IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1095	 52.53	-1	1564398..1565069	-	223	163846698	-	Caur_1123	-	Zn-dependent hydrolase of the beta-lactamase fold-like protein
1096	 56.19	0	1565300..1565977	-	225	163846699	-	Caur_1124	-	regulatory protein RecX
1097	 58.80	0	1566474..1567376	-	300	163846700	-	Caur_1125	-	beta-lactamase domain-containing protein
1098	 55.93	0	1567484..1568731	-	415	163846701	-	Caur_1126	-	PSP1 domain-containing protein
1099	 55.30	0	1568781..1570337	-	518	163846702	-	Caur_1127	-	adenylyl cyclase class-3/4/guanylyl cyclase
1100	 52.70	-1	1570678..1571400	-	240	163846703	-	Caur_1128	-	iron dependent repressor
1101	 53.42	0	1571554..1571787	+	77	163846704	-	Caur_1129	-	hypothetical protein
1102	 56.57	0	1571926..1572678	+	250	163846705	-	Caur_1130	-	hypothetical protein
1103	 58.14	0	1573159..1574835	-	558	163846706	-	Caur_1131	-	peptidase M14 carboxypeptidase A
1104	 58.90	0	1574957..1575922	+	321	163846707	-	Caur_1132	-	protein phosphatase 2C-like protein
1105	 58.93	0	1576170..1578044	+	624	163846708	-	Caur_1133	-	DNA mismatch repair protein MutL
1106	 57.09	0	1578966..1580678	-	570	163846709	-	Caur_1134	-	single-stranded-DNA-specific exonuclease RecJ
1107	 51.09	-1	1580851..1581903	+	350	163846710	-	Caur_1135	-	extracellular solute-binding protein
1108	 48.69	-2	1581900..1582622	+	240	163846711	-	Caur_1136	-	hypothetical protein
1109	 52.17	-1	1582764..1584998	+	744	163846712	-	Caur_1137	-	response regulator receiver
1110	 56.80	0	1587055..1588503	-	482	163846713	-	Caur_1138	-	tetratricopeptide TPR_4
1111	 48.48	-2	1588500..1588697	-	65	163846714	-	Caur_1139	-	hypothetical protein
1112	 55.35	0	1588797..1589759	-	320	163846715	-	Caur_1140	-	diguanylate cyclase
1113	 55.54	0	1591122..1593215	-	697	163846716	-	Caur_1141	-	hypothetical protein
1114	 58.41	0	1594647..1596269	-	540	163846717	-	Caur_1142	-	phosphoglyceromutase
1115	 58.63	0	1596282..1596530	-	82	163846718	-	Caur_1143	-	hypothetical protein
1116	 60.94	+1	1596565..1597752	-	395	163846719	-	Caur_1144	-	FAD linked oxidase domain-containing protein
1117	 60.54	+1	1597759..1599210	-	483	163846720	-	Caur_1145	-	FAD linked oxidase domain-containing protein
1118	 55.56	0	1599207..1599557	-	116	163846721	-	Caur_1146	-	hypothetical protein
1119	 52.04	-1	1600243..1601001	+	252	163846722	-	Caur_1147	-	glycosyl transferase family protein
1120	 55.86	0	1600998..1601654	-	218	163846723	-	Caur_1148	-	cyclic nucleotide-binding
1121	 57.68	0	1601656..1603479	+	607	163846724	-	Caur_1149	-	extracellular solute-binding protein
1122	 61.25	+1	1603510..1604562	+	350	163846725	-	Caur_1150	-	AAA ATPase
1123	 54.95	0	1604604..1605482	-	292	163846726	-	Caur_1151	-	DNA adenine methylase
1124	 48.59	-2	1606361..1607173	-	270	163846727	-	Caur_1152	-	ABC transporter related
1125	 52.88	-1	1607139..1608161	-	340	163846728	-	Caur_1153	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
1126	 50.64	-1	1608182..1609435	-	417	163846729	-	Caur_1154	-	binding-protein-dependent transport systems inner membrane component
1127	 49.45	-1	1609450..1610454	-	334	163846730	-	Caur_1155	-	binding-protein-dependent transport systems inner membrane component
1128	 54.40	0	1610647..1612545	-	632	163846731	-	Caur_1156	-	extracellular solute-binding protein
1129	 50.86	-1	1612670..1613719	-	349	163846732	-	Caur_1157	-	periplasmic binding protein/LacI transcriptional regulator
1130	 56.60	0	1616516..1617280	+	254	163846733	-	Caur_1158	-	hypothetical protein
1131	 56.08	0	1617561..1619600	+	679	163846734	-	Caur_1159	-	alpha amylase catalytic region
1132	 56.32	0	1619624..1622986	+	1120	163846735	-	Caur_1160	-	trehalose synthase
1133	 56.34	0	1623046..1625079	+	677	163846736	-	Caur_1161	-	glycogen branching enzyme
1134	 58.25	0	1625296..1627125	+	609	163846737	-	Caur_1162	-	malto-oligosyltrehalose trehalohydrolase
1135	 56.58	0	1627156..1629594	+	812	163846738	-	Caur_1163	-	glycoside hydrolase family protein
1136	 58.38	0	1629591..1632548	+	985	163846739	-	Caur_1164	-	malto-oligosyltrehalose synthase
1137	 52.21	-1	1632875..1633123	-	82	163846740	-	Caur_1165	-	hypothetical protein
1138	 57.39	0	1633392..1634792	-	466	163846741	-	Caur_1166	-	adenylosuccinate lyase
1139	 53.94	0	1635029..1635523	+	164	163846742	-	Caur_1167	-	regulatory protein MarR
1140	 59.58	0	1636006..1637826	+	606	163846743	-	Caur_1168	-	RND family efflux transporter MFP subunit
1141	 55.61	0	1637847..1639094	+	415	163846744	-	Caur_1169	-	hypothetical protein
1142	 53.54	0	1639343..1640287	+	314	163846745	-	Caur_1170	-	NAD-dependent epimerase/dehydratase
1143	 56.75	0	1640284..1642512	+	742	163846746	-	Caur_1171	-	PAS sensor protein
1144	 58.31	0	1642514..1643614	+	366	163846747	-	Caur_1172	-	histidinol-phosphate aminotransferase
1145	 56.84	0	1643632..1645137	+	501	163846748	-	Caur_1173	-	hypothetical protein
1146	 58.15	0	1646786..1648006	-	406	163846749	-	Caur_1174	-	hypothetical protein
1147	 54.83	0	1648274..1649515	+	413	163846750	-	Caur_1175	-	hypothetical protein
1148	 56.01	0	1649663..1650328	-	221	163846751	-	Caur_1176	-	superoxide dismutase
1149	 59.24	0	1650371..1651003	-	210	163846752	-	Caur_1177	-	regulatory protein ArsR
1150	 59.36	0	1651239..1652333	+	364	163846753	-	Caur_1178	-	hypothetical protein
1151	 61.39	+1	1652427..1653488	+	353	163846754	-	Caur_1179	-	molybdenum cofactor biosynthesis protein A
1152	 57.29	0	1653633..1655531	+	632	163846755	-	Caur_1180	-	heat shock protein 90
1153	 57.47	0	1655658..1657016	-	452	163846756	-	Caur_1181	-	major facilitator transporter
1154	 50.00	-1	1657181..1657732	+	183	163846757	-	Caur_1182	-	colicin V production protein
1155	 59.30	0	1657799..1660270	+	823	163846758	-	Caur_1183	-	MutS2 family protein
1156	 57.28	0	1662114..1662635	+	173	163846759	-	Caur_1184	-	NADH dehydrogenase (ubiquinone) 24 kDa subunit
1157	 56.03	0	1662639..1664246	+	535	163846760	-	Caur_1185	-	NADH dehydrogenase (quinone)
1158	 57.49	0	1664236..1664943	+	235	163846761	-	Caur_1186	-	bidirectional hydrogenase complex protein HoxU
1159	 54.87	0	1664985..1665518	+	177	163846762	-	Caur_1187	-	NADH ubiquinone oxidoreductase 20 kDa subunit
1160	 56.75	0	1665551..1666972	+	473	163846763	-	Caur_1188	-	nickel-dependent hydrogenase large subunit
1161	 59.24	0	1667226..1667723	+	165	163846764	-	Caur_1189	-	hydrogenase maturation protease
1162	 58.24	0	1668269..1668826	-	185	163846765	-	Caur_1190	-	CDP-alcohol phosphatidyltransferase
1163	 51.70	-1	1668839..1669513	-	224	163846766	-	Caur_1191	-	hypothetical protein
1164	 59.75	0	1670485..1671207	-	240	163846767	-	Caur_1192	-	hypothetical protein
1165	 60.61	+1	1671207..1672394	-	395	163846768	-	Caur_1193	-	competence/damage-inducible protein CinA
1166	 62.86	+1	1672764..1673183	-	139	163846769	-	Caur_1194	-	hypothetical protein
1167	 57.87	0	1673195..1674979	-	594	163846770	-	Caur_1195	-	threonyl-tRNA synthetase
1168	 58.33	0	1674998..1675585	-	195	163846771	-	Caur_1196	-	hypothetical protein
1169	 62.52	+1	1675914..1677047	-	377	163846772	-	Caur_1197	-	cobalt transport protein
1170	 63.25	+1	1677047..1677808	-	253	163846773	-	Caur_1198	-	cobalamin 5'-phosphate synthase
1171	 63.57	+1	1677805..1678449	-	214	163846774	-	Caur_1199	-	phosphoglycerate mutase
1172	 62.91	+1	1678475..1679299	-	274	163846775	-	Caur_1200	-	hypothetical protein
1173	 62.59	+1	1679310..1680365	-	351	163846776	-	Caur_1201	-	cell wall anchor domain-containing protein
1174	 61.11	+1	1681719..1682168	-	149	163846777	-	Caur_1203	-	resolvase-like protein
1175	 60.67	+1	1682265..1683314	-	349	163846778	-	Caur_1204	-	acetyl-lysine deacetylase
1176	 53.86	0	1683540..1683953	+	137	163846779	-	Caur_1205	-	ATPase domain-containing protein
1177	 57.14	0	1683966..1684469	+	167	163846780	-	Caur_1206	-	hypothetical protein
1178	 58.45	0	1684453..1688685	+	1410	163846781	-	Caur_1207	-	superfamily I DNA/RNA helicase
1179	 56.14	0	1688664..1689974	-	436	163846782	-	Caur_1208	-	ATPase domain-containing protein
1180	 55.44	0	1691207..1693717	-	836	163846783	-	Caur_1209	-	arsenite oxidase, large subunit
1181	 57.80	0	1693729..1694382	-	217	163846784	-	Caur_1210	-	arsenite oxidase, small subunit
1182	 56.29	0	1695532..1696167	-	211	163846785	-	Caur_1211	-	response regulator receiver
1183	 57.07	0	1697262..1699982	+	906	163846786	-	Caur_1212	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
1184	 59.74	0	1700188..1701501	-	437	163846787	-	Caur_1213	-	SAF domain-containing protein
1185	 55.56	0	1701697..1702227	-	176	163846788	-	Caur_1214	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1186	 56.07	0	1702233..1703261	-	342	163846789	-	Caur_1215	-	NAD-dependent epimerase/dehydratase
1187	 54.95	0	1703276..1704052	-	258	163846790	-	Caur_1216	-	glucose-1-phosphate cytidylyltransferase
1188	 54.99	0	1704077..1705027	-	316	163846791	-	Caur_1217	-	NAD-dependent epimerase/dehydratase
1189	 54.04	0	1705111..1706124	-	337	163846792	-	Caur_1218	-	NAD-dependent epimerase/dehydratase
1190	 58.05	0	1706118..1707254	-	378	163846793	-	Caur_1219	-	glutamine--scyllo-inositol transaminase
1191	 60.52	+1	1708019..1708669	-	216	163846794	-	Caur_1220	-	cyclic nucleotide-binding
1192	 57.09	0	1709050..1710354	-	434	163846795	-	Caur_1221	-	glucose/sorbosone dehydrogenase-like protein
1193	 55.43	0	1710898..1712178	-	426	163846796	-	Caur_1222	-	phospholipid/glycerol acyltransferase
1194	 57.72	0	1712159..1713142	-	327	163846797	-	Caur_1223	-	NAD-dependent epimerase/dehydratase
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.