IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1945	 55.41	0	2725828..2726289	-	153	163847548	-	Caur_1988	-	forkhead-associated protein
1946	 55.93	0	2726293..2727009	-	238	163847549	-	Caur_1989	-	forkhead-associated protein
1947	 61.95	+1	2727276..2727953	-	225	163847550	-	Caur_1990	-	peptidase M22 glycoprotease
1948	 54.70	0	2727953..2728537	-	194	163847551	-	Caur_1991	-	hypothetical protein
1949	 56.56	0	2728578..2728943	-	121	163847552	-	Caur_1992	-	hypothetical protein
1950	 56.96	0	2729156..2730247	+	363	163847553	-	Caur_1993	-	periplasmic solute binding protein
1951	 57.07	0	2730338..2731171	+	277	163847554	-	Caur_1994	-	ABC transporter related
1952	 56.99	0	2731168..2732004	+	278	163847555	-	Caur_1995	-	ABC-3 protein
1953	 59.30	0	2732088..2734706	+	872	163847556	-	Caur_1996	-	putative poly-gamma-glutamate biosynthesis (capsule formation)-like protein
1954	 56.60	0	2734843..2735418	+	191	163847557	-	Caur_1997	-	response regulator receiver
1955	 61.90	+1	2735629..2736237	+	202	163847558	-	Caur_1998	-	hypothetical protein
1956	 57.91	0	2736401..2737348	+	315	163847559	-	Caur_1999	-	putative sulfite oxidase subunit YedY
1957	 56.12	0	2738160..2738813	+	217	163847560	-	Caur_2000	-	ferric reductase domain-containing protein
1958	 54.25	0	2738776..2739516	+	246	163847561	-	Caur_2001	-	response regulator receiver
1959	 61.19	+1	2741799..2742839	-	346	163847562	-	Caur_2002	-	2-dehydropantoate 2-reductase
1960	 53.42	0	2742990..2743457	+	155	163847563	-	Caur_2003	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1961	 51.98	-1	2744028..2745089	-	353	163847564	-	Caur_2004	-	Sulfate transporter/antisigma-factor antagonist STAS
1962	 59.15	0	2745247..2746137	-	296	163847565	-	Caur_2005	-	formyl transferase domain-containing protein
1963	 55.46	0	2746168..2746506	+	112	163847566	-	Caur_2006	-	hypothetical protein
1964	 59.65	0	2746552..2747820	-	422	163847567	-	Caur_2007	-	phosphoribosylglycinamide synthetase
1965	 59.45	0	2747845..2749230	-	461	163847568	-	Caur_2008	-	radical SAM domain-containing protein
1966	 56.26	0	2750213..2751154	-	313	163847569	-	Caur_2009	-	transglutaminase domain-containing protein
1967	 53.25	0	2751189..2752142	-	317	163847570	-	Caur_2010	-	hypothetical protein
1968	 54.94	0	2752208..2753674	-	488	163847571	-	Caur_2011	-	hypothetical protein
1969	 54.58	0	2753964..2754848	-	294	163847572	-	Caur_2012	-	stearoyl-CoA 9-desaturase
1970	 59.12	0	2756420..2757691	-	423	163847573	-	Caur_2013	-	carboxyl-terminal protease
1971	 56.64	0	2757701..2758777	-	358	163847574	-	Caur_2014	-	cellulase
1972	 58.27	0	2758799..2760061	-	420	163847575	-	Caur_2015	-	polynucleotide adenylyltransferase region
1973	 54.93	0	2760204..2761157	+	317	163847576	-	Caur_2016	-	hypothetical protein
1974	 52.42	-1	2761457..2762635	-	392	163847577	-	Caur_2017	-	abortive infection protein
1975	 58.67	0	2763282..2763944	-	220	163847578	-	Caur_2018	-	beta-phosphoglucomutase
1976	 58.22	0	2764028..2766193	-	721	163847579	-	Caur_2019	-	Kojibiose phosphorylase
1977	 53.35	0	2766305..2767228	-	307	163847580	-	Caur_2020	-	binding-protein-dependent transport systems inner membrane component
1978	 52.19	-1	2767242..2768132	-	296	163847581	-	Caur_2021	-	binding-protein-dependent transport systems inner membrane component
1979	 56.73	0	2768196..2769533	-	445	163847582	-	Caur_2022	-	extracellular solute-binding protein
1980	 54.19	0	2769691..2770716	-	341	163847583	-	Caur_2023	-	alanine racemase
1981	 57.04	0	2771771..2773495	+	574	163847584	-	Caur_2024	-	arginyl-tRNA synthetase
1982	 51.73	-1	2773592..2775298	+	568	163847585	-	Caur_2025	-	hypothetical protein
1983	 60.10	0	2775594..2776415	+	273	163847586	-	Caur_2026	-	HAD family hydrolase
1984	 58.02	0	2777195..2778373	+	392	163847587	-	Caur_2029	-	filamentation induced by cAMP protein Fic
1985	 61.74	+1	2779904..2780776	+	290	163847588	-	Caur_2031	-	hypothetical protein
1986	 59.47	0	2780643..2781740	-	365	163847589	-	Caur_2032	-	metallophosphoesterase
1987	 56.95	0	2782033..2783988	+	651	163847590	-	Caur_2033	-	excinuclease ABC, C subunit
1988	 57.59	0	2784005..2785612	+	535	163847591	-	Caur_2034	-	propionyl-CoA carboxylase
1989	 56.92	0	2785620..2786789	+	389	163847592	-	Caur_2035	-	hypothetical protein
1990	 60.78	+1	2786846..2787763	+	305	163847593	-	Caur_2036	-	indigoidine synthase A family protein
1991	 58.38	0	2788000..2789037	+	345	163847594	-	Caur_2037	-	sigma-70 family RNA polymerase sigma factor
1992	 59.79	0	2789662..2791086	+	474	163847595	-	Caur_2038	-	tRNA(Ile)-lysidine synthetase
1993	 54.76	0	2791089..2791634	+	181	163847596	-	Caur_2039	-	hypoxanthine phosphoribosyltransferase
1994	 57.71	0	2791831..2793795	+	654	163847597	-	Caur_2040	-	ATP-dependent metalloprotease FtsH
1995	 51.03	-1	2795385..2796254	-	289	163847598	-	Caur_2041	-	ABC-2 type transporter
1996	 57.80	0	2796581..2797561	-	326	163847599	-	Caur_2042	-	2-dehydropantoate 2-reductase
1997	 51.20	-1	2797589..2798545	-	318	163847600	-	Caur_2043	-	pantothenate kinase
1998	 58.02	0	2798572..2800074	-	500	163847601	-	Caur_2044	-	AMP-dependent synthetase and ligase
1999	 59.40	0	2800122..2801732	-	536	163847602	-	Caur_2045	-	gamma-glutamyltransferase
2000	 52.96	-1	2802386..2802655	+	89	163847603	-	Caur_2046	-	ribosomal protein S15
2001	 56.48	0	2802894..2805161	+	755	163847604	-	Caur_2047	-	polynucleotide phosphorylase/polyadenylase
2002	 58.69	0	2805279..2806130	+	283	163847605	-	Caur_2048	-	alpha/beta hydrolase fold-containing protein
2003	 55.67	0	2806320..2808011	+	563	163847606	-	Caur_2049	-	ATP-dependent DNA helicase RecQ
2004	 56.06	0	2808493..2809020	-	175	163847607	-	Caur_2050	-	hypothetical protein
2005	 56.69	0	2809017..2811452	-	811	163847608	-	Caur_2051	-	hypothetical protein
2006	 53.88	0	2811632..2812984	+	450	163847609	-	Caur_2052	-	signal recognition particle protein
2007	 53.33	0	2813130..2813399	+	89	163847610	-	Caur_2053	-	ribosomal protein S16
2008	 51.75	-1	2813422..2813649	+	75	163847611	-	Caur_2054	-	RNA-binding protein
2009	 53.92	0	2813713..2814222	+	169	163847612	-	Caur_2055	-	16S rRNA processing protein RimM
2010	 55.97	0	2814226..2816226	-	666	163847613	-	Caur_2056	-	PAS sensor protein
2011	 55.83	0	2816252..2816869	-	205	163847614	-	Caur_2057	-	phosphoribosyl-ATP diphosphatase
2012	 57.57	0	2816928..2818466	-	512	163847615	-	Caur_2058	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
2013	 57.55	0	2818536..2819336	-	266	163847616	-	Caur_2059	-	hypothetical protein
2014	 51.19	-1	2819385..2819972	-	195	163847617	-	Caur_2060	-	hypothetical protein
2015	 52.53	-1	2820039..2820533	-	164	163847618	-	Caur_2061	-	roadblock/LC7 family protein
2016	 56.56	0	2820605..2820970	-	121	163847619	-	Caur_2062	-	roadblock/LC7 family protein
2017	 52.53	-1	2821049..2821345	-	98	163847620	-	Caur_2063	-	hypothetical protein
2018	 55.66	0	2821791..2823362	+	523	163847621	-	Caur_2064	-	PAS sensor protein
2019	 58.89	0	2823511..2824719	+	402	163847622	-	Caur_2065	-	hypothetical protein
2020	 55.77	0	2824837..2825790	+	317	163847623	-	Caur_2066	-	thioredoxin reductase
2021	 56.08	0	2825871..2826125	+	84	163847624	-	Caur_2067	-	hypothetical protein
2022	 59.40	0	2826202..2826903	-	233	163847625	-	Caur_2068	-	hydrolase
2023	 56.37	0	2826918..2827286	-	122	163847626	-	Caur_2069	-	response regulator receiver
2024	 56.56	0	2827359..2828624	-	421	163847627	-	Caur_2070	-	Glu/Leu/Phe/Val dehydrogenase
2025	 59.75	0	2828900..2829550	-	216	163847628	-	Caur_2071	-	GCN5-related N-acetyltransferase
2026	 60.34	0	2830118..2830876	-	252	163847629	-	Caur_2072	-	RNA methyltransferase
2027	 59.45	0	2830926..2832047	-	373	163847630	-	Caur_2073	-	chaperone protein DnaJ
2028	 56.01	0	2832110..2833957	-	615	163847631	-	Caur_2074	-	chaperone protein DnaK
2029	 57.00	0	2833997..2834596	-	199	163847632	-	Caur_2075	-	GrpE protein
2030	 58.36	0	2834627..2835745	-	372	163847633	-	Caur_2076	-	heat-inducible transcription repressor HrcA
2031	 49.00	-2	2836018..2838225	-	735	163847634	-	Caur_2077	-	hypothetical protein
2032	 51.96	-1	2838291..2839901	-	536	163847635	-	Caur_2078	-	cell surface glycoprotein (s-layer protein)-like protein
2033	 58.96	0	2840647..2841204	-	185	163847636	-	Caur_2079	-	hypothetical protein
2034	 58.14	0	2841445..2845023	+	1192	163847637	-	Caur_2080	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
2035	 56.71	0	2845020..2846084	+	354	163847638	-	Caur_2081	-	dihydroorotate dehydrogenase
2036	 58.22	0	2846395..2847069	+	224	163847639	-	Caur_2082	-	regulatory protein TetR
2037	 56.20	0	2847097..2848434	+	445	163847640	-	Caur_2083	-	Na+/melibiose symporter and related transporter-like protein
2038	 57.75	0	2848431..2849855	+	474	163847641	-	Caur_2084	-	pyridoxal-dependent decarboxylase
2039	 60.43	0	2849950..2852484	+	844	163847642	-	Caur_2085	-	thiamine pyrophosphate protein central region
2040	 56.97	0	2852539..2853930	+	463	163847643	-	Caur_2086	-	peptidase M20
2041	 58.97	0	2854594..2855853	-	419	163847644	-	Caur_2087	-	geranylgeranyl reductase
2042	 56.06	0	2855883..2856815	-	310	163847645	-	Caur_2088	-	bacteriochlorophyll/chlorophyll a synthase
2043	 52.61	-1	2856880..2858124	-	414	163847646	-	Caur_2089	-	hypothetical protein
2044	 54.60	0	2858373..2858546	-	57	163847647	-	Caur_2090	-	hypothetical protein
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.