IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1872	 54.04	0	2632703..2633605	-	300	163847475	-	Caur_1915	-	hypothetical protein
1873	 54.64	0	2633602..2635887	-	761	163847476	-	Caur_1916	-	hypothetical protein
1874	 56.83	0	2636317..2637780	+	487	163847477	-	Caur_1917	-	regulatory protein LuxR
1875	 58.35	0	2637862..2639040	-	392	163847478	-	Caur_1918	-	glycosyl transferase group 1
1876	 54.58	0	2639134..2640291	-	385	163847479	-	Caur_1919	-	glycosyl transferase group 1
1877	 56.17	0	2640291..2642204	-	637	163847480	-	Caur_1920	-	hypothetical protein
1878	 52.40	-1	2642587..2643336	-	249	163847481	-	Caur_1921	-	hypothetical protein
1879	 56.90	0	2643464..2644528	+	354	163847482	-	Caur_1922	-	homoserine dehydrogenase
1880	 54.45	0	2644525..2647275	-	916	163847483	-	Caur_1923	-	regulatory protein LuxR
1881	 57.99	0	2647831..2648994	+	387	163847484	-	Caur_1924	-	periplasmic sugar-binding protein
1882	 52.03	-1	2649117..2650640	+	507	163847485	-	Caur_1925	-	ABC transporter related
1883	 53.00	-1	2650697..2651911	+	404	163847486	-	Caur_1926	-	inner-membrane translocator
1884	 57.08	0	2652292..2653365	+	357	163847487	-	Caur_1927	-	response regulator receiver
1885	 56.81	0	2653362..2654954	-	530	163847488	-	Caur_1928	-	ABC transporter related
1886	 56.46	0	2655033..2660108	-	1691	163847489	-	Caur_1929	-	DEAD/DEAH box helicase domain-containing protein
1887	 59.73	0	2660120..2661142	-	340	163847490	-	Caur_1930	-	DNA polymerase III, delta prime subunit
1888	 59.53	0	2661227..2662642	-	471	163847491	-	Caur_1931	-	3-oxoacyl-(acyl-carrier-protein) synthase 2
1889	 58.36	0	2662752..2663858	+	368	163847492	-	Caur_1932	-	histidinol-phosphate aminotransferase
1890	 58.40	0	2663855..2664640	+	261	163847493	-	Caur_1933	-	inositol monophosphatase
1891	 54.43	0	2664637..2664963	+	108	163847494	-	Caur_1934	-	MazG nucleotide pyrophosphohydrolase
1892	 56.80	0	2664935..2665552	+	205	163847495	-	Caur_1935	-	imidazoleglycerol-phosphate dehydratase
1893	 58.36	0	2665549..2666535	+	328	163847496	-	Caur_1936	-	putative integral membrane protein
1894	 61.61	+1	2666539..2666973	-	144	163847497	-	Caur_1937	-	transposase IS4 family protein
1895	 65.32	+2	2666973..2667344	-	123	163847498	-	Caur_1938	-	TIS1421-transposase protein A
1896	 57.51	0	2667396..2667974	-	192	163847499	-	Caur_1939	-	hypothetical protein
1897	 57.27	0	2668262..2669464	+	400	163847500	-	Caur_1940	-	acetylornithine and succinylornithine aminotransferase
1898	 55.07	0	2669577..2670869	+	430	163847501	-	Caur_1941	-	adenylosuccinate synthase
1899	 58.17	0	2671319..2672095	-	258	163847502	-	Caur_1942	-	nucleotidyl transferase
1900	 56.32	0	2672095..2672838	-	247	163847503	-	Caur_1943	-	peptidase A24A domain-containing protein
1901	 58.97	0	2672835..2673692	-	285	163847504	-	Caur_1944	-	shikimate 5-dehydrogenase
1902	 55.74	0	2673683..2674753	-	356	163847505	-	Caur_1945	-	aminodeoxychorismate lyase
1903	 56.88	0	2675266..2675694	+	142	163847506	-	Caur_1946	-	TPR repeat-containing protein
1904	 56.28	0	2675713..2677041	+	442	163847507	-	Caur_1947	-	threonine synthase
1905	 55.36	0	2677324..2678331	+	335	163847508	-	Caur_1948	-	Sulfate transporter/antisigma-factor antagonist STAS
1906	 55.83	0	2678796..2679995	+	399	163847509	-	Caur_1949	-	(Uracil-5)-methyltransferase
1907	 57.34	0	2680022..2680729	-	235	163847510	-	Caur_1950	-	blue (type1) copper domain-containing protein
1908	 54.00	0	2680841..2681764	+	307	163847511	-	Caur_1951	-	hypothetical protein
1909	 55.01	0	2682270..2685092	+	940	163847512	-	Caur_1952	-	diguanylate cyclase
1910	 58.19	0	2685096..2687159	+	687	163847513	-	Caur_1953	-	hypothetical protein
1911	 55.99	0	2687170..2689164	+	664	163847514	-	Caur_1954	-	cellulose synthase (UDP-forming)
1912	 54.28	0	2689187..2689525	+	112	163847515	-	Caur_1955	-	anti-anti-sigma factor
1913	 53.08	0	2689525..2689995	+	156	163847516	-	Caur_1956	-	hypothetical protein
1914	 60.47	+1	2690114..2690500	-	128	163847517	-	Caur_1957	-	peptidoglycan-binding LysM
1915	 56.09	0	2690544..2690978	-	144	163847518	-	Caur_1958	-	hypothetical protein
1916	 55.06	0	2690979..2691383	-	134	163847519	-	Caur_1959	-	hypothetical protein
1917	 58.22	0	2691459..2692583	-	374	163847520	-	Caur_1960	-	glycosyl transferase family protein
1918	 56.27	0	2692635..2693942	-	435	163847521	-	Caur_1961	-	hypothetical protein
1919	 54.67	0	2693982..2694623	-	213	163847522	-	Caur_1962	-	methyltransferase type 11
1920	 59.34	0	2694858..2695826	+	322	163847523	-	Caur_1963	-	alcohol dehydrogenase
1921	 60.39	0	2695934..2697334	+	466	163847524	-	Caur_1964	-	aspartate kinase
1922	 44.96	-2	2697935..2699164	-	409	163847525	-	Caur_1965	-	appr-1-p processing domain-containing protein
1923	 58.62	0	2699483..2700538	-	351	163847526	-	Caur_1966	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1924	 60.00	0	2700636..2701535	-	299	163847527	-	Caur_1967	-	dihydrodipicolinate synthetase
1925	 54.12	0	2701660..2702727	+	355	163847528	-	Caur_1968	-	glucose-1-phosphate thymidyltransferase
1926	 60.50	+1	2702736..2703611	-	291	163847529	-	Caur_1969	-	uroporphyrin-III C/tetrapyrrole methyltransferase
1927	 58.08	0	2703615..2704592	-	325	163847530	-	Caur_1970	-	NAD-dependent epimerase/dehydratase
1928	 55.34	0	2705574..2706041	+	155	163847531	-	Caur_1971	-	CBS domain-containing protein
1929	 56.33	0	2706609..2707682	+	357	163847532	-	Caur_1972	-	pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
1930	 56.22	0	2707775..2708770	+	331	163847533	-	Caur_1973	-	transketolase central region
1931	 62.68	+1	2708800..2710152	+	450	163847534	-	Caur_1974	-	dihydrolipoyllysine-residue succinyltransferase
1932	 58.64	0	2710361..2711257	+	298	163847535	-	Caur_1975	-	rhodanese domain-containing protein
1933	 58.03	0	2712050..2713636	-	528	163847536	-	Caur_1976	-	proton-translocating NADH-quinone oxidoreductase, chain N
1934	 56.94	0	2713660..2715171	-	503	163847537	-	Caur_1977	-	proton-translocating NADH-quinone oxidoreductase, chain M
1935	 59.58	0	2715216..2716880	-	554	163847538	-	Caur_1978	-	proton-translocating NADH-quinone oxidoreductase, chain M
1936	 58.89	0	2716884..2719082	-	732	163847539	-	Caur_1979	-	proton-translocating NADH-quinone oxidoreductase, chain L
1937	 53.46	0	2719216..2719533	-	105	163847540	-	Caur_1980	-	NADH-ubiquinone oxidoreductase chain 4L
1938	 56.84	0	2719536..2720186	-	216	163847541	-	Caur_1981	-	NADH-ubiquinone/plastoquinone oxidoreductase chain 6
1939	 55.63	0	2720239..2721561	-	440	163847542	-	Caur_1982	-	NADH dehydrogenase (quinone)
1940	 61.10	+1	2721579..2722655	-	358	163847543	-	Caur_1983	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1941	 54.68	0	2722652..2723761	-	369	163847544	-	Caur_1984	-	NADH dehydrogenase I, D subunit
1942	 56.51	0	2723837..2724358	-	173	163847545	-	Caur_1985	-	NADH (or F420H2) dehydrogenase, subunit C
1943	 58.99	0	2724351..2725145	-	264	163847546	-	Caur_1986	-	NADH-quinone oxidoreductase, B subunit
1944	 49.30	-2	2725148..2725504	-	118	163847547	-	Caur_1987	-	NADH-ubiquinone/plastoquinone oxidoreductase chain 3
1945	 55.41	0	2725828..2726289	-	153	163847548	-	Caur_1988	-	forkhead-associated protein
1946	 55.93	0	2726293..2727009	-	238	163847549	-	Caur_1989	-	forkhead-associated protein
1947	 61.95	+1	2727276..2727953	-	225	163847550	-	Caur_1990	-	peptidase M22 glycoprotease
1948	 54.70	0	2727953..2728537	-	194	163847551	-	Caur_1991	-	hypothetical protein
1949	 56.56	0	2728578..2728943	-	121	163847552	-	Caur_1992	-	hypothetical protein
1950	 56.96	0	2729156..2730247	+	363	163847553	-	Caur_1993	-	periplasmic solute binding protein
1951	 57.07	0	2730338..2731171	+	277	163847554	-	Caur_1994	-	ABC transporter related
1952	 56.99	0	2731168..2732004	+	278	163847555	-	Caur_1995	-	ABC-3 protein
1953	 59.30	0	2732088..2734706	+	872	163847556	-	Caur_1996	-	putative poly-gamma-glutamate biosynthesis (capsule formation)-like protein
1954	 56.60	0	2734843..2735418	+	191	163847557	-	Caur_1997	-	response regulator receiver
1955	 61.90	+1	2735629..2736237	+	202	163847558	-	Caur_1998	-	hypothetical protein
1956	 57.91	0	2736401..2737348	+	315	163847559	-	Caur_1999	-	putative sulfite oxidase subunit YedY
1957	 56.12	0	2738160..2738813	+	217	163847560	-	Caur_2000	-	ferric reductase domain-containing protein
1958	 54.25	0	2738776..2739516	+	246	163847561	-	Caur_2001	-	response regulator receiver
1959	 61.19	+1	2741799..2742839	-	346	163847562	-	Caur_2002	-	2-dehydropantoate 2-reductase
1960	 53.42	0	2742990..2743457	+	155	163847563	-	Caur_2003	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1961	 51.98	-1	2744028..2745089	-	353	163847564	-	Caur_2004	-	Sulfate transporter/antisigma-factor antagonist STAS
1962	 59.15	0	2745247..2746137	-	296	163847565	-	Caur_2005	-	formyl transferase domain-containing protein
1963	 55.46	0	2746168..2746506	+	112	163847566	-	Caur_2006	-	hypothetical protein
1964	 59.65	0	2746552..2747820	-	422	163847567	-	Caur_2007	-	phosphoribosylglycinamide synthetase
1965	 59.45	0	2747845..2749230	-	461	163847568	-	Caur_2008	-	radical SAM domain-containing protein
1966	 56.26	0	2750213..2751154	-	313	163847569	-	Caur_2009	-	transglutaminase domain-containing protein
1967	 53.25	0	2751189..2752142	-	317	163847570	-	Caur_2010	-	hypothetical protein
1968	 54.94	0	2752208..2753674	-	488	163847571	-	Caur_2011	-	hypothetical protein
1969	 54.58	0	2753964..2754848	-	294	163847572	-	Caur_2012	-	stearoyl-CoA 9-desaturase
1970	 59.12	0	2756420..2757691	-	423	163847573	-	Caur_2013	-	carboxyl-terminal protease
1971	 56.64	0	2757701..2758777	-	358	163847574	-	Caur_2014	-	cellulase
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.