IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1236	 56.67	0	1764971..1765330	-	119	163846839	-	Caur_1266	-	response regulator receiver
1237	 56.53	0	1765409..1766848	-	479	163846840	-	Caur_1267	-	histidine kinase
1238	 56.89	0	1767723..1768448	-	241	163846841	-	Caur_1268	-	hypothetical protein
1239	 56.04	0	1768540..1770177	-	545	163846842	-	Caur_1269	-	von Willebrand factor type A
1240	 55.50	0	1770212..1771348	-	378	163846843	-	Caur_1270	-	hypothetical protein
1241	 55.16	0	1772080..1773000	+	306	163846844	-	Caur_1271	-	binding-protein-dependent transport systems inner membrane component
1242	 56.90	0	1773014..1773904	+	296	163846845	-	Caur_1272	-	binding-protein-dependent transport systems inner membrane component
1243	 58.80	0	1773971..1775317	+	448	163846846	-	Caur_1273	-	extracellular solute-binding protein
1244	 55.47	0	1775570..1776391	+	273	163846847	-	Caur_1274	-	hypothetical protein
1245	 57.23	0	1776982..1777776	+	264	163846848	-	Caur_1275	-	ribonuclease H
1246	 59.93	0	1777871..1778671	-	266	163846849	-	Caur_1276	-	dihydrodipicolinate reductase
1247	 56.86	0	1778699..1779208	-	169	163846850	-	Caur_1277	-	hypothetical protein
1248	 54.92	0	1779232..1779912	-	226	163846851	-	Caur_1278	-	cyclic nucleotide-binding
1249	 58.03	0	1779956..1781032	-	358	163846852	-	Caur_1279	-	leucyl aminopeptidase (aminopeptidase T)-like protein
1250	 59.15	0	1781046..1783547	-	833	163846853	-	Caur_1280	-	peptidase U32
1251	 56.29	0	1783708..1784709	-	333	163846854	-	Caur_1281	-	radical SAM domain-containing protein
1252	 50.21	-1	1784862..1785572	+	236	163846855	-	Caur_1282	-	signal peptidase I
1253	 56.05	0	1785589..1786737	+	382	163846856	-	Caur_1283	-	glycosyl transferase group 1
1254	 55.03	0	1786792..1786980	+	62	163846857	-	Caur_1284	-	twin arginine-targeting protein translocase
1255	 57.65	0	1787344..1788663	+	439	163846858	-	Caur_1285	-	GTP-binding protein Obg/CgtA
1256	 56.48	0	1788660..1790141	+	493	163846859	-	Caur_1286	-	peptidase S10 serine carboxypeptidase
1257	 59.25	0	1790145..1790966	+	273	163846860	-	Caur_1287	-	alpha/beta hydrolase fold-containing protein
1258	 57.44	0	1791029..1791982	-	317	163846861	-	Caur_1288	-	integrase domain-containing protein
1259	 53.61	0	1792979..1793836	-	285	163846862	-	Caur_1289	-	PAS sensor protein
1260	 57.26	0	1793932..1794633	-	233	163846863	-	Caur_1290	-	short-chain dehydrogenase/reductase SDR
1261	 62.04	+1	1794758..1794973	-	71	163846864	-	Caur_1291	-	hypothetical protein
1262	 56.46	0	1794982..1795314	-	110	163846865	-	Caur_1292	-	iojap-like protein
1263	 55.67	0	1795524..1796096	+	190	163846866	-	Caur_1293	-	appr-1-p processing domain-containing protein
1264	 55.68	0	1796322..1796849	+	175	163846867	-	Caur_1294	-	PspC domain-containing protein
1265	 58.15	0	1797150..1797971	-	273	163846868	-	Caur_1295	-	hypothetical protein
1266	 57.17	0	1798068..1798541	-	157	163846869	-	Caur_1296	-	cyclase/dehydrase
1267	 56.85	0	1799208..1800440	-	410	163846870	-	Caur_1297	-	Bcr/CflA subfamily drug resistance transporter
1268	 56.99	0	1800662..1801126	+	154	163846871	-	Caur_1298	-	GCN5-related N-acetyltransferase
1269	 60.64	+1	1801215..1801928	-	237	163846872	-	Caur_1299	-	hypothetical protein
1270	 57.48	0	1801901..1802923	-	340	163846873	-	Caur_1300	-	radical SAM domain-containing protein
1271	 58.28	0	1803567..1805474	-	635	163846874	-	Caur_1301	-	VanW family protein
1272	 55.36	0	1805767..1805934	-	55	163846875	-	Caur_1302	-	Flp/Fap pilin component
1273	 55.37	0	1806271..1807332	-	353	163846876	-	Caur_1303	-	histidine kinase dimerisation and phosphoacceptor region
1274	 58.83	0	1807584..1808489	+	301	163846877	-	Caur_1304	-	LysR substrate-binding
1275	 54.84	0	1808476..1810716	-	746	163846878	-	Caur_1305	-	UvrD/REP helicase
1276	 56.19	0	1811126..1813453	-	775	163846879	-	Caur_1306	-	membrane-bound proton-translocating pyrophosphatase
1277	 53.01	-1	1813684..1814562	-	292	163846880	-	Caur_1307	-	Sulfate transporter/antisigma-factor antagonist STAS
1278	 52.78	-1	1814693..1815556	-	287	163846881	-	Caur_1308	-	Sulfate transporter/antisigma-factor antagonist STAS
1279	 54.85	0	1815572..1816417	-	281	163846882	-	Caur_1309	-	Sulfate transporter/antisigma-factor antagonist STAS
1280	 55.72	0	1816448..1817890	-	480	163846883	-	Caur_1310	-	prolyl-tRNA synthetase
1281	 52.44	-1	1818094..1818339	-	81	163846884	-	Caur_1311	-	hypothetical protein
1282	 55.67	0	1818532..1819104	+	190	163846885	-	Caur_1312	-	hypothetical protein
1283	 58.90	0	1819223..1822774	+	1183	163846886	-	Caur_1313	-	alpha-1,6-glucosidase, pullulanase-type
1284	 61.71	+1	1823311..1823955	-	214	163846887	-	Caur_1314	-	allophanate hydrolase subunit 1
1285	 59.97	0	1823952..1824713	-	253	163846888	-	Caur_1315	-	LamB/YcsF family protein
1286	 60.24	0	1824721..1825824	-	367	163846889	-	Caur_1316	-	major facilitator transporter
1287	 59.25	0	1825878..1827158	-	426	163846890	-	Caur_1317	-	glycosyl transferase group 1
1288	 47.40	-2	1827572..1828282	-	236	163846891	-	Caur_1318	-	glycosyl transferase family protein
1289	 59.41	0	1828635..1829282	+	215	163846892	-	Caur_1319	-	dihydroxyacetone kinase, L subunit
1290	 57.51	0	1829279..1829671	+	130	163846893	-	Caur_1320	-	dihydroxyacetone kinase, phosphotransfer subunit
1291	 48.07	-2	1829664..1829948	+	94	163846894	-	Caur_1321	-	HPr family phosphocarrier protein
1292	 62.76	+1	1829963..1831624	+	553	163846895	-	Caur_1322	-	phosphoenolpyruvate-protein phosphotransferase
1293	 59.06	0	1831621..1831962	+	113	163846896	-	Caur_1323	-	cupin 2 domain-containing protein
1294	 59.71	0	1832057..1832818	-	253	163846897	-	Caur_1324	-	low molecular weight phosphotyrosine protein phosphatase
1295	 45.21	-2	1833081..1834823	-	580	163846898	-	Caur_1325	-	phosphoenolpyruvate-protein phosphotransferase
1296	 46.00	-2	1834858..1835157	-	99	163846899	-	Caur_1326	-	HPr family phosphocarrier protein
1297	 42.99	-2	1835160..1836464	-	434	163846900	-	Caur_1327	-	SAF domain-containing protein
1298	 44.81	-2	1836679..1837044	-	121	163846901	-	Caur_1328	-	PTS system glucitol/sorbitol-specific IIA component
1299	 46.77	-2	1837062..1837448	-	128	163846902	-	Caur_1329	-	sorbitol phosphotransferase protein II
1300	 49.63	-1	1837521..1838054	-	177	163846903	-	Caur_1330	-	protein-N(pi)-phosphohistidine--sugar phosphotransferase
1301	 49.18	-2	1838066..1838614	-	182	163846904	-	Caur_1331	-	PTS system, glucitol/sorbitol-specific, IIC subunit
1302	 46.71	-2	1838700..1839185	-	161	163846905	-	Caur_1332	-	glucitol operon activator
1303	 47.19	-2	1839187..1840572	-	461	163846906	-	Caur_1333	-	dehydrogenase catalytic domain-containing protein
1304	 45.90	-2	1840580..1841566	-	328	163846907	-	Caur_1334	-	transketolase central region
1305	 45.87	-2	1841559..1842563	-	334	163846908	-	Caur_1335	-	pyruvate dehydrogenase (acetyl-transferring)
1306	 47.29	-2	1842581..1843504	-	307	163846909	-	Caur_1336	-	sugar-binding domain-containing protein
1307	 62.21	+1	1843901..1845562	-	553	163846910	-	Caur_1337	-	FAD dependent oxidoreductase
1308	 61.35	+1	1845655..1848099	-	814	163846911	-	Caur_1338	-	hypothetical protein
1309	 60.21	0	1848096..1855580	-	2494	163846912	-	Caur_1339	-	TPR repeat-containing protein
1310	 55.56	0	1855658..1855909	-	83	163846913	-	Caur_1340	-	hypothetical protein
1311	 59.03	0	1855972..1856901	-	309	163846914	-	Caur_1341	-	cysteine synthase A
1312	 59.75	0	1857073..1857636	+	187	163846915	-	Caur_1342	-	hypothetical protein
1313	 59.79	0	1857955..1859364	-	469	163846916	-	Caur_1343	-	type I phosphodiesterase/nucleotide pyrophosphatase
1314	 55.91	0	1859361..1860206	-	281	163846917	-	Caur_1344	-	prolipoprotein diacylglyceryl transferase
1315	 57.57	0	1860212..1861750	-	512	163846918	-	Caur_1345	-	sulfatase
1316	 58.24	0	1862284..1863090	-	268	163846919	-	Caur_1346	-	enoyl-CoA hydratase/isomerase
1317	 55.64	0	1863320..1864915	+	531	163846920	-	Caur_1347	-	4-hydroxyphenylacetate 3-hydroxylase
1318	 58.00	0	1864937..1865917	+	326	163846921	-	Caur_1348	-	catechol 2,3 dioxygenase
1319	 55.89	0	1866011..1866817	+	268	163846922	-	Caur_1349	-	transcriptional regulator IclR
1320	 55.12	0	1866769..1867686	+	305	163846923	-	Caur_1350	-	acetaldehyde dehydrogenase
1321	 57.17	0	1867683..1868714	+	343	163846924	-	Caur_1351	-	4-hydroxy-2-ketovalerate aldolase
1322	 57.74	0	1868711..1869214	+	167	163846925	-	Caur_1352	-	flavin reductase domain-containing protein
1323	 57.02	0	1869298..1870137	+	279	163846926	-	Caur_1353	-	alpha/beta hydrolase fold-containing protein
1324	 58.45	0	1870150..1870368	+	72	163846927	-	Caur_1354	-	4-oxalocrotonate tautomerase
1325	 58.10	0	1870429..1871163	+	244	163846928	-	Caur_1355	-	hydratase/decarboxylase
1326	 56.65	0	1871160..1872617	+	485	163846929	-	Caur_1356	-	aldehyde dehydrogenase
1327	 56.93	0	1872599..1873420	+	273	163846930	-	Caur_1357	-	4-oxalocrotonate decarboxylase
1328	 55.86	0	1873432..1873653	+	73	163846931	-	Caur_1358	-	hypothetical protein
1329	 56.82	0	1875019..1876074	-	351	163846932	-	Caur_1359	-	recA protein
1330	 48.64	-2	1876602..1876895	+	97	163846933	-	Caur_1360	-	hypothetical protein
1331	 56.50	0	1876888..1877379	+	163	163846934	-	Caur_1361	-	hypothetical protein
1332	 57.90	0	1877488..1879107	+	539	163846935	-	Caur_1362	-	4-phytase
1333	 60.36	0	1879483..1880322	+	279	163846936	-	Caur_1363	-	binding-protein-dependent transport systems inner membrane component
1334	 59.42	0	1880322..1882337	+	671	163846937	-	Caur_1364	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
1335	 59.17	0	1882334..1883293	+	319	163846938	-	Caur_1365	-	binding-protein-dependent transport systems inner membrane component
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.