IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1824	 57.23	0	2562148..2563122	+	324	163847427	-	Caur_1865	-	ATPase
1825	 58.10	0	2563149..2563358	+	69	163847428	-	Caur_1866	-	hypothetical protein
1826	 59.45	0	2563348..2565357	+	669	163847429	-	Caur_1867	-	hypothetical protein
1827	 62.63	+1	2566374..2566844	+	156	163847430	-	Caur_1869	-	hypothetical protein
1828	 60.96	+1	2566848..2567618	+	256	163847431	-	Caur_1870	-	short-chain dehydrogenase/reductase SDR
1829	 56.47	0	2567633..2567887	+	84	163847432	-	Caur_1871	-	molybdopterin converting factor, subunit 1
1830	 59.90	0	2567891..2568304	+	137	163847433	-	Caur_1872	-	molybdopterin biosynthesis MoaE protein
1831	 58.78	0	2568315..2569151	+	278	163847434	-	Caur_1873	-	formamidopyrimidine-DNA glycosylase
1832	 57.14	0	2569249..2569878	+	209	163847435	-	Caur_1874	-	response regulator receiver
1833	 50.18	-1	2570243..2571382	-	379	163847436	-	Caur_1875	-	SMC domain-containing protein
1834	 57.58	0	2572023..2572616	+	197	163847437	-	Caur_1876	-	metal-dependent phosphohydrolase
1835	 59.45	0	2572620..2573741	-	373	163847438	-	Caur_1877	-	Cys/Met metabolism pyridoxal-phosphate-dependent protein
1836	 56.26	0	2573907..2575145	+	412	163847439	-	Caur_1878	-	glycosyl transferase group 1
1837	 56.45	0	2576726..2577508	-	260	163847440	-	Caur_1880	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
1838	 58.36	0	2577604..2579577	-	657	163847441	-	Caur_1881	-	succinate dehydrogenase flavoprotein subunit
1839	 50.56	-1	2579616..2580335	-	239	163847442	-	Caur_1882	-	succinate dehydrogenase/fumarate reductase cytochrome b subunit
1840	 52.63	-1	2581781..2583397	-	538	163847443	-	Caur_1883	-	AAA ATPase
1841	 53.45	0	2583786..2584292	+	168	163847444	-	Caur_1884	-	hypothetical protein
1842	 54.93	0	2584289..2585557	+	422	163847445	-	Caur_1885	-	hypothetical protein
1843	 55.85	0	2585614..2586288	+	224	163847446	-	Caur_1886	-	peptidase M23B
1844	 53.03	-1	2588010..2588984	-	324	163847447	-	Caur_1887	-	TPR repeat-containing protein
1845	 55.13	0	2591138..2592784	+	548	163847448	-	Caur_1888	-	acyl-CoA synthetase
1846	 55.39	0	2593712..2594314	+	200	163847449	-	Caur_1889	-	beta-lactamase domain-containing protein
1847	 57.56	0	2594543..2595091	+	182	163847450	-	Caur_1890	-	phosphoribosyltransferase
1848	 58.25	0	2595084..2596010	+	308	163847451	-	Caur_1891	-	aspartate carbamoyltransferase
1849	 60.23	0	2596023..2597483	+	486	163847452	-	Caur_1892	-	dihydroorotase, multifunctional complex type
1850	 58.14	0	2597820..2598851	+	343	163847453	-	Caur_1893	-	hypothetical protein
1851	 58.43	0	2599148..2600665	-	505	163847454	-	Caur_1894	-	carboxypeptidase Taq
1852	 58.44	0	2600682..2601872	-	396	163847455	-	Caur_1895	-	aminotransferase class I and II
1853	 58.84	0	2602029..2602424	+	131	163847456	-	Caur_1896	-	hypothetical protein
1854	 57.26	0	2603342..2605786	-	814	163847457	-	Caur_1897	-	Alpha-glucosidase
1855	 55.11	0	2606097..2606546	+	149	163847458	-	Caur_1898	-	hypothetical protein
1856	 55.94	0	2606543..2606887	+	114	163847459	-	Caur_1899	-	DNA polymerase beta subunit
1857	 52.13	-1	2606914..2608626	-	570	163847460	-	Caur_1900	-	AAA ATPase
1858	 58.20	0	2608972..2611488	+	838	163847461	-	Caur_1901	-	1A family penicillin-binding protein
1859	 60.43	0	2611476..2612132	-	218	163847462	-	Caur_1902	-	dephospho-CoA kinase
1860	 59.06	0	2612129..2614099	-	656	163847463	-	Caur_1903	-	amidohydrolase
1861	 62.50	+1	2614201..2615592	+	463	163847464	-	Caur_1904	-	MATE efflux family protein
1862	 57.23	0	2616774..2618066	+	430	163847465	-	Caur_1905	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1863	 55.90	0	2618802..2619479	-	225	163847466	-	Caur_1906	-	hypothetical protein
1864	 57.39	0	2619549..2619947	-	132	163847467	-	Caur_1907	-	hypothetical protein
1865	 59.16	0	2620197..2620955	-	252	163847468	-	Caur_1908	-	hypothetical protein
1866	 58.92	0	2621386..2624547	+	1053	163847469	-	Caur_1909	-	peptidase S8 and S53 subtilisin kexin sedolisin
1867	 60.32	0	2624791..2627202	-	803	163847470	-	Caur_1910	-	hypothetical protein
1868	 57.97	0	2627263..2628423	+	386	163847471	-	Caur_1911	-	aminotransferase class I and II
1869	 57.55	0	2628435..2628752	+	105	163847472	-	Caur_1912	-	hypothetical protein
1870	 57.83	0	2629715..2631751	+	678	163847473	-	Caur_1913	-	hypothetical protein
1871	 64.05	+1	2632026..2632445	-	139	163847474	-	Caur_1914	-	hypothetical protein
1872	 54.04	0	2632703..2633605	-	300	163847475	-	Caur_1915	-	hypothetical protein
1873	 54.64	0	2633602..2635887	-	761	163847476	-	Caur_1916	-	hypothetical protein
1874	 56.83	0	2636317..2637780	+	487	163847477	-	Caur_1917	-	regulatory protein LuxR
1875	 58.35	0	2637862..2639040	-	392	163847478	-	Caur_1918	-	glycosyl transferase group 1
1876	 54.58	0	2639134..2640291	-	385	163847479	-	Caur_1919	-	glycosyl transferase group 1
1877	 56.17	0	2640291..2642204	-	637	163847480	-	Caur_1920	-	hypothetical protein
1878	 52.40	-1	2642587..2643336	-	249	163847481	-	Caur_1921	-	hypothetical protein
1879	 56.90	0	2643464..2644528	+	354	163847482	-	Caur_1922	-	homoserine dehydrogenase
1880	 54.45	0	2644525..2647275	-	916	163847483	-	Caur_1923	-	regulatory protein LuxR
1881	 57.99	0	2647831..2648994	+	387	163847484	-	Caur_1924	-	periplasmic sugar-binding protein
1882	 52.03	-1	2649117..2650640	+	507	163847485	-	Caur_1925	-	ABC transporter related
1883	 53.00	-1	2650697..2651911	+	404	163847486	-	Caur_1926	-	inner-membrane translocator
1884	 57.08	0	2652292..2653365	+	357	163847487	-	Caur_1927	-	response regulator receiver
1885	 56.81	0	2653362..2654954	-	530	163847488	-	Caur_1928	-	ABC transporter related
1886	 56.46	0	2655033..2660108	-	1691	163847489	-	Caur_1929	-	DEAD/DEAH box helicase domain-containing protein
1887	 59.73	0	2660120..2661142	-	340	163847490	-	Caur_1930	-	DNA polymerase III, delta prime subunit
1888	 59.53	0	2661227..2662642	-	471	163847491	-	Caur_1931	-	3-oxoacyl-(acyl-carrier-protein) synthase 2
1889	 58.36	0	2662752..2663858	+	368	163847492	-	Caur_1932	-	histidinol-phosphate aminotransferase
1890	 58.40	0	2663855..2664640	+	261	163847493	-	Caur_1933	-	inositol monophosphatase
1891	 54.43	0	2664637..2664963	+	108	163847494	-	Caur_1934	-	MazG nucleotide pyrophosphohydrolase
1892	 56.80	0	2664935..2665552	+	205	163847495	-	Caur_1935	-	imidazoleglycerol-phosphate dehydratase
1893	 58.36	0	2665549..2666535	+	328	163847496	-	Caur_1936	-	putative integral membrane protein
1894	 61.61	+1	2666539..2666973	-	144	163847497	-	Caur_1937	-	transposase IS4 family protein
1895	 65.32	+2	2666973..2667344	-	123	163847498	-	Caur_1938	-	TIS1421-transposase protein A
1896	 57.51	0	2667396..2667974	-	192	163847499	-	Caur_1939	-	hypothetical protein
1897	 57.27	0	2668262..2669464	+	400	163847500	-	Caur_1940	-	acetylornithine and succinylornithine aminotransferase
1898	 55.07	0	2669577..2670869	+	430	163847501	-	Caur_1941	-	adenylosuccinate synthase
1899	 58.17	0	2671319..2672095	-	258	163847502	-	Caur_1942	-	nucleotidyl transferase
1900	 56.32	0	2672095..2672838	-	247	163847503	-	Caur_1943	-	peptidase A24A domain-containing protein
1901	 58.97	0	2672835..2673692	-	285	163847504	-	Caur_1944	-	shikimate 5-dehydrogenase
1902	 55.74	0	2673683..2674753	-	356	163847505	-	Caur_1945	-	aminodeoxychorismate lyase
1903	 56.88	0	2675266..2675694	+	142	163847506	-	Caur_1946	-	TPR repeat-containing protein
1904	 56.28	0	2675713..2677041	+	442	163847507	-	Caur_1947	-	threonine synthase
1905	 55.36	0	2677324..2678331	+	335	163847508	-	Caur_1948	-	Sulfate transporter/antisigma-factor antagonist STAS
1906	 55.83	0	2678796..2679995	+	399	163847509	-	Caur_1949	-	(Uracil-5)-methyltransferase
1907	 57.34	0	2680022..2680729	-	235	163847510	-	Caur_1950	-	blue (type1) copper domain-containing protein
1908	 54.00	0	2680841..2681764	+	307	163847511	-	Caur_1951	-	hypothetical protein
1909	 55.01	0	2682270..2685092	+	940	163847512	-	Caur_1952	-	diguanylate cyclase
1910	 58.19	0	2685096..2687159	+	687	163847513	-	Caur_1953	-	hypothetical protein
1911	 55.99	0	2687170..2689164	+	664	163847514	-	Caur_1954	-	cellulose synthase (UDP-forming)
1912	 54.28	0	2689187..2689525	+	112	163847515	-	Caur_1955	-	anti-anti-sigma factor
1913	 53.08	0	2689525..2689995	+	156	163847516	-	Caur_1956	-	hypothetical protein
1914	 60.47	+1	2690114..2690500	-	128	163847517	-	Caur_1957	-	peptidoglycan-binding LysM
1915	 56.09	0	2690544..2690978	-	144	163847518	-	Caur_1958	-	hypothetical protein
1916	 55.06	0	2690979..2691383	-	134	163847519	-	Caur_1959	-	hypothetical protein
1917	 58.22	0	2691459..2692583	-	374	163847520	-	Caur_1960	-	glycosyl transferase family protein
1918	 56.27	0	2692635..2693942	-	435	163847521	-	Caur_1961	-	hypothetical protein
1919	 54.67	0	2693982..2694623	-	213	163847522	-	Caur_1962	-	methyltransferase type 11
1920	 59.34	0	2694858..2695826	+	322	163847523	-	Caur_1963	-	alcohol dehydrogenase
1921	 60.39	0	2695934..2697334	+	466	163847524	-	Caur_1964	-	aspartate kinase
1922	 44.96	-2	2697935..2699164	-	409	163847525	-	Caur_1965	-	appr-1-p processing domain-containing protein
1923	 58.62	0	2699483..2700538	-	351	163847526	-	Caur_1966	-	phospho-2-dehydro-3-deoxyheptonate aldolase
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.