IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
57	 52.32	-1	72070..73017	+	315	163845660	-	Caur_0061	-	ATPase
58	 58.31	0	73019..75568	+	849	163845661	-	Caur_0062	-	hypothetical protein
59	 59.18	0	75650..75916	+	88	163845662	-	Caur_0063	-	acyl-CoA-binding protein
60	 55.09	0	76425..76709	-	94	163845663	-	Caur_0064	-	RNP-1 like RNA-binding protein
61	 59.32	0	77165..77749	+	194	163845664	-	Caur_0065	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
62	 54.47	0	77807..78511	-	234	163845665	-	Caur_0066	-	hypothetical protein
63	 54.55	0	78514..79503	-	329	163845666	-	Caur_0067	-	CRISPR-associated autoregulator DevR family protein
64	 54.04	0	79534..81093	-	519	163845667	-	Caur_0068	-	hypothetical protein
65	 47.08	-2	81155..81394	-	79	163845668	-	Caur_0069	-	hypothetical protein
66	 56.48	0	81409..83814	-	801	163845669	-	Caur_0070	-	CRISPR-associated helicase Cas3
67	 55.59	0	83818..84846	-	342	163845670	-	Caur_0071	-	regulatory protein, DeoR
68	 52.54	-1	85231..86709	+	492	163845671	-	Caur_0072	-	sigma-70 family RNA polymerase sigma factor
69	 58.49	0	86711..89500	+	929	163845672	-	Caur_0073	-	tetratricopeptide TPR_4
70	 58.12	0	89548..91068	+	506	163845673	-	Caur_0074	-	polysaccharide biosynthesis protein
71	 48.33	-2	91216..92115	+	299	163845674	-	Caur_0075	-	D12 class N6 adenine-specific DNA methyltransferase
72	 42.64	-2	92099..93226	+	375	163845675	-	Caur_0076	-	hypothetical protein
73	 55.23	0	93459..94595	+	378	163845676	-	Caur_0077	-	glycosyl transferase group 1
74	 46.77	-2	96498..96884	+	128	163845677	-	Caur_0078	-	hypothetical protein
75	 55.10	0	96990..97862	+	290	163845678	-	Caur_0079	-	glycosyl transferase family protein
76	 57.47	0	98452..103038	-	1528	163845679	-	Caur_0080	-	hypothetical protein
77	 55.67	0	103793..104938	+	381	163845680	-	Caur_0081	-	hypothetical protein
78	 60.00	0	105220..106434	-	404	163845681	-	Caur_0082	-	citrate transporter
79	 58.10	0	106505..107578	-	357	163845682	-	Caur_0083	-	phosphotransferase domain-containing protein
80	 60.81	+1	107630..108739	+	369	163845683	-	Caur_0084	-	glycosyl transferase group 1
81	 58.20	0	109679..110044	+	121	163845684	-	Caur_0085	-	hypothetical protein
82	 58.17	0	110797..113220	-	807	163845685	-	Caur_0086	-	ATP-dependent protease La
83	 61.41	+1	113440..114276	+	278	163845686	-	Caur_0087	-	alpha/beta hydrolase fold-containing protein
84	 45.94	-2	114596..115063	-	155	163845687	-	Caur_0088	-	hypothetical protein
85	 54.12	0	115078..115332	-	84	163845688	-	Caur_0089	-	hypothetical protein
86	 52.46	-1	115639..116187	-	182	163845689	-	Caur_0090	-	HEAT repeat-containing PBS lyase
87	 60.60	+1	116225..119440	-	1071	163845690	-	Caur_0091	-	HEAT repeat-containing PBS lyase
88	 56.75	0	119415..119777	-	120	163845691	-	Caur_0092	-	HEAT repeat-containing PBS lyase
89	 50.43	-1	121577..122044	-	155	163845692	-	Caur_0093	-	hypothetical protein
90	 59.66	0	122914..123741	+	275	163845693	-	Caur_0094	-	naphthoate synthase
91	 61.70	+1	124211..125116	+	301	163845694	-	Caur_0095	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
92	 62.50	+1	125639..127102	+	487	163845695	-	Caur_0096	-	O-succinylbenzoate-CoA ligase
93	 57.75	0	131222..131860	-	212	163845696	-	Caur_0097	-	hypothetical protein
94	 54.63	0	131916..132455	-	179	163845697	-	Caur_0098	-	hexapaptide repeat-containing transferase
95	 58.33	0	132456..133331	+	291	163845698	-	Caur_0099	-	transcriptional regulator IclR
96	 59.83	0	134516..135217	-	233	163845699	-	Caur_0100	-	FeoA family protein
97	 58.17	0	135421..136197	+	258	163845700	-	Caur_0101	-	enoyl-CoA hydratase/isomerase
98	 53.24	0	136350..138815	+	821	163845701	-	Caur_0102	-	PAS sensor protein
99	 59.94	0	138858..140105	+	415	163845702	-	Caur_0103	-	Xaa-Pro aminopeptidase family enzyme
100	 59.94	0	140184..141551	+	455	163845703	-	Caur_0104	-	major facilitator transporter
101	 58.64	0	141613..142758	+	381	163845704	-	Caur_0105	-	glycosyl transferase group 1
102	 56.87	0	142857..143489	+	210	163845705	-	Caur_0106	-	lipopolysaccharide biosynthesis protein
103	 57.49	0	143468..144121	+	217	163845706	-	Caur_0107	-	lipopolysaccharide biosynthesis protein
104	 60.62	+1	144194..144838	+	214	163845707	-	Caur_0108	-	exopolysaccharide tyrosine-protein kinase
105	 56.48	0	144907..145593	+	228	163845708	-	Caur_0109	-	response regulator receiver
106	 58.97	0	145630..146682	+	350	163845709	-	Caur_0110	-	histidine kinase
107	 53.15	0	147218..147328	+	36	163845710	-	Caur_0111	-	hypothetical protein
108	 54.56	0	147383..147853	+	156	163845711	-	Caur_0112	-	hypothetical protein
109	 56.96	0	148444..150741	-	765	163845712	-	Caur_0113	-	peptidoglycan glycosyltransferase
110	 54.81	0	150787..151326	-	179	163845713	-	Caur_0114	-	hypothetical protein
111	 57.21	0	151299..152207	-	302	163845714	-	Caur_0115	-	rod shape-determining protein MreC
112	 57.41	0	152211..153290	-	359	163845715	-	Caur_0116	-	cell shape determining protein MreB
113	 58.06	0	153639..155729	+	696	163845716	-	Caur_0117	-	magnesium chelatase
114	 61.93	+1	155819..157381	+	520	163845717	-	Caur_0118	-	RNA-binding S1 domain-containing protein
115	 64.37	+2	157515..157688	+	57	163845718	-	Caur_0119	-	ribosomal protein L34
116	 59.31	0	157782..158189	+	135	163845719	-	Caur_0120	-	ribonuclease P protein component
117	 52.91	-1	158186..159130	+	314	163845720	-	Caur_0121	-	60 kDa inner membrane insertion protein
118	 54.86	0	159170..159838	+	222	163845721	-	Caur_0122	-	single-stranded nucleic acid binding R3H domain-containing protein
119	 55.73	0	160491..160874	-	127	163845722	-	Caur_0123	-	globin
120	 58.79	0	160995..161870	+	291	163845723	-	Caur_0124	-	hypothetical protein
121	 57.83	0	162312..163511	+	399	163845724	-	Caur_0125	-	arsenite-activated ATPase ArsA
122	 65.02	+2	163594..163836	+	80	163845725	-	Caur_0126	-	bacteriochlorophyll C binding protein
123	 56.66	0	163897..164985	+	362	163845726	-	Caur_0127	-	hypothetical protein
124	 60.12	0	165028..166371	+	447	163845727	-	Caur_0128	-	hypothetical protein
125	 56.54	0	166418..167641	+	407	163845728	-	Caur_0129	-	arsenite-transporting ATPase
126	 60.51	+1	167713..168816	+	367	163845729	-	Caur_0130	-	anion-transporting ATPase
127	 56.05	0	168831..169838	+	335	163845730	-	Caur_0131	-	alpha/beta hydrolase fold-containing protein
128	 56.80	0	169851..170732	+	293	163845731	-	Caur_0132	-	hypothetical protein
129	 59.55	0	170748..171464	+	238	163845732	-	Caur_0133	-	hypothetical protein
130	 59.61	0	171489..172154	+	221	163845733	-	Caur_0134	-	putative lipase
131	 57.84	0	172163..172876	+	237	163845734	-	Caur_0135	-	putative lipase
132	 53.89	0	172910..173410	+	166	163845735	-	Caur_0136	-	hypothetical protein
133	 53.80	0	173441..174505	+	354	163845736	-	Caur_0137	-	C-20 methyltransferase BchU
134	 54.58	0	174564..175481	+	305	163845737	-	Caur_0138	-	bacteriochlorophyll/chlorophyll synthetase
135	 57.39	0	175504..175794	+	96	163845738	-	Caur_0139	-	hypothetical protein
136	 62.33	+1	175833..176270	+	145	163845739	-	Caur_0140	-	hypothetical protein
137	 59.06	0	176465..177634	+	389	163845740	-	Caur_0141	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
138	 55.70	0	177650..178105	+	151	163845741	-	Caur_0142	-	hypothetical protein
139	 54.74	0	178272..178556	+	94	163845742	-	Caur_0143	-	hypothetical protein
140	 59.40	0	178643..179605	+	320	163845743	-	Caur_0144	-	peptidase M23B
141	 55.56	0	181900..182655	-	251	163845744	-	Caur_0145	-	ABC-2 type transporter
142	 56.96	0	182667..183614	-	315	163845745	-	Caur_0146	-	daunorubicin resistance ABC transporter ATPase subunit
143	 55.71	0	183964..184383	+	139	163845746	-	Caur_0147	-	hypothetical protein
144	 45.68	-2	185401..186291	+	296	163845747	-	Caur_0148	-	hypothetical protein
145	 54.13	0	186610..188460	+	616	163845748	-	Caur_0149	-	amino acid permease-associated region
146	 61.25	+1	188477..189307	-	276	163845749	-	Caur_0150	-	ribokinase-like domain-containing protein
147	 57.19	0	190653..191549	-	298	163845750	-	Caur_0151	-	alpha/beta hydrolase fold-containing protein
148	 54.66	0	191655..192728	-	357	163845751	-	Caur_0152	-	hypothetical protein
149	 58.05	0	192841..193362	-	173	163845752	-	Caur_0153	-	dual specificity protein phosphatase
150	 53.13	0	193471..193965	+	164	163845753	-	Caur_0154	-	hypothetical protein
151	 59.61	0	193970..194833	+	287	163845754	-	Caur_0155	-	methyltransferase type 12
152	 58.07	0	194826..195209	+	127	163845755	-	Caur_0156	-	dihydroneopterin aldolase
153	 61.41	+1	195206..195871	+	221	163845756	-	Caur_0157	-	5-amino-6-(5-phosphoribosylamino)uracil reductase
154	 59.43	0	195897..196919	+	340	163845757	-	Caur_0158	-	alcohol dehydrogenase
155	 58.27	0	197111..197491	+	126	163845758	-	Caur_0159	-	putative 6-pyruvoyl tetrahydropterin synthase
156	 62.00	+1	197496..198545	+	349	163845759	-	Caur_0160	-	glycosyl transferase group 1
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.