IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1126	 50.64	-1	1608182..1609435	-	417	163846729	-	Caur_1154	-	binding-protein-dependent transport systems inner membrane component
1127	 49.45	-1	1609450..1610454	-	334	163846730	-	Caur_1155	-	binding-protein-dependent transport systems inner membrane component
1128	 54.40	0	1610647..1612545	-	632	163846731	-	Caur_1156	-	extracellular solute-binding protein
1129	 50.86	-1	1612670..1613719	-	349	163846732	-	Caur_1157	-	periplasmic binding protein/LacI transcriptional regulator
1130	 56.60	0	1616516..1617280	+	254	163846733	-	Caur_1158	-	hypothetical protein
1131	 56.08	0	1617561..1619600	+	679	163846734	-	Caur_1159	-	alpha amylase catalytic region
1132	 56.32	0	1619624..1622986	+	1120	163846735	-	Caur_1160	-	trehalose synthase
1133	 56.34	0	1623046..1625079	+	677	163846736	-	Caur_1161	-	glycogen branching enzyme
1134	 58.25	0	1625296..1627125	+	609	163846737	-	Caur_1162	-	malto-oligosyltrehalose trehalohydrolase
1135	 56.58	0	1627156..1629594	+	812	163846738	-	Caur_1163	-	glycoside hydrolase family protein
1136	 58.38	0	1629591..1632548	+	985	163846739	-	Caur_1164	-	malto-oligosyltrehalose synthase
1137	 52.21	-1	1632875..1633123	-	82	163846740	-	Caur_1165	-	hypothetical protein
1138	 57.39	0	1633392..1634792	-	466	163846741	-	Caur_1166	-	adenylosuccinate lyase
1139	 53.94	0	1635029..1635523	+	164	163846742	-	Caur_1167	-	regulatory protein MarR
1140	 59.58	0	1636006..1637826	+	606	163846743	-	Caur_1168	-	RND family efflux transporter MFP subunit
1141	 55.61	0	1637847..1639094	+	415	163846744	-	Caur_1169	-	hypothetical protein
1142	 53.54	0	1639343..1640287	+	314	163846745	-	Caur_1170	-	NAD-dependent epimerase/dehydratase
1143	 56.75	0	1640284..1642512	+	742	163846746	-	Caur_1171	-	PAS sensor protein
1144	 58.31	0	1642514..1643614	+	366	163846747	-	Caur_1172	-	histidinol-phosphate aminotransferase
1145	 56.84	0	1643632..1645137	+	501	163846748	-	Caur_1173	-	hypothetical protein
1146	 58.15	0	1646786..1648006	-	406	163846749	-	Caur_1174	-	hypothetical protein
1147	 54.83	0	1648274..1649515	+	413	163846750	-	Caur_1175	-	hypothetical protein
1148	 56.01	0	1649663..1650328	-	221	163846751	-	Caur_1176	-	superoxide dismutase
1149	 59.24	0	1650371..1651003	-	210	163846752	-	Caur_1177	-	regulatory protein ArsR
1150	 59.36	0	1651239..1652333	+	364	163846753	-	Caur_1178	-	hypothetical protein
1151	 61.39	+1	1652427..1653488	+	353	163846754	-	Caur_1179	-	molybdenum cofactor biosynthesis protein A
1152	 57.29	0	1653633..1655531	+	632	163846755	-	Caur_1180	-	heat shock protein 90
1153	 57.47	0	1655658..1657016	-	452	163846756	-	Caur_1181	-	major facilitator transporter
1154	 50.00	-1	1657181..1657732	+	183	163846757	-	Caur_1182	-	colicin V production protein
1155	 59.30	0	1657799..1660270	+	823	163846758	-	Caur_1183	-	MutS2 family protein
1156	 57.28	0	1662114..1662635	+	173	163846759	-	Caur_1184	-	NADH dehydrogenase (ubiquinone) 24 kDa subunit
1157	 56.03	0	1662639..1664246	+	535	163846760	-	Caur_1185	-	NADH dehydrogenase (quinone)
1158	 57.49	0	1664236..1664943	+	235	163846761	-	Caur_1186	-	bidirectional hydrogenase complex protein HoxU
1159	 54.87	0	1664985..1665518	+	177	163846762	-	Caur_1187	-	NADH ubiquinone oxidoreductase 20 kDa subunit
1160	 56.75	0	1665551..1666972	+	473	163846763	-	Caur_1188	-	nickel-dependent hydrogenase large subunit
1161	 59.24	0	1667226..1667723	+	165	163846764	-	Caur_1189	-	hydrogenase maturation protease
1162	 58.24	0	1668269..1668826	-	185	163846765	-	Caur_1190	-	CDP-alcohol phosphatidyltransferase
1163	 51.70	-1	1668839..1669513	-	224	163846766	-	Caur_1191	-	hypothetical protein
1164	 59.75	0	1670485..1671207	-	240	163846767	-	Caur_1192	-	hypothetical protein
1165	 60.61	+1	1671207..1672394	-	395	163846768	-	Caur_1193	-	competence/damage-inducible protein CinA
1166	 62.86	+1	1672764..1673183	-	139	163846769	-	Caur_1194	-	hypothetical protein
1167	 57.87	0	1673195..1674979	-	594	163846770	-	Caur_1195	-	threonyl-tRNA synthetase
1168	 58.33	0	1674998..1675585	-	195	163846771	-	Caur_1196	-	hypothetical protein
1169	 62.52	+1	1675914..1677047	-	377	163846772	-	Caur_1197	-	cobalt transport protein
1170	 63.25	+1	1677047..1677808	-	253	163846773	-	Caur_1198	-	cobalamin 5'-phosphate synthase
1171	 63.57	+1	1677805..1678449	-	214	163846774	-	Caur_1199	-	phosphoglycerate mutase
1172	 62.91	+1	1678475..1679299	-	274	163846775	-	Caur_1200	-	hypothetical protein
1173	 62.59	+1	1679310..1680365	-	351	163846776	-	Caur_1201	-	cell wall anchor domain-containing protein
1174	 61.11	+1	1681719..1682168	-	149	163846777	-	Caur_1203	-	resolvase-like protein
1175	 60.67	+1	1682265..1683314	-	349	163846778	-	Caur_1204	-	acetyl-lysine deacetylase
1176	 53.86	0	1683540..1683953	+	137	163846779	-	Caur_1205	-	ATPase domain-containing protein
1177	 57.14	0	1683966..1684469	+	167	163846780	-	Caur_1206	-	hypothetical protein
1178	 58.45	0	1684453..1688685	+	1410	163846781	-	Caur_1207	-	superfamily I DNA/RNA helicase
1179	 56.14	0	1688664..1689974	-	436	163846782	-	Caur_1208	-	ATPase domain-containing protein
1180	 55.44	0	1691207..1693717	-	836	163846783	-	Caur_1209	-	arsenite oxidase, large subunit
1181	 57.80	0	1693729..1694382	-	217	163846784	-	Caur_1210	-	arsenite oxidase, small subunit
1182	 56.29	0	1695532..1696167	-	211	163846785	-	Caur_1211	-	response regulator receiver
1183	 57.07	0	1697262..1699982	+	906	163846786	-	Caur_1212	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
1184	 59.74	0	1700188..1701501	-	437	163846787	-	Caur_1213	-	SAF domain-containing protein
1185	 55.56	0	1701697..1702227	-	176	163846788	-	Caur_1214	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1186	 56.07	0	1702233..1703261	-	342	163846789	-	Caur_1215	-	NAD-dependent epimerase/dehydratase
1187	 54.95	0	1703276..1704052	-	258	163846790	-	Caur_1216	-	glucose-1-phosphate cytidylyltransferase
1188	 54.99	0	1704077..1705027	-	316	163846791	-	Caur_1217	-	NAD-dependent epimerase/dehydratase
1189	 54.04	0	1705111..1706124	-	337	163846792	-	Caur_1218	-	NAD-dependent epimerase/dehydratase
1190	 58.05	0	1706118..1707254	-	378	163846793	-	Caur_1219	-	glutamine--scyllo-inositol transaminase
1191	 60.52	+1	1708019..1708669	-	216	163846794	-	Caur_1220	-	cyclic nucleotide-binding
1192	 57.09	0	1709050..1710354	-	434	163846795	-	Caur_1221	-	glucose/sorbosone dehydrogenase-like protein
1193	 55.43	0	1710898..1712178	-	426	163846796	-	Caur_1222	-	phospholipid/glycerol acyltransferase
1194	 57.72	0	1712159..1713142	-	327	163846797	-	Caur_1223	-	NAD-dependent epimerase/dehydratase
1195	 51.56	-1	1713139..1713555	-	138	163846798	-	Caur_1224	-	death-on-curing family protein
1196	 54.63	0	1713571..1713786	-	71	163846799	-	Caur_1225	-	hypothetical protein
1197	 55.28	0	1713827..1715302	-	491	163846800	-	Caur_1226	-	lysyl-tRNA synthetase
1198	 54.01	0	1715501..1715974	-	157	163846801	-	Caur_1227	-	transcription elongation factor GreA
1199	 58.16	0	1716653..1719004	+	783	163846802	-	Caur_1228	-	cell divisionFtsK/SpoIIIE
1200	 57.78	0	1719031..1719300	+	89	163846803	-	Caur_1229	-	hypothetical protein
1201	 56.03	0	1720238..1721422	+	394	163846804	-	Caur_1230	-	peptidase M24
1202	 58.64	0	1721781..1723736	-	651	163846805	-	Caur_1231	-	hypothetical protein
1203	 55.47	0	1723902..1725392	-	496	163846806	-	Caur_1232	-	hypothetical protein
1204	 56.25	0	1725533..1727644	+	703	163846807	-	Caur_1233	-	sulphate transporter
1205	 62.08	+1	1727663..1728643	+	326	163846808	-	Caur_1234	-	fructose 1,6-bisphosphatase II
1206	 57.63	0	1729453..1730703	+	416	163846809	-	Caur_1235	-	RNA methyltransferase
1207	 52.02	-1	1731100..1731618	+	172	163846810	-	Caur_1236	-	small GTP-binding protein
1208	 57.63	0	1731615..1732322	+	235	163846811	-	Caur_1237	-	hypothetical protein
1209	 57.88	0	1732346..1733722	+	458	163846812	-	Caur_1238	-	hypothetical protein
1210	 54.77	0	1733938..1735551	+	537	163846813	-	Caur_1239	-	histidine kinase
1211	 62.70	+1	1735915..1736721	+	268	163846814	-	Caur_1240	-	transposase IS4 family protein
1212	 58.16	0	1737416..1739884	-	822	163846815	-	Caur_1241	-	DNA gyrase, A subunit
1213	 49.49	-1	1740086..1741075	+	329	163846816	-	Caur_1242	-	DNA methylase N-4/N-6 domain-containing protein
1214	 61.58	+1	1741743..1743824	+	693	163846817	-	Caur_1244	-	hypothetical protein
1215	 62.60	+1	1744394..1745671	+	425	163846818	-	Caur_1245	-	glycosyl transferase group 1
1216	 56.45	0	1745649..1746206	-	185	163846819	-	Caur_1246	-	GCN5-related N-acetyltransferase
1217	 58.77	0	1746228..1747202	-	324	163846820	-	Caur_1247	-	ribosome small subunit-dependent GTPase A
1218	 52.85	-1	1747192..1747524	-	110	163846821	-	Caur_1248	-	hypothetical protein
1219	 62.13	+1	1747789..1748781	-	330	163846822	-	Caur_1249	-	pyridoxal-5'-phosphate-dependent protein beta subunit
1220	 59.12	0	1748800..1749780	-	326	163846823	-	Caur_1250	-	aldo/keto reductase
1221	 57.52	0	1750056..1751258	+	400	163846824	-	Caur_1251	-	PUA domain-containing protein
1222	 57.31	0	1751293..1752489	+	398	163846825	-	Caur_1252	-	arginine biosynthesis bifunctional protein ArgJ
1223	 56.05	0	1752496..1753164	+	222	163846826	-	Caur_1253	-	peptidase S16 lon domain-containing protein
1224	 55.09	0	1753180..1753464	+	94	163846827	-	Caur_1254	-	hypothetical protein
1225	 59.87	0	1753550..1754593	+	347	163846828	-	Caur_1255	-	magnesium chelatase
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.