IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1299	 46.77	-2	1837062..1837448	-	128	163846902	-	Caur_1329	-	sorbitol phosphotransferase protein II
1300	 49.63	-1	1837521..1838054	-	177	163846903	-	Caur_1330	-	protein-N(pi)-phosphohistidine--sugar phosphotransferase
1301	 49.18	-2	1838066..1838614	-	182	163846904	-	Caur_1331	-	PTS system, glucitol/sorbitol-specific, IIC subunit
1302	 46.71	-2	1838700..1839185	-	161	163846905	-	Caur_1332	-	glucitol operon activator
1303	 47.19	-2	1839187..1840572	-	461	163846906	-	Caur_1333	-	dehydrogenase catalytic domain-containing protein
1304	 45.90	-2	1840580..1841566	-	328	163846907	-	Caur_1334	-	transketolase central region
1305	 45.87	-2	1841559..1842563	-	334	163846908	-	Caur_1335	-	pyruvate dehydrogenase (acetyl-transferring)
1306	 47.29	-2	1842581..1843504	-	307	163846909	-	Caur_1336	-	sugar-binding domain-containing protein
1307	 62.21	+1	1843901..1845562	-	553	163846910	-	Caur_1337	-	FAD dependent oxidoreductase
1308	 61.35	+1	1845655..1848099	-	814	163846911	-	Caur_1338	-	hypothetical protein
1309	 60.21	0	1848096..1855580	-	2494	163846912	-	Caur_1339	-	TPR repeat-containing protein
1310	 55.56	0	1855658..1855909	-	83	163846913	-	Caur_1340	-	hypothetical protein
1311	 59.03	0	1855972..1856901	-	309	163846914	-	Caur_1341	-	cysteine synthase A
1312	 59.75	0	1857073..1857636	+	187	163846915	-	Caur_1342	-	hypothetical protein
1313	 59.79	0	1857955..1859364	-	469	163846916	-	Caur_1343	-	type I phosphodiesterase/nucleotide pyrophosphatase
1314	 55.91	0	1859361..1860206	-	281	163846917	-	Caur_1344	-	prolipoprotein diacylglyceryl transferase
1315	 57.57	0	1860212..1861750	-	512	163846918	-	Caur_1345	-	sulfatase
1316	 58.24	0	1862284..1863090	-	268	163846919	-	Caur_1346	-	enoyl-CoA hydratase/isomerase
1317	 55.64	0	1863320..1864915	+	531	163846920	-	Caur_1347	-	4-hydroxyphenylacetate 3-hydroxylase
1318	 58.00	0	1864937..1865917	+	326	163846921	-	Caur_1348	-	catechol 2,3 dioxygenase
1319	 55.89	0	1866011..1866817	+	268	163846922	-	Caur_1349	-	transcriptional regulator IclR
1320	 55.12	0	1866769..1867686	+	305	163846923	-	Caur_1350	-	acetaldehyde dehydrogenase
1321	 57.17	0	1867683..1868714	+	343	163846924	-	Caur_1351	-	4-hydroxy-2-ketovalerate aldolase
1322	 57.74	0	1868711..1869214	+	167	163846925	-	Caur_1352	-	flavin reductase domain-containing protein
1323	 57.02	0	1869298..1870137	+	279	163846926	-	Caur_1353	-	alpha/beta hydrolase fold-containing protein
1324	 58.45	0	1870150..1870368	+	72	163846927	-	Caur_1354	-	4-oxalocrotonate tautomerase
1325	 58.10	0	1870429..1871163	+	244	163846928	-	Caur_1355	-	hydratase/decarboxylase
1326	 56.65	0	1871160..1872617	+	485	163846929	-	Caur_1356	-	aldehyde dehydrogenase
1327	 56.93	0	1872599..1873420	+	273	163846930	-	Caur_1357	-	4-oxalocrotonate decarboxylase
1328	 55.86	0	1873432..1873653	+	73	163846931	-	Caur_1358	-	hypothetical protein
1329	 56.82	0	1875019..1876074	-	351	163846932	-	Caur_1359	-	recA protein
1330	 48.64	-2	1876602..1876895	+	97	163846933	-	Caur_1360	-	hypothetical protein
1331	 56.50	0	1876888..1877379	+	163	163846934	-	Caur_1361	-	hypothetical protein
1332	 57.90	0	1877488..1879107	+	539	163846935	-	Caur_1362	-	4-phytase
1333	 60.36	0	1879483..1880322	+	279	163846936	-	Caur_1363	-	binding-protein-dependent transport systems inner membrane component
1334	 59.42	0	1880322..1882337	+	671	163846937	-	Caur_1364	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
1335	 59.17	0	1882334..1883293	+	319	163846938	-	Caur_1365	-	binding-protein-dependent transport systems inner membrane component
1336	 61.86	+1	1883430..1884947	+	505	163846939	-	Caur_1366	-	Mg chelatase, subunit ChlI
1337	 50.10	-1	1885140..1885628	-	162	163846940	-	Caur_1367	-	hypothetical protein
1338	 49.29	-2	1886157..1887428	+	423	163846941	-	Caur_1368	-	polysaccharide biosynthesis protein
1339	 52.06	-1	1887425..1888684	+	419	163846942	-	Caur_1369	-	polysaccharide pyruvyl transferase
1340	 52.25	-1	1888695..1889873	+	392	163846943	-	Caur_1370	-	glycosyl transferase group 1
1341	 50.57	-1	1889884..1890318	-	144	163846944	-	Caur_1371	-	hypothetical protein
1342	 51.63	-1	1890571..1892040	+	489	163846945	-	Caur_1372	-	hypothetical protein
1343	 49.93	-1	1892116..1892856	-	246	163846946	-	Caur_1373	-	methyltransferase type 11
1344	 59.46	0	1893075..1895168	-	697	163846947	-	Caur_1374	-	NAD synthetase
1345	 59.69	0	1895414..1896874	+	486	163846948	-	Caur_1375	-	succinic semialdehyde dehydrogenase
1346	 61.23	+1	1896885..1898135	+	416	163846949	-	Caur_1376	-	amine oxidase
1347	 60.81	+1	1898512..1900098	+	528	163846950	-	Caur_1377	-	amidase
1348	 59.18	0	1900176..1901966	+	596	163846951	-	Caur_1378	-	acetyl-CoA carboxylase, biotin carboxylase
1349	 63.24	+1	1902076..1902279	-	67	163846952	-	Caur_1379	-	hypothetical protein
1350	 58.30	0	1902374..1903162	-	262	163846953	-	Caur_1380	-	hypothetical protein
1351	 55.56	0	1904328..1905182	-	284	163846954	-	Caur_1381	-	photosystem I assembly BtpA
1352	 56.51	0	1905204..1906178	-	324	163846955	-	Caur_1382	-	ribokinase-like domain-containing protein
1353	 53.13	0	1906309..1908702	+	797	163846956	-	Caur_1383	-	PAS sensor protein
1354	 57.28	0	1908807..1909733	+	308	163846957	-	Caur_1384	-	initiation factor 2B related
1355	 56.48	0	1909772..1910890	-	372	163846958	-	Caur_1385	-	glycosyl transferase group 1
1356	 56.31	0	1910915..1911667	-	250	163846959	-	Caur_1386	-	beta-lactamase domain-containing protein
1357	 51.95	-1	1912027..1914282	+	751	163846960	-	Caur_1387	-	PAS sensor protein
1358	 57.47	0	1914230..1923667	+	3145	163846961	-	Caur_1388	-	Na-Ca exchanger/integrin-beta4
1359	 58.35	0	1925301..1926467	+	388	163846962	-	Caur_1389	-	peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
1360	 56.64	0	1927346..1928203	+	285	163846963	-	Caur_1390	-	indole-3-glycerol-phosphate synthase
1361	 55.05	0	1928213..1928608	+	131	163846964	-	Caur_1391	-	hypothetical protein
1362	 54.88	0	1928787..1929380	-	197	163846965	-	Caur_1392	-	ribosomal subunit interface protein
1363	 53.26	0	1929662..1930504	-	280	163846966	-	Caur_1393	-	metal-dependent hydrolase
1364	 52.59	-1	1930501..1931409	-	302	163846967	-	Caur_1394	-	beta-lactamase-like protein
1365	 55.38	0	1931562..1932314	+	250	163846968	-	Caur_1395	-	coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein
1366	 55.92	0	1932504..1934540	+	678	163846969	-	Caur_1396	-	ATPase domain-containing protein
1367	 55.40	0	1934543..1935199	+	218	163846970	-	Caur_1397	-	response regulator receiver
1368	 53.10	0	1935446..1938991	-	1181	163846971	-	Caur_1398	-	peptidase domain-containing protein
1369	 57.12	0	1939024..1943235	-	1403	163846972	-	Caur_1399	-	adenylyl cyclase class-3/4/guanylyl cyclase
1370	 56.17	0	1943542..1944513	+	323	163846973	-	Caur_1400	-	quinolinate synthetase complex, A subunit
1371	 62.55	+1	1944573..1946222	+	549	163846974	-	Caur_1401	-	L-aspartate oxidase
1372	 63.86	+1	1946230..1947228	-	332	163846975	-	Caur_1402	-	transposase IS4 family protein
1373	 51.85	-1	1948609..1948824	-	71	163846976	-	Caur_1403	-	hypothetical protein
1374	 55.05	0	1949530..1949727	-	65	163846977	-	Caur_1404	-	hypothetical protein
1375	 58.43	0	1949946..1950734	-	262	163846978	-	Caur_1405	-	cell wall anchor domain-containing protein
1376	 56.90	0	1950851..1951270	+	139	163846979	-	Caur_1406	-	hypothetical protein
1377	 59.57	0	1951945..1952508	-	187	163846980	-	Caur_1407	-	methylated-DNA--protein-cysteine methyltransferase
1378	 56.94	0	1952709..1954220	-	503	163846981	-	Caur_1408	-	anthranilate synthase component I
1379	 56.08	0	1954229..1955239	-	336	163846982	-	Caur_1409	-	tryptophanyl-tRNA synthetase
1380	 57.40	0	1955320..1957272	+	650	163846983	-	Caur_1410	-	hypothetical protein
1381	 58.81	0	1957332..1958693	-	453	163846984	-	Caur_1411	-	tryptophan synthase subunit beta
1382	 53.19	0	1959312..1959734	+	140	163846985	-	Caur_1412	-	osmotic signal transduction related protein
1383	 55.91	0	1960728..1962242	+	504	163846986	-	Caur_1413	-	phytoene desaturase
1384	 55.19	0	1962306..1962758	-	150	163846987	-	Caur_1414	-	CheW domain-containing protein
1385	 58.24	0	1962839..1963645	+	268	163846988	-	Caur_1415	-	hypothetical protein
1386	 54.56	0	1963649..1964920	+	423	163846989	-	Caur_1416	-	hypothetical protein
1387	 53.29	0	1964949..1965389	-	146	163846990	-	Caur_1417	-	isoprenylcysteine carboxyl methyltransferase
1388	 54.59	0	1965439..1966026	+	195	163846991	-	Caur_1418	-	Holliday junction DNA helicase RuvA
1389	 52.04	-1	1966129..1966764	-	211	163846992	-	Caur_1419	-	xanthine phosphoribosyltransferase
1390	 54.21	0	1967121..1967714	-	197	163846993	-	Caur_1420	-	hypothetical protein
1391	 55.91	0	1967864..1969267	+	467	163846994	-	Caur_1421	-	peptidase M23B
1392	 54.17	0	1969267..1970130	+	287	163846995	-	Caur_1422	-	cobyrinic acid ac-diamide synthase
1393	 56.64	0	1970127..1971233	+	368	163846996	-	Caur_1423	-	parB-like partition protein
1394	 53.90	0	1971208..1972155	+	315	163846997	-	Caur_1424	-	ribokinase-like domain-containing protein
1395	 53.52	0	1972196..1972834	+	212	163846998	-	Caur_1425	-	CDP-alcohol phosphatidyltransferase
1396	 55.67	0	1972856..1973146	+	96	163846999	-	Caur_1426	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
1397	 54.88	0	1973225..1973665	+	146	163847000	-	Caur_1427	-	hypothetical protein
1398	 55.71	0	1973797..1975119	-	440	163847001	-	Caur_1428	-	asparaginyl-tRNA synthetase
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.