IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1184	 59.74	0	1700188..1701501	-	437	163846787	-	Caur_1213	-	SAF domain-containing protein
1185	 55.56	0	1701697..1702227	-	176	163846788	-	Caur_1214	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1186	 56.07	0	1702233..1703261	-	342	163846789	-	Caur_1215	-	NAD-dependent epimerase/dehydratase
1187	 54.95	0	1703276..1704052	-	258	163846790	-	Caur_1216	-	glucose-1-phosphate cytidylyltransferase
1188	 54.99	0	1704077..1705027	-	316	163846791	-	Caur_1217	-	NAD-dependent epimerase/dehydratase
1189	 54.04	0	1705111..1706124	-	337	163846792	-	Caur_1218	-	NAD-dependent epimerase/dehydratase
1190	 58.05	0	1706118..1707254	-	378	163846793	-	Caur_1219	-	glutamine--scyllo-inositol transaminase
1191	 60.52	+1	1708019..1708669	-	216	163846794	-	Caur_1220	-	cyclic nucleotide-binding
1192	 57.09	0	1709050..1710354	-	434	163846795	-	Caur_1221	-	glucose/sorbosone dehydrogenase-like protein
1193	 55.43	0	1710898..1712178	-	426	163846796	-	Caur_1222	-	phospholipid/glycerol acyltransferase
1194	 57.72	0	1712159..1713142	-	327	163846797	-	Caur_1223	-	NAD-dependent epimerase/dehydratase
1195	 51.56	-1	1713139..1713555	-	138	163846798	-	Caur_1224	-	death-on-curing family protein
1196	 54.63	0	1713571..1713786	-	71	163846799	-	Caur_1225	-	hypothetical protein
1197	 55.28	0	1713827..1715302	-	491	163846800	-	Caur_1226	-	lysyl-tRNA synthetase
1198	 54.01	0	1715501..1715974	-	157	163846801	-	Caur_1227	-	transcription elongation factor GreA
1199	 58.16	0	1716653..1719004	+	783	163846802	-	Caur_1228	-	cell divisionFtsK/SpoIIIE
1200	 57.78	0	1719031..1719300	+	89	163846803	-	Caur_1229	-	hypothetical protein
1201	 56.03	0	1720238..1721422	+	394	163846804	-	Caur_1230	-	peptidase M24
1202	 58.64	0	1721781..1723736	-	651	163846805	-	Caur_1231	-	hypothetical protein
1203	 55.47	0	1723902..1725392	-	496	163846806	-	Caur_1232	-	hypothetical protein
1204	 56.25	0	1725533..1727644	+	703	163846807	-	Caur_1233	-	sulphate transporter
1205	 62.08	+1	1727663..1728643	+	326	163846808	-	Caur_1234	-	fructose 1,6-bisphosphatase II
1206	 57.63	0	1729453..1730703	+	416	163846809	-	Caur_1235	-	RNA methyltransferase
1207	 52.02	-1	1731100..1731618	+	172	163846810	-	Caur_1236	-	small GTP-binding protein
1208	 57.63	0	1731615..1732322	+	235	163846811	-	Caur_1237	-	hypothetical protein
1209	 57.88	0	1732346..1733722	+	458	163846812	-	Caur_1238	-	hypothetical protein
1210	 54.77	0	1733938..1735551	+	537	163846813	-	Caur_1239	-	histidine kinase
1211	 62.70	+1	1735915..1736721	+	268	163846814	-	Caur_1240	-	transposase IS4 family protein
1212	 58.16	0	1737416..1739884	-	822	163846815	-	Caur_1241	-	DNA gyrase, A subunit
1213	 49.49	-1	1740086..1741075	+	329	163846816	-	Caur_1242	-	DNA methylase N-4/N-6 domain-containing protein
1214	 61.58	+1	1741743..1743824	+	693	163846817	-	Caur_1244	-	hypothetical protein
1215	 62.60	+1	1744394..1745671	+	425	163846818	-	Caur_1245	-	glycosyl transferase group 1
1216	 56.45	0	1745649..1746206	-	185	163846819	-	Caur_1246	-	GCN5-related N-acetyltransferase
1217	 58.77	0	1746228..1747202	-	324	163846820	-	Caur_1247	-	ribosome small subunit-dependent GTPase A
1218	 52.85	-1	1747192..1747524	-	110	163846821	-	Caur_1248	-	hypothetical protein
1219	 62.13	+1	1747789..1748781	-	330	163846822	-	Caur_1249	-	pyridoxal-5'-phosphate-dependent protein beta subunit
1220	 59.12	0	1748800..1749780	-	326	163846823	-	Caur_1250	-	aldo/keto reductase
1221	 57.52	0	1750056..1751258	+	400	163846824	-	Caur_1251	-	PUA domain-containing protein
1222	 57.31	0	1751293..1752489	+	398	163846825	-	Caur_1252	-	arginine biosynthesis bifunctional protein ArgJ
1223	 56.05	0	1752496..1753164	+	222	163846826	-	Caur_1253	-	peptidase S16 lon domain-containing protein
1224	 55.09	0	1753180..1753464	+	94	163846827	-	Caur_1254	-	hypothetical protein
1225	 59.87	0	1753550..1754593	+	347	163846828	-	Caur_1255	-	magnesium chelatase
1226	 54.00	0	1754708..1755220	-	170	163846829	-	Caur_1256	-	hypothetical protein
1227	 56.13	0	1755305..1755655	-	116	163846830	-	Caur_1257	-	hypothetical protein
1228	 57.23	0	1755860..1757131	-	423	163846831	-	Caur_1258	-	aminotransferase class V
1229	 60.90	+1	1757177..1758460	-	427	163846832	-	Caur_1259	-	polysaccharide deacetylase
1230	 47.13	-2	1758773..1759033	-	86	163846833	-	Caur_1260	-	transglycosylase-associated protein
1231	 58.27	0	1759475..1760224	-	249	163846834	-	Caur_1261	-	phosphoribosylaminoimidazolesuccinocarboxamide synthase
1232	 62.00	+1	1760236..1761264	-	342	163846835	-	Caur_1262	-	phosphoribosylaminoimidazole synthetase
1233	 58.83	0	1761267..1762274	-	335	163846836	-	Caur_1263	-	ATP phosphoribosyltransferase
1234	 61.06	+1	1762280..1762957	-	225	163846837	-	Caur_1264	-	hypothetical protein
1235	 58.56	0	1762954..1764408	-	484	163846838	-	Caur_1265	-	histidyl-tRNA synthetase
1236	 56.67	0	1764971..1765330	-	119	163846839	-	Caur_1266	-	response regulator receiver
1237	 56.53	0	1765409..1766848	-	479	163846840	-	Caur_1267	-	histidine kinase
1238	 56.89	0	1767723..1768448	-	241	163846841	-	Caur_1268	-	hypothetical protein
1239	 56.04	0	1768540..1770177	-	545	163846842	-	Caur_1269	-	von Willebrand factor type A
1240	 55.50	0	1770212..1771348	-	378	163846843	-	Caur_1270	-	hypothetical protein
1241	 55.16	0	1772080..1773000	+	306	163846844	-	Caur_1271	-	binding-protein-dependent transport systems inner membrane component
1242	 56.90	0	1773014..1773904	+	296	163846845	-	Caur_1272	-	binding-protein-dependent transport systems inner membrane component
1243	 58.80	0	1773971..1775317	+	448	163846846	-	Caur_1273	-	extracellular solute-binding protein
1244	 55.47	0	1775570..1776391	+	273	163846847	-	Caur_1274	-	hypothetical protein
1245	 57.23	0	1776982..1777776	+	264	163846848	-	Caur_1275	-	ribonuclease H
1246	 59.93	0	1777871..1778671	-	266	163846849	-	Caur_1276	-	dihydrodipicolinate reductase
1247	 56.86	0	1778699..1779208	-	169	163846850	-	Caur_1277	-	hypothetical protein
1248	 54.92	0	1779232..1779912	-	226	163846851	-	Caur_1278	-	cyclic nucleotide-binding
1249	 58.03	0	1779956..1781032	-	358	163846852	-	Caur_1279	-	leucyl aminopeptidase (aminopeptidase T)-like protein
1250	 59.15	0	1781046..1783547	-	833	163846853	-	Caur_1280	-	peptidase U32
1251	 56.29	0	1783708..1784709	-	333	163846854	-	Caur_1281	-	radical SAM domain-containing protein
1252	 50.21	-1	1784862..1785572	+	236	163846855	-	Caur_1282	-	signal peptidase I
1253	 56.05	0	1785589..1786737	+	382	163846856	-	Caur_1283	-	glycosyl transferase group 1
1254	 55.03	0	1786792..1786980	+	62	163846857	-	Caur_1284	-	twin arginine-targeting protein translocase
1255	 57.65	0	1787344..1788663	+	439	163846858	-	Caur_1285	-	GTP-binding protein Obg/CgtA
1256	 56.48	0	1788660..1790141	+	493	163846859	-	Caur_1286	-	peptidase S10 serine carboxypeptidase
1257	 59.25	0	1790145..1790966	+	273	163846860	-	Caur_1287	-	alpha/beta hydrolase fold-containing protein
1258	 57.44	0	1791029..1791982	-	317	163846861	-	Caur_1288	-	integrase domain-containing protein
1259	 53.61	0	1792979..1793836	-	285	163846862	-	Caur_1289	-	PAS sensor protein
1260	 57.26	0	1793932..1794633	-	233	163846863	-	Caur_1290	-	short-chain dehydrogenase/reductase SDR
1261	 62.04	+1	1794758..1794973	-	71	163846864	-	Caur_1291	-	hypothetical protein
1262	 56.46	0	1794982..1795314	-	110	163846865	-	Caur_1292	-	iojap-like protein
1263	 55.67	0	1795524..1796096	+	190	163846866	-	Caur_1293	-	appr-1-p processing domain-containing protein
1264	 55.68	0	1796322..1796849	+	175	163846867	-	Caur_1294	-	PspC domain-containing protein
1265	 58.15	0	1797150..1797971	-	273	163846868	-	Caur_1295	-	hypothetical protein
1266	 57.17	0	1798068..1798541	-	157	163846869	-	Caur_1296	-	cyclase/dehydrase
1267	 56.85	0	1799208..1800440	-	410	163846870	-	Caur_1297	-	Bcr/CflA subfamily drug resistance transporter
1268	 56.99	0	1800662..1801126	+	154	163846871	-	Caur_1298	-	GCN5-related N-acetyltransferase
1269	 60.64	+1	1801215..1801928	-	237	163846872	-	Caur_1299	-	hypothetical protein
1270	 57.48	0	1801901..1802923	-	340	163846873	-	Caur_1300	-	radical SAM domain-containing protein
1271	 58.28	0	1803567..1805474	-	635	163846874	-	Caur_1301	-	VanW family protein
1272	 55.36	0	1805767..1805934	-	55	163846875	-	Caur_1302	-	Flp/Fap pilin component
1273	 55.37	0	1806271..1807332	-	353	163846876	-	Caur_1303	-	histidine kinase dimerisation and phosphoacceptor region
1274	 58.83	0	1807584..1808489	+	301	163846877	-	Caur_1304	-	LysR substrate-binding
1275	 54.84	0	1808476..1810716	-	746	163846878	-	Caur_1305	-	UvrD/REP helicase
1276	 56.19	0	1811126..1813453	-	775	163846879	-	Caur_1306	-	membrane-bound proton-translocating pyrophosphatase
1277	 53.01	-1	1813684..1814562	-	292	163846880	-	Caur_1307	-	Sulfate transporter/antisigma-factor antagonist STAS
1278	 52.78	-1	1814693..1815556	-	287	163846881	-	Caur_1308	-	Sulfate transporter/antisigma-factor antagonist STAS
1279	 54.85	0	1815572..1816417	-	281	163846882	-	Caur_1309	-	Sulfate transporter/antisigma-factor antagonist STAS
1280	 55.72	0	1816448..1817890	-	480	163846883	-	Caur_1310	-	prolyl-tRNA synthetase
1281	 52.44	-1	1818094..1818339	-	81	163846884	-	Caur_1311	-	hypothetical protein
1282	 55.67	0	1818532..1819104	+	190	163846885	-	Caur_1312	-	hypothetical protein
1283	 58.90	0	1819223..1822774	+	1183	163846886	-	Caur_1313	-	alpha-1,6-glucosidase, pullulanase-type
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.