Caur_2421	-	integral membrane protein MviN
2373	 55.76	0	3251915..3253399	-	494	163847976	-	Caur_2422	-	phytoene desaturase
2374	 56.71	0	3253942..3254604	+	220	163847977	-	Caur_2423	-	electron transport protein SCO1/SenC
2375	 56.17	0	3254621..3254782	+	53	163847978	-	Caur_2424	-	hypothetical protein
2376	 52.76	-1	3254779..3255267	+	162	163847979	-	Caur_2425	-	cytochrome c oxidase subunit II
2377	 55.77	0	3255307..3256986	+	559	163847980	-	Caur_2426	-	cytochrome-c oxidase
2378	 57.84	0	3257270..3258085	+	271	163847981	-	Caur_2427	-	ABC transporter related
2379	 57.75	0	3258066..3259130	+	354	163847982	-	Caur_2428	-	periplasmic binding protein
2380	 57.72	0	3259127..3260110	+	327	163847983	-	Caur_2429	-	transport system permease protein
2381	 53.72	0	3260207..3260569	+	120	163847984	-	Caur_2430	-	antibiotic biosynthesis monooxygenase
2382	 54.89	0	3260779..3261474	+	231	163847985	-	Caur_2431	-	iron dependent repressor
2383	 68.08	+2	3262353..3263486	+	377	163847986	-	Caur_2432	-	hypothetical protein
2384	 56.75	0	3263853..3264992	-	379	163847987	-	Caur_2433	-	histidine kinase
2385	 52.73	-1	3264989..3265684	-	231	163847988	-	Caur_2434	-	response regulator receiver
2386	 56.83	0	3266057..3266605	-	182	163847989	-	Caur_2435	-	hypothetical protein
2387	 55.51	0	3266960..3268411	-	483	163847990	-	Caur_2436	-	ATPase domain-containing protein
2388	 53.28	0	3268392..3269108	-	238	163847991	-	Caur_2437	-	response regulator receiver
2389	 55.22	0	3269220..3269822	-	200	163847992	-	Caur_2438	-	hypothetical protein
2390	 54.54	0	3270475..3272346	-	623	163847993	-	Caur_2439	-	ABC transporter related
2391	 55.44	0	3272533..3273129	+	198	163847994	-	Caur_2440	-	hypothetical protein
2392	 50.29	-1	3273182..3273700	-	172	163847995	-	Caur_2441	-	hypothetical protein
2393	 54.82	0	3274056..3274646	+	196	163847996	-	Caur_2442	-	deaminase-reductase domain-containing protein
2394	 56.44	0	3274824..3275126	+	100	163847997	-	Caur_2443	-	antibiotic biosynthesis monooxygenase
2395	 57.03	0	3275198..3275581	+	127	163847998	-	Caur_2444	-	glyoxalase/bleomycin resistance protein/dioxygenase
2396	 63.76	+1	3276141..3277139	+	332	163847999	-	Caur_2446	-	transposase IS4 family protein
2397	 63.45	+1	3277419..3277853	-	144	163848000	-	Caur_2447	-	transposase IS4 family protein
2398	 62.63	+1	3277853..3278224	-	123	163848001	-	Caur_2448	-	TIS1421-transposase protein A
56.76	MEAN

3.69	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.