IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1422	 51.16	-1	2011924..2012310	-	128	163847025	-	Caur_1452	-	hypothetical protein
1423	 57.91	0	2012307..2012603	-	98	163847026	-	Caur_1453	-	hypothetical protein
1424	 51.98	-1	2013118..2013471	+	117	163847027	-	Caur_1454	-	hypothetical protein
1425	 57.95	0	2013510..2013773	-	87	163847028	-	Caur_1455	-	hypothetical protein
1426	 57.05	0	2013792..2014592	-	266	163847029	-	Caur_1456	-	methionine aminopeptidase, type I
1427	 58.44	0	2014605..2015528	-	307	163847030	-	Caur_1457	-	methylenetetrahydrofolate reductase
1428	 57.89	0	2015532..2016728	-	398	163847031	-	Caur_1458	-	cystathionine gamma-synthase
1429	 45.99	-2	2016979..2017752	-	257	163847032	-	Caur_1459	-	methyltransferase type 11
1430	 55.74	0	2017866..2018414	-	182	163847033	-	Caur_1460	-	GCN5-related N-acetyltransferase
1431	 58.25	0	2018661..2019848	+	395	163847034	-	Caur_1461	-	acetyl-CoA acetyltransferase
1432	 53.49	0	2019937..2020680	+	247	163847035	-	Caur_1462	-	3-ketoacyl-(acyl-carrier-protein) reductase
1433	 51.52	-1	2020813..2021109	-	98	163847036	-	Caur_1463	-	hypothetical protein
1434	 58.08	0	2021180..2024383	+	1067	163847037	-	Caur_1464	-	transcriptional activator domain-containing protein
1435	 54.64	0	2024483..2024881	+	132	163847038	-	Caur_1465	-	hypothetical protein
1436	 61.72	+1	2025005..2025994	-	329	163847039	-	Caur_1466	-	urea amidolyase related protein
1437	 55.88	0	2026348..2027877	-	509	163847040	-	Caur_1467	-	polysaccharide biosynthesis protein
1438	 55.42	0	2027874..2028842	-	322	163847041	-	Caur_1468	-	glycosyl transferase family protein
1439	 52.20	-1	2029000..2029386	-	128	163847042	-	Caur_1469	-	response regulator receiver
1440	 50.79	-1	2029392..2029832	-	146	163847043	-	Caur_1470	-	RsbW protein, putative
1441	 54.93	0	2029829..2031370	-	513	163847044	-	Caur_1471	-	stage II sporulation E family protein
1442	 53.39	0	2031363..2031701	-	112	163847045	-	Caur_1472	-	anti-anti-sigma factor
1443	 56.34	0	2031759..2033462	-	567	163847046	-	Caur_1473	-	nucleotidyl transferase
1444	 57.31	0	2033467..2034984	-	505	163847047	-	Caur_1474	-	WecB/TagA/CpsF family glycosyl transferase
1445	 52.02	-1	2034999..2035742	-	247	163847048	-	Caur_1475	-	undecaprenyl-phosphate galactose phosphotransferase
1446	 54.58	0	2036461..2038065	+	534	163847049	-	Caur_1476	-	Alpha-L-arabinofuranosidase-like protein
1447	 52.85	-1	2038084..2039328	+	414	163847050	-	Caur_1477	-	hypothetical protein
1448	 52.84	-1	2039481..2040044	-	187	163847051	-	Caur_1478	-	hexapaptide repeat-containing transferase
1449	 52.26	-1	2040355..2041395	+	346	163847052	-	Caur_1479	-	lipopolysaccharide biosynthesis protein
1450	 54.53	0	2041464..2042246	+	260	163847053	-	Caur_1480	-	ATPase involved in chromosome partitioning-like protein
1451	 48.61	-2	2042249..2042392	+	47	163847054	-	Caur_1481	-	hypothetical protein
1452	 52.15	-1	2042427..2043962	+	511	163847055	-	Caur_1482	-	hypothetical protein
1453	 53.66	0	2044069..2044875	+	268	163847056	-	Caur_1483	-	hypothetical protein
1454	 69.94	+2	2048069..2049505	+	478	163847057	-	Caur_1485	-	hypothetical protein
1455	 51.17	-1	2052355..2052567	-	70	163847058	-	Caur_1488	-	hypothetical protein
1456	 65.05	+2	2056641..2057012	+	123	163847059	-	Caur_1492	-	TIS1421-transposase protein A
1457	 63.68	+1	2057012..2057446	+	144	163847060	-	Caur_1493	-	transposase IS4 family protein
1458	 61.78	+1	2057607..2058179	+	190	163847061	-	Caur_1494	-	sigma-70 family RNA polymerase sigma factor
1459	 68.65	+2	2059799..2060605	-	268	163847062	-	Caur_1496	-	transposase IS4 family protein
1460	 50.70	-1	2061025..2061237	+	70	163847063	-	Caur_1497	-	hypothetical protein
1461	 62.13	+1	2062932..2063504	+	190	163847064	-	Caur_1499	-	sigma-70 family RNA polymerase sigma factor
1462	 54.20	0	2064167..2065498	-	443	163847065	-	Caur_1500	-	lipopolysaccharide biosynthesis protein
1463	 57.20	0	2065572..2067008	-	478	163847066	-	Caur_1501	-	hypothetical protein
1464	 56.19	0	2067266..2067580	-	104	163847067	-	Caur_1502	-	hypothetical protein
1465	 56.37	0	2067632..2068000	-	122	163847068	-	Caur_1503	-	HEPN domain-containing protein
1466	 56.09	0	2068106..2069476	-	456	163847069	-	Caur_1504	-	exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
1467	 43.88	-2	2070524..2071462	-	312	163847070	-	Caur_1505	-	hypothetical protein
1468	 38.68	-2	2071532..2071774	-	80	163847071	-	Caur_1506	-	hypothetical protein
1469	 53.07	0	2071776..2072540	-	254	163847072	-	Caur_1507	-	WecB/TagA/CpsF family glycosyl transferase
1470	 41.55	-2	2072543..2073637	-	364	163847073	-	Caur_1508	-	glycosyl transferase group 1
1471	 49.83	-1	2073669..2074826	-	385	163847074	-	Caur_1509	-	glycosyl transferase group 1
1472	 47.62	-2	2074823..2076082	-	419	163847075	-	Caur_1510	-	O-antigen polymerase
1473	 47.79	-2	2076079..2076915	-	278	163847076	-	Caur_1511	-	methyltransferase type 11
1474	 49.44	-1	2076939..2078378	-	479	163847077	-	Caur_1512	-	polysaccharide biosynthesis protein
1475	 38.01	-2	2078375..2079187	-	270	163847078	-	Caur_1513	-	methyltransferase type 11
1476	 57.62	0	2079184..2080686	-	500	163847079	-	Caur_1514	-	TPR repeat-containing protein
1477	 60.26	0	2080941..2082299	-	452	163847080	-	Caur_1515	-	cytochrome P450
1478	 57.61	0	2082495..2083874	+	459	163847081	-	Caur_1516	-	phosphomannomutase
1479	 58.51	0	2083871..2084986	+	371	163847082	-	Caur_1517	-	phosphoglucomutase/phosphomannomutase alpha/beta/subunit
1480	 57.31	0	2085009..2086184	+	391	163847083	-	Caur_1518	-	protein of unknown function UPF0052 and CofD
1481	 56.41	0	2086717..2087574	-	285	163847084	-	Caur_1519	-	alpha/beta hydrolase fold-containing protein
1482	 54.38	0	2088053..2088646	+	197	163847085	-	Caur_1520	-	hypothetical protein
1483	 54.59	0	2088636..2089223	+	195	163847086	-	Caur_1521	-	hypothetical protein
1484	 57.17	0	2089529..2090665	-	378	163847087	-	Caur_1522	-	glycosyl transferase group 1
1485	 54.79	0	2091473..2091775	+	100	163847088	-	Caur_1523	-	hypothetical protein
1486	 57.58	0	2091772..2092695	+	307	163847089	-	Caur_1524	-	cytochrome c biogenesis protein transmembrane region
1487	 56.01	0	2092703..2093143	+	146	163847090	-	Caur_1525	-	NUDIX hydrolase
1488	 52.51	-1	2093224..2094798	+	524	163847091	-	Caur_1526	-	trigger factor
1489	 55.56	0	2094809..2095474	+	221	163847092	-	Caur_1527	-	endopeptidase Clp
1490	 50.14	-1	2096892..2097629	+	245	163847093	-	Caur_1529	-	response regulator receiver
1491	 54.92	0	2097698..2098327	+	209	163847094	-	Caur_1530	-	uracil phosphoribosyltransferase
1492	 55.82	0	2098433..2099548	+	371	163847095	-	Caur_1531	-	glycosyl transferase family protein
1493	 56.76	0	2099564..2100997	-	477	163847096	-	Caur_1532	-	cyclic nucleotide-binding
1494	 60.76	+1	2101114..2102907	+	597	163847097	-	Caur_1533	-	aldehyde ferredoxin oxidoreductase
1495	 56.56	0	2102991..2104148	+	385	163847098	-	Caur_1534	-	gamma-glutamyl kinase
1496	 58.93	0	2104270..2105781	+	503	163847099	-	Caur_1535	-	glutamyl-tRNA synthetase
1497	 58.62	0	2105778..2107640	+	620	163847100	-	Caur_1536	-	alpha amylase catalytic region
1498	 52.80	-1	2107767..2108249	-	160	163847101	-	Caur_1537	-	hypothetical protein
1499	 57.02	0	2109371..2110759	+	462	163847102	-	Caur_1538	-	ferredoxin--NADP(+) reductase
1500	 59.98	0	2110759..2111910	+	383	163847103	-	Caur_1539	-	glycosyl transferase group 1
1501	 62.61	+1	2116262..2117443	-	393	163847104	-	Caur_1540	-	acetyl-CoA acetyltransferase
1502	 56.77	0	2117535..2118029	-	164	163847105	-	Caur_1541	-	hypothetical protein
1503	 56.51	0	2118336..2119172	+	278	163847106	-	Caur_1542	-	hypothetical protein
1504	 58.91	0	2120565..2124329	-	1254	163847107	-	Caur_1543	-	cell divisionFtsK/SpoIIIE
1505	 62.69	+1	2124316..2124642	-	108	163847108	-	Caur_1544	-	hypothetical protein
1506	 56.04	0	2124703..2126715	-	670	163847109	-	Caur_1545	-	hypothetical protein
1507	 59.12	0	2126719..2127513	-	264	163847110	-	Caur_1546	-	hypothetical protein
1508	 58.42	0	2127643..2127921	-	92	163847111	-	Caur_1547	-	hypothetical protein
1509	 55.58	0	2128659..2130047	+	462	163847112	-	Caur_1548	-	beta-galactosidase
1510	 59.73	0	2130044..2131297	+	417	163847113	-	Caur_1549	-	major facilitator transporter
1511	 57.68	0	2131482..2132861	-	459	163847114	-	Caur_1550	-	transcription attenuator LytR
1512	 56.26	0	2133055..2135427	+	790	163847115	-	Caur_1551	-	peptidase S9 prolyl oligopeptidase
1513	 54.11	0	2135524..2135937	+	137	163847116	-	Caur_1552	-	ApaG
1514	 54.85	0	2136998..2137234	-	78	163847117	-	Caur_1553	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1515	 57.94	0	2137316..2139079	-	587	163847118	-	Caur_1554	-	fibronectin-binding A domain-containing protein
1516	 55.08	0	2139140..2139769	+	209	163847119	-	Caur_1555	-	guanylate kinase
1517	 56.70	0	2139794..2140345	+	183	163847120	-	Caur_1556	-	GatB/YqeY domain-containing protein
1518	 54.72	0	2140353..2142545	+	730	163847121	-	Caur_1557	-	metal dependent phophohydrolase
1519	 58.93	0	2142561..2143193	+	210	163847122	-	Caur_1558	-	hypothetical protein
1520	 54.88	0	2143455..2144981	+	508	163847123	-	Caur_1559	-	PAS sensor protein
1521	 57.93	0	2144993..2146183	+	396	163847124	-	Caur_1560	-	amidohydrolase
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.