IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1391	 55.91	0	1967864..1969267	+	467	163846994	-	Caur_1421	-	peptidase M23B
1392	 54.17	0	1969267..1970130	+	287	163846995	-	Caur_1422	-	cobyrinic acid ac-diamide synthase
1393	 56.64	0	1970127..1971233	+	368	163846996	-	Caur_1423	-	parB-like partition protein
1394	 53.90	0	1971208..1972155	+	315	163846997	-	Caur_1424	-	ribokinase-like domain-containing protein
1395	 53.52	0	1972196..1972834	+	212	163846998	-	Caur_1425	-	CDP-alcohol phosphatidyltransferase
1396	 55.67	0	1972856..1973146	+	96	163846999	-	Caur_1426	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
1397	 54.88	0	1973225..1973665	+	146	163847000	-	Caur_1427	-	hypothetical protein
1398	 55.71	0	1973797..1975119	-	440	163847001	-	Caur_1428	-	asparaginyl-tRNA synthetase
1399	 54.27	0	1977715..1978884	+	389	163847002	-	Caur_1429	-	peptidase M20
1400	 57.74	0	1978907..1979959	+	350	163847003	-	Caur_1430	-	sortase family protein
1401	 56.34	0	1980490..1980954	+	154	163847004	-	Caur_1431	-	hypothetical protein
1402	 54.59	0	1981002..1981763	+	253	163847005	-	Caur_1432	-	methyltransferase type 12
1403	 58.85	0	1981796..1982230	+	144	163847006	-	Caur_1433	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
1404	 54.89	0	1982702..1983406	-	234	163847007	-	Caur_1434	-	hypothetical protein
1405	 53.18	0	1984472..1985398	-	308	163847008	-	Caur_1435	-	branched-chain amino acid aminotransferase
1406	 58.35	0	1985508..1986722	-	404	163847009	-	Caur_1436	-	major facilitator transporter
1407	 59.78	0	1986760..1987950	-	396	163847010	-	Caur_1437	-	hypothetical protein
1408	 53.65	0	1988059..1989303	+	414	163847011	-	Caur_1438	-	hypothetical protein
1409	 55.83	0	1989656..1990384	+	242	163847012	-	Caur_1439	-	beta-lactamase domain-containing protein
1410	 53.19	0	1990784..1993150	+	788	163847013	-	Caur_1440	-	RelA/SpoT family protein
1411	 54.68	0	1993147..1994097	+	316	163847014	-	Caur_1441	-	HhH-GPD family protein
1412	 56.29	0	1994216..1996606	+	796	163847015	-	Caur_1442	-	histidine kinase
1413	 59.45	0	1996888..1998342	-	484	163847016	-	Caur_1443	-	fumarate lyase
1414	 58.04	0	1998595..2000298	-	567	163847017	-	Caur_1444	-	PGAP1 family protein
1415	 56.63	0	2000631..2002841	+	736	163847018	-	Caur_1445	-	hypothetical protein
1416	 56.44	0	2003150..2006101	-	983	163847019	-	Caur_1446	-	blue (type1) copper domain-containing protein
1417	 58.97	0	2006460..2007278	+	272	163847020	-	Caur_1447	-	hypothetical protein
1418	 55.41	0	2007721..2009142	+	473	163847021	-	Caur_1448	-	glutamine synthetase, type I
1419	 59.04	0	2009630..2010796	-	388	163847022	-	Caur_1449	-	cysteine desulfurase NifS
1420	 55.30	0	2010816..2011202	-	128	163847023	-	Caur_1450	-	hypothetical protein
1421	 50.13	-1	2011452..2011844	+	130	163847024	-	Caur_1451	-	protein of unknown function DUF306 Meta and HslJ
1422	 51.16	-1	2011924..2012310	-	128	163847025	-	Caur_1452	-	hypothetical protein
1423	 57.91	0	2012307..2012603	-	98	163847026	-	Caur_1453	-	hypothetical protein
1424	 51.98	-1	2013118..2013471	+	117	163847027	-	Caur_1454	-	hypothetical protein
1425	 57.95	0	2013510..2013773	-	87	163847028	-	Caur_1455	-	hypothetical protein
1426	 57.05	0	2013792..2014592	-	266	163847029	-	Caur_1456	-	methionine aminopeptidase, type I
1427	 58.44	0	2014605..2015528	-	307	163847030	-	Caur_1457	-	methylenetetrahydrofolate reductase
1428	 57.89	0	2015532..2016728	-	398	163847031	-	Caur_1458	-	cystathionine gamma-synthase
1429	 45.99	-2	2016979..2017752	-	257	163847032	-	Caur_1459	-	methyltransferase type 11
1430	 55.74	0	2017866..2018414	-	182	163847033	-	Caur_1460	-	GCN5-related N-acetyltransferase
1431	 58.25	0	2018661..2019848	+	395	163847034	-	Caur_1461	-	acetyl-CoA acetyltransferase
1432	 53.49	0	2019937..2020680	+	247	163847035	-	Caur_1462	-	3-ketoacyl-(acyl-carrier-protein) reductase
1433	 51.52	-1	2020813..2021109	-	98	163847036	-	Caur_1463	-	hypothetical protein
1434	 58.08	0	2021180..2024383	+	1067	163847037	-	Caur_1464	-	transcriptional activator domain-containing protein
1435	 54.64	0	2024483..2024881	+	132	163847038	-	Caur_1465	-	hypothetical protein
1436	 61.72	+1	2025005..2025994	-	329	163847039	-	Caur_1466	-	urea amidolyase related protein
1437	 55.88	0	2026348..2027877	-	509	163847040	-	Caur_1467	-	polysaccharide biosynthesis protein
1438	 55.42	0	2027874..2028842	-	322	163847041	-	Caur_1468	-	glycosyl transferase family protein
1439	 52.20	-1	2029000..2029386	-	128	163847042	-	Caur_1469	-	response regulator receiver
1440	 50.79	-1	2029392..2029832	-	146	163847043	-	Caur_1470	-	RsbW protein, putative
1441	 54.93	0	2029829..2031370	-	513	163847044	-	Caur_1471	-	stage II sporulation E family protein
1442	 53.39	0	2031363..2031701	-	112	163847045	-	Caur_1472	-	anti-anti-sigma factor
1443	 56.34	0	2031759..2033462	-	567	163847046	-	Caur_1473	-	nucleotidyl transferase
1444	 57.31	0	2033467..2034984	-	505	163847047	-	Caur_1474	-	WecB/TagA/CpsF family glycosyl transferase
1445	 52.02	-1	2034999..2035742	-	247	163847048	-	Caur_1475	-	undecaprenyl-phosphate galactose phosphotransferase
1446	 54.58	0	2036461..2038065	+	534	163847049	-	Caur_1476	-	Alpha-L-arabinofuranosidase-like protein
1447	 52.85	-1	2038084..2039328	+	414	163847050	-	Caur_1477	-	hypothetical protein
1448	 52.84	-1	2039481..2040044	-	187	163847051	-	Caur_1478	-	hexapaptide repeat-containing transferase
1449	 52.26	-1	2040355..2041395	+	346	163847052	-	Caur_1479	-	lipopolysaccharide biosynthesis protein
1450	 54.53	0	2041464..2042246	+	260	163847053	-	Caur_1480	-	ATPase involved in chromosome partitioning-like protein
1451	 48.61	-2	2042249..2042392	+	47	163847054	-	Caur_1481	-	hypothetical protein
1452	 52.15	-1	2042427..2043962	+	511	163847055	-	Caur_1482	-	hypothetical protein
1453	 53.66	0	2044069..2044875	+	268	163847056	-	Caur_1483	-	hypothetical protein
1454	 69.94	+2	2048069..2049505	+	478	163847057	-	Caur_1485	-	hypothetical protein
1455	 51.17	-1	2052355..2052567	-	70	163847058	-	Caur_1488	-	hypothetical protein
1456	 65.05	+2	2056641..2057012	+	123	163847059	-	Caur_1492	-	TIS1421-transposase protein A
1457	 63.68	+1	2057012..2057446	+	144	163847060	-	Caur_1493	-	transposase IS4 family protein
1458	 61.78	+1	2057607..2058179	+	190	163847061	-	Caur_1494	-	sigma-70 family RNA polymerase sigma factor
1459	 68.65	+2	2059799..2060605	-	268	163847062	-	Caur_1496	-	transposase IS4 family protein
1460	 50.70	-1	2061025..2061237	+	70	163847063	-	Caur_1497	-	hypothetical protein
1461	 62.13	+1	2062932..2063504	+	190	163847064	-	Caur_1499	-	sigma-70 family RNA polymerase sigma factor
1462	 54.20	0	2064167..2065498	-	443	163847065	-	Caur_1500	-	lipopolysaccharide biosynthesis protein
1463	 57.20	0	2065572..2067008	-	478	163847066	-	Caur_1501	-	hypothetical protein
1464	 56.19	0	2067266..2067580	-	104	163847067	-	Caur_1502	-	hypothetical protein
1465	 56.37	0	2067632..2068000	-	122	163847068	-	Caur_1503	-	HEPN domain-containing protein
1466	 56.09	0	2068106..2069476	-	456	163847069	-	Caur_1504	-	exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
1467	 43.88	-2	2070524..2071462	-	312	163847070	-	Caur_1505	-	hypothetical protein
1468	 38.68	-2	2071532..2071774	-	80	163847071	-	Caur_1506	-	hypothetical protein
1469	 53.07	0	2071776..2072540	-	254	163847072	-	Caur_1507	-	WecB/TagA/CpsF family glycosyl transferase
1470	 41.55	-2	2072543..2073637	-	364	163847073	-	Caur_1508	-	glycosyl transferase group 1
1471	 49.83	-1	2073669..2074826	-	385	163847074	-	Caur_1509	-	glycosyl transferase group 1
1472	 47.62	-2	2074823..2076082	-	419	163847075	-	Caur_1510	-	O-antigen polymerase
1473	 47.79	-2	2076079..2076915	-	278	163847076	-	Caur_1511	-	methyltransferase type 11
1474	 49.44	-1	2076939..2078378	-	479	163847077	-	Caur_1512	-	polysaccharide biosynthesis protein
1475	 38.01	-2	2078375..2079187	-	270	163847078	-	Caur_1513	-	methyltransferase type 11
1476	 57.62	0	2079184..2080686	-	500	163847079	-	Caur_1514	-	TPR repeat-containing protein
1477	 60.26	0	2080941..2082299	-	452	163847080	-	Caur_1515	-	cytochrome P450
1478	 57.61	0	2082495..2083874	+	459	163847081	-	Caur_1516	-	phosphomannomutase
1479	 58.51	0	2083871..2084986	+	371	163847082	-	Caur_1517	-	phosphoglucomutase/phosphomannomutase alpha/beta/subunit
1480	 57.31	0	2085009..2086184	+	391	163847083	-	Caur_1518	-	protein of unknown function UPF0052 and CofD
1481	 56.41	0	2086717..2087574	-	285	163847084	-	Caur_1519	-	alpha/beta hydrolase fold-containing protein
1482	 54.38	0	2088053..2088646	+	197	163847085	-	Caur_1520	-	hypothetical protein
1483	 54.59	0	2088636..2089223	+	195	163847086	-	Caur_1521	-	hypothetical protein
1484	 57.17	0	2089529..2090665	-	378	163847087	-	Caur_1522	-	glycosyl transferase group 1
1485	 54.79	0	2091473..2091775	+	100	163847088	-	Caur_1523	-	hypothetical protein
1486	 57.58	0	2091772..2092695	+	307	163847089	-	Caur_1524	-	cytochrome c biogenesis protein transmembrane region
1487	 56.01	0	2092703..2093143	+	146	163847090	-	Caur_1525	-	NUDIX hydrolase
1488	 52.51	-1	2093224..2094798	+	524	163847091	-	Caur_1526	-	trigger factor
1489	 55.56	0	2094809..2095474	+	221	163847092	-	Caur_1527	-	endopeptidase Clp
1490	 50.14	-1	2096892..2097629	+	245	163847093	-	Caur_1529	-	response regulator receiver
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.