IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
148	 54.66	0	191655..192728	-	357	163845751	-	Caur_0152	-	hypothetical protein
149	 58.05	0	192841..193362	-	173	163845752	-	Caur_0153	-	dual specificity protein phosphatase
150	 53.13	0	193471..193965	+	164	163845753	-	Caur_0154	-	hypothetical protein
151	 59.61	0	193970..194833	+	287	163845754	-	Caur_0155	-	methyltransferase type 12
152	 58.07	0	194826..195209	+	127	163845755	-	Caur_0156	-	dihydroneopterin aldolase
153	 61.41	+1	195206..195871	+	221	163845756	-	Caur_0157	-	5-amino-6-(5-phosphoribosylamino)uracil reductase
154	 59.43	0	195897..196919	+	340	163845757	-	Caur_0158	-	alcohol dehydrogenase
155	 58.27	0	197111..197491	+	126	163845758	-	Caur_0159	-	putative 6-pyruvoyl tetrahydropterin synthase
156	 62.00	+1	197496..198545	+	349	163845759	-	Caur_0160	-	glycosyl transferase group 1
157	 55.05	0	198653..199771	+	372	163845760	-	Caur_0161	-	hypothetical protein
158	 52.85	-1	200038..200616	+	192	163845761	-	Caur_0162	-	hypothetical protein
159	 58.12	0	201720..203462	+	580	163845762	-	Caur_0163	-	acetolactate synthase, large subunit, biosynthetic type
160	 58.33	0	203501..204040	+	179	163845763	-	Caur_0164	-	acetolactate synthase, small subunit
161	 59.63	0	204138..205160	+	340	163845764	-	Caur_0165	-	ketol-acid reductoisomerase
162	 58.76	0	205232..206938	+	568	163845765	-	Caur_0166	-	2-isopropylmalate synthase
163	 58.71	0	207061..207915	+	284	163845766	-	Caur_0167	-	prephenate dehydratase
164	 59.51	0	207940..209364	+	474	163845767	-	Caur_0168	-	isopropylmalate isomerase large subunit
165	 56.93	0	209376..209981	+	201	163845768	-	Caur_0169	-	3-isopropylmalate dehydratase, small subunit
166	 62.33	+1	211032..212369	-	445	163845769	-	Caur_0170	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
167	 58.59	0	212868..215813	-	981	163845770	-	Caur_0171	-	glycosyl transferase family protein
168	 62.39	+1	215985..217481	+	498	163845771	-	Caur_0172	-	hypothetical protein
169	 60.43	0	218482..219540	-	352	163845772	-	Caur_0173	-	dehydratase
170	 60.74	+1	219562..220608	-	348	163845773	-	Caur_0174	-	HpcH/HpaI aldolase
171	 61.71	+1	220660..221889	-	409	163845774	-	Caur_0175	-	L-carnitine dehydratase/bile acid-inducible protein F
172	 66.42	+2	222002..222409	-	135	163845775	-	Caur_0176	-	hypothetical protein
173	 66.20	+2	222384..223025	-	213	163845776	-	Caur_0177	-	hypothetical protein
174	 60.76	+1	223035..224252	-	405	163845777	-	Caur_0178	-	L-carnitine dehydratase/bile acid-inducible protein F
175	 58.55	0	224515..225882	-	455	163845778	-	Caur_0179	-	L-carnitine dehydratase/bile acid-inducible protein F
176	 61.80	+1	226187..227029	+	280	163845779	-	Caur_0180	-	hypothetical protein
177	 53.12	0	228787..230322	+	511	163845780	-	Caur_0181	-	hypothetical protein
178	 52.43	-1	230354..231175	+	273	163845781	-	Caur_0182	-	hypothetical protein
179	 58.51	0	231269..232126	-	285	163845782	-	Caur_0183	-	formate dehydrogenase family accessory protein FdhD
180	 58.01	0	232142..234382	-	746	163845783	-	Caur_0184	-	oxidoreductase alpha (molybdopterin) subunit
181	 58.88	0	235459..235869	-	136	163845784	-	Caur_0186	-	hypothetical protein
182	 59.02	0	235921..237333	-	470	163845785	-	Caur_0187	-	glycosyl transferase group 1
183	 57.71	0	237333..237857	-	174	163845786	-	Caur_0188	-	ThiJ/PfpI domain-containing protein
184	 57.22	0	237972..238892	-	306	163845787	-	Caur_0189	-	diguanylate cyclase
185	 57.02	0	239302..240213	-	303	163845788	-	Caur_0190	-	hypothetical protein
186	 53.91	0	240860..241345	-	161	163845789	-	Caur_0191	-	hypothetical protein
187	 55.57	0	241621..243909	+	762	163845790	-	Caur_0192	-	PAS sensor protein
188	 57.41	0	244924..246468	-	514	163845791	-	Caur_0193	-	nicotinate phosphoribosyltransferase
189	 57.79	0	247214..248317	-	367	163845792	-	Caur_0194	-	ABC-3 protein
190	 59.82	0	248330..249205	-	291	163845793	-	Caur_0195	-	ABC-3 protein
191	 60.23	0	249226..250002	-	258	163845794	-	Caur_0196	-	ABC transporter related
192	 55.66	0	250016..250933	-	305	163845795	-	Caur_0197	-	periplasmic solute binding protein
193	 55.72	0	251566..252552	-	328	163845796	-	Caur_0198	-	GCN5-related N-acetyltransferase
194	 60.61	+1	252795..253025	-	76	163845797	-	Caur_0199	-	hypothetical protein
195	 56.12	0	254264..255088	-	274	163845798	-	Caur_0200	-	hypothetical protein
196	 62.86	+1	255295..259257	-	1320	163845799	-	Caur_0201	-	beta strand repeat-containing protein
197	 58.22	0	259575..260486	+	303	163845800	-	Caur_0202	-	transporter DMT superfamily protein
198	 59.22	0	260447..261064	-	205	163845801	-	Caur_0203	-	hypothetical protein
199	 59.25	0	261061..262017	-	318	163845802	-	Caur_0204	-	LPPG:FO 2-phospho-L-lactate transferase
200	 60.21	0	262084..262935	-	283	163845803	-	Caur_0205	-	thioredoxin domain-containing protein
201	 60.00	0	263035..263784	-	249	163845804	-	Caur_0206	-	hypothetical protein
202	 54.76	0	264040..264711	+	223	163845805	-	Caur_0207	-	TrkA domain-containing protein
203	 56.43	0	264708..266084	+	458	163845806	-	Caur_0208	-	H(+)-transporting two-sector ATPase
204	 59.31	0	266088..267269	+	393	163845807	-	Caur_0209	-	oxygen-independent coproporphyrinogen III oxidase
205	 59.54	0	267365..268417	+	350	163845808	-	Caur_0210	-	NifR3 family TIM-barrel protein
206	 56.98	0	269002..271686	+	894	163845809	-	Caur_0211	-	polymorphic outer membrane protein
207	 59.63	0	271968..272450	+	160	163845810	-	Caur_0212	-	hypothetical protein
208	 57.97	0	272460..273275	+	271	163845811	-	Caur_0213	-	phospholipid/glycerol acyltransferase
209	 55.48	0	273196..274053	-	285	163845812	-	Caur_0214	-	hypothetical protein
210	 48.33	-2	275167..275586	+	139	163845813	-	Caur_0215	-	response regulator receiver
211	 58.31	0	275669..276721	-	350	163845814	-	Caur_0216	-	hypothetical protein
212	 56.86	0	276718..277767	-	349	163845815	-	Caur_0217	-	aspartate-semialdehyde dehydrogenase
213	 53.65	0	278042..278425	+	127	163845816	-	Caur_0218	-	hypothetical protein
214	 53.15	0	278675..279451	-	258	163845817	-	Caur_0219	-	rare lipoprotein A
215	 55.57	0	279577..281388	-	603	163845818	-	Caur_0220	-	oligoendopeptidase F
216	 54.05	0	281835..282563	+	242	163845819	-	Caur_0221	-	Ion transport 2 domain-containing protein
217	 55.71	0	282707..283801	-	364	163845820	-	Caur_0222	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
218	 59.02	0	284138..284686	+	182	163845821	-	Caur_0223	-	hypothetical protein
219	 58.65	0	286667..287926	-	419	163845822	-	Caur_0224	-	major facilitator transporter
220	 58.12	0	288301..289482	+	393	163845823	-	Caur_0225	-	beta-lactamase domain-containing protein
221	 57.43	0	289565..289813	+	82	163845824	-	Caur_0226	-	SirA family protein
222	 56.25	0	289865..290440	+	191	163845825	-	Caur_0227	-	hypothetical protein
223	 55.37	0	290538..290900	+	120	163845826	-	Caur_0228	-	rhodanese domain-containing protein
224	 59.80	0	290928..291437	+	169	163845827	-	Caur_0229	-	hypothetical protein
225	 57.56	0	291449..293215	+	588	163845828	-	Caur_0230	-	sulfate transporter
226	 55.23	0	293305..293715	+	136	163845829	-	Caur_0231	-	rhodanese domain-containing protein
227	 57.32	0	294090..294485	-	131	163845830	-	Caur_0232	-	hypothetical protein
228	 51.04	-1	294482..295108	-	208	163845831	-	Caur_0233	-	hypothetical protein
229	 60.67	+1	295186..296352	-	388	163845832	-	Caur_0234	-	acetyl-CoA acetyltransferase-like protein
230	 60.48	+1	296371..297420	-	349	163845833	-	Caur_0235	-	hypothetical protein
231	 58.41	0	297617..298936	-	439	163845834	-	Caur_0236	-	hydroxymethylglutaryl-CoA reductase, degradative
232	 57.40	0	299078..299800	+	240	163845835	-	Caur_0237	-	hypothetical protein
233	 53.81	0	299778..301706	-	642	163845836	-	Caur_0238	-	PAS sensor protein
234	 49.97	-1	301866..303314	-	482	163845837	-	Caur_0239	-	non-specific serine/threonine protein kinase
235	 59.91	0	303685..304764	+	359	163845838	-	Caur_0240	-	peptidase M24
236	 59.06	0	305149..307278	+	709	163845839	-	Caur_0241	-	DNA ligase, NAD-dependent
237	 56.46	0	308385..309560	-	391	163845840	-	Caur_0242	-	hypothetical protein
238	 58.11	0	309663..311531	-	622	163845841	-	Caur_0243	-	selenocysteine-specific translation elongation factor
239	 57.96	0	311572..312168	+	198	163845842	-	Caur_0244	-	DNA-3-methyladenine glycosylase II
240	 58.83	0	312240..312992	+	250	163845843	-	Caur_0245	-	ribonuclease PH
241	 56.54	0	313069..314322	+	417	163845844	-	Caur_0246	-	TPR repeat-containing protein
242	 57.05	0	314703..315731	+	342	163845845	-	Caur_0247	-	UV damage repair endonuclease-like protein
243	 56.40	0	316267..317016	+	249	163845846	-	Caur_0248	-	peptidylprolyl isomerase
244	 58.48	0	317293..319125	+	610	163845847	-	Caur_0249	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
245	 57.12	0	319155..320180	+	341	163845848	-	Caur_0250	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
246	 57.19	0	320681..322705	-	674	163845849	-	Caur_0251	-	hypothetical protein
247	 51.54	-1	322747..323394	-	215	163845850	-	Caur_0252	-	hypothetical protein
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.