IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1346	 61.23	+1	1896885..1898135	+	416	163846949	-	Caur_1376	-	amine oxidase
1347	 60.81	+1	1898512..1900098	+	528	163846950	-	Caur_1377	-	amidase
1348	 59.18	0	1900176..1901966	+	596	163846951	-	Caur_1378	-	acetyl-CoA carboxylase, biotin carboxylase
1349	 63.24	+1	1902076..1902279	-	67	163846952	-	Caur_1379	-	hypothetical protein
1350	 58.30	0	1902374..1903162	-	262	163846953	-	Caur_1380	-	hypothetical protein
1351	 55.56	0	1904328..1905182	-	284	163846954	-	Caur_1381	-	photosystem I assembly BtpA
1352	 56.51	0	1905204..1906178	-	324	163846955	-	Caur_1382	-	ribokinase-like domain-containing protein
1353	 53.13	0	1906309..1908702	+	797	163846956	-	Caur_1383	-	PAS sensor protein
1354	 57.28	0	1908807..1909733	+	308	163846957	-	Caur_1384	-	initiation factor 2B related
1355	 56.48	0	1909772..1910890	-	372	163846958	-	Caur_1385	-	glycosyl transferase group 1
1356	 56.31	0	1910915..1911667	-	250	163846959	-	Caur_1386	-	beta-lactamase domain-containing protein
1357	 51.95	-1	1912027..1914282	+	751	163846960	-	Caur_1387	-	PAS sensor protein
1358	 57.47	0	1914230..1923667	+	3145	163846961	-	Caur_1388	-	Na-Ca exchanger/integrin-beta4
1359	 58.35	0	1925301..1926467	+	388	163846962	-	Caur_1389	-	peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
1360	 56.64	0	1927346..1928203	+	285	163846963	-	Caur_1390	-	indole-3-glycerol-phosphate synthase
1361	 55.05	0	1928213..1928608	+	131	163846964	-	Caur_1391	-	hypothetical protein
1362	 54.88	0	1928787..1929380	-	197	163846965	-	Caur_1392	-	ribosomal subunit interface protein
1363	 53.26	0	1929662..1930504	-	280	163846966	-	Caur_1393	-	metal-dependent hydrolase
1364	 52.59	-1	1930501..1931409	-	302	163846967	-	Caur_1394	-	beta-lactamase-like protein
1365	 55.38	0	1931562..1932314	+	250	163846968	-	Caur_1395	-	coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein
1366	 55.92	0	1932504..1934540	+	678	163846969	-	Caur_1396	-	ATPase domain-containing protein
1367	 55.40	0	1934543..1935199	+	218	163846970	-	Caur_1397	-	response regulator receiver
1368	 53.10	0	1935446..1938991	-	1181	163846971	-	Caur_1398	-	peptidase domain-containing protein
1369	 57.12	0	1939024..1943235	-	1403	163846972	-	Caur_1399	-	adenylyl cyclase class-3/4/guanylyl cyclase
1370	 56.17	0	1943542..1944513	+	323	163846973	-	Caur_1400	-	quinolinate synthetase complex, A subunit
1371	 62.55	+1	1944573..1946222	+	549	163846974	-	Caur_1401	-	L-aspartate oxidase
1372	 63.86	+1	1946230..1947228	-	332	163846975	-	Caur_1402	-	transposase IS4 family protein
1373	 51.85	-1	1948609..1948824	-	71	163846976	-	Caur_1403	-	hypothetical protein
1374	 55.05	0	1949530..1949727	-	65	163846977	-	Caur_1404	-	hypothetical protein
1375	 58.43	0	1949946..1950734	-	262	163846978	-	Caur_1405	-	cell wall anchor domain-containing protein
1376	 56.90	0	1950851..1951270	+	139	163846979	-	Caur_1406	-	hypothetical protein
1377	 59.57	0	1951945..1952508	-	187	163846980	-	Caur_1407	-	methylated-DNA--protein-cysteine methyltransferase
1378	 56.94	0	1952709..1954220	-	503	163846981	-	Caur_1408	-	anthranilate synthase component I
1379	 56.08	0	1954229..1955239	-	336	163846982	-	Caur_1409	-	tryptophanyl-tRNA synthetase
1380	 57.40	0	1955320..1957272	+	650	163846983	-	Caur_1410	-	hypothetical protein
1381	 58.81	0	1957332..1958693	-	453	163846984	-	Caur_1411	-	tryptophan synthase subunit beta
1382	 53.19	0	1959312..1959734	+	140	163846985	-	Caur_1412	-	osmotic signal transduction related protein
1383	 55.91	0	1960728..1962242	+	504	163846986	-	Caur_1413	-	phytoene desaturase
1384	 55.19	0	1962306..1962758	-	150	163846987	-	Caur_1414	-	CheW domain-containing protein
1385	 58.24	0	1962839..1963645	+	268	163846988	-	Caur_1415	-	hypothetical protein
1386	 54.56	0	1963649..1964920	+	423	163846989	-	Caur_1416	-	hypothetical protein
1387	 53.29	0	1964949..1965389	-	146	163846990	-	Caur_1417	-	isoprenylcysteine carboxyl methyltransferase
1388	 54.59	0	1965439..1966026	+	195	163846991	-	Caur_1418	-	Holliday junction DNA helicase RuvA
1389	 52.04	-1	1966129..1966764	-	211	163846992	-	Caur_1419	-	xanthine phosphoribosyltransferase
1390	 54.21	0	1967121..1967714	-	197	163846993	-	Caur_1420	-	hypothetical protein
1391	 55.91	0	1967864..1969267	+	467	163846994	-	Caur_1421	-	peptidase M23B
1392	 54.17	0	1969267..1970130	+	287	163846995	-	Caur_1422	-	cobyrinic acid ac-diamide synthase
1393	 56.64	0	1970127..1971233	+	368	163846996	-	Caur_1423	-	parB-like partition protein
1394	 53.90	0	1971208..1972155	+	315	163846997	-	Caur_1424	-	ribokinase-like domain-containing protein
1395	 53.52	0	1972196..1972834	+	212	163846998	-	Caur_1425	-	CDP-alcohol phosphatidyltransferase
1396	 55.67	0	1972856..1973146	+	96	163846999	-	Caur_1426	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
1397	 54.88	0	1973225..1973665	+	146	163847000	-	Caur_1427	-	hypothetical protein
1398	 55.71	0	1973797..1975119	-	440	163847001	-	Caur_1428	-	asparaginyl-tRNA synthetase
1399	 54.27	0	1977715..1978884	+	389	163847002	-	Caur_1429	-	peptidase M20
1400	 57.74	0	1978907..1979959	+	350	163847003	-	Caur_1430	-	sortase family protein
1401	 56.34	0	1980490..1980954	+	154	163847004	-	Caur_1431	-	hypothetical protein
1402	 54.59	0	1981002..1981763	+	253	163847005	-	Caur_1432	-	methyltransferase type 12
1403	 58.85	0	1981796..1982230	+	144	163847006	-	Caur_1433	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
1404	 54.89	0	1982702..1983406	-	234	163847007	-	Caur_1434	-	hypothetical protein
1405	 53.18	0	1984472..1985398	-	308	163847008	-	Caur_1435	-	branched-chain amino acid aminotransferase
1406	 58.35	0	1985508..1986722	-	404	163847009	-	Caur_1436	-	major facilitator transporter
1407	 59.78	0	1986760..1987950	-	396	163847010	-	Caur_1437	-	hypothetical protein
1408	 53.65	0	1988059..1989303	+	414	163847011	-	Caur_1438	-	hypothetical protein
1409	 55.83	0	1989656..1990384	+	242	163847012	-	Caur_1439	-	beta-lactamase domain-containing protein
1410	 53.19	0	1990784..1993150	+	788	163847013	-	Caur_1440	-	RelA/SpoT family protein
1411	 54.68	0	1993147..1994097	+	316	163847014	-	Caur_1441	-	HhH-GPD family protein
1412	 56.29	0	1994216..1996606	+	796	163847015	-	Caur_1442	-	histidine kinase
1413	 59.45	0	1996888..1998342	-	484	163847016	-	Caur_1443	-	fumarate lyase
1414	 58.04	0	1998595..2000298	-	567	163847017	-	Caur_1444	-	PGAP1 family protein
1415	 56.63	0	2000631..2002841	+	736	163847018	-	Caur_1445	-	hypothetical protein
1416	 56.44	0	2003150..2006101	-	983	163847019	-	Caur_1446	-	blue (type1) copper domain-containing protein
1417	 58.97	0	2006460..2007278	+	272	163847020	-	Caur_1447	-	hypothetical protein
1418	 55.41	0	2007721..2009142	+	473	163847021	-	Caur_1448	-	glutamine synthetase, type I
1419	 59.04	0	2009630..2010796	-	388	163847022	-	Caur_1449	-	cysteine desulfurase NifS
1420	 55.30	0	2010816..2011202	-	128	163847023	-	Caur_1450	-	hypothetical protein
1421	 50.13	-1	2011452..2011844	+	130	163847024	-	Caur_1451	-	protein of unknown function DUF306 Meta and HslJ
1422	 51.16	-1	2011924..2012310	-	128	163847025	-	Caur_1452	-	hypothetical protein
1423	 57.91	0	2012307..2012603	-	98	163847026	-	Caur_1453	-	hypothetical protein
1424	 51.98	-1	2013118..2013471	+	117	163847027	-	Caur_1454	-	hypothetical protein
1425	 57.95	0	2013510..2013773	-	87	163847028	-	Caur_1455	-	hypothetical protein
1426	 57.05	0	2013792..2014592	-	266	163847029	-	Caur_1456	-	methionine aminopeptidase, type I
1427	 58.44	0	2014605..2015528	-	307	163847030	-	Caur_1457	-	methylenetetrahydrofolate reductase
1428	 57.89	0	2015532..2016728	-	398	163847031	-	Caur_1458	-	cystathionine gamma-synthase
1429	 45.99	-2	2016979..2017752	-	257	163847032	-	Caur_1459	-	methyltransferase type 11
1430	 55.74	0	2017866..2018414	-	182	163847033	-	Caur_1460	-	GCN5-related N-acetyltransferase
1431	 58.25	0	2018661..2019848	+	395	163847034	-	Caur_1461	-	acetyl-CoA acetyltransferase
1432	 53.49	0	2019937..2020680	+	247	163847035	-	Caur_1462	-	3-ketoacyl-(acyl-carrier-protein) reductase
1433	 51.52	-1	2020813..2021109	-	98	163847036	-	Caur_1463	-	hypothetical protein
1434	 58.08	0	2021180..2024383	+	1067	163847037	-	Caur_1464	-	transcriptional activator domain-containing protein
1435	 54.64	0	2024483..2024881	+	132	163847038	-	Caur_1465	-	hypothetical protein
1436	 61.72	+1	2025005..2025994	-	329	163847039	-	Caur_1466	-	urea amidolyase related protein
1437	 55.88	0	2026348..2027877	-	509	163847040	-	Caur_1467	-	polysaccharide biosynthesis protein
1438	 55.42	0	2027874..2028842	-	322	163847041	-	Caur_1468	-	glycosyl transferase family protein
1439	 52.20	-1	2029000..2029386	-	128	163847042	-	Caur_1469	-	response regulator receiver
1440	 50.79	-1	2029392..2029832	-	146	163847043	-	Caur_1470	-	RsbW protein, putative
1441	 54.93	0	2029829..2031370	-	513	163847044	-	Caur_1471	-	stage II sporulation E family protein
1442	 53.39	0	2031363..2031701	-	112	163847045	-	Caur_1472	-	anti-anti-sigma factor
1443	 56.34	0	2031759..2033462	-	567	163847046	-	Caur_1473	-	nucleotidyl transferase
1444	 57.31	0	2033467..2034984	-	505	163847047	-	Caur_1474	-	WecB/TagA/CpsF family glycosyl transferase
1445	 52.02	-1	2034999..2035742	-	247	163847048	-	Caur_1475	-	undecaprenyl-phosphate galactose phosphotransferase
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.