IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
999	 57.98	0	1417156..1418628	+	490	163846602	-	Caur_1025	-	PpiC-type peptidyl-prolyl cis-trans isomerase
1000	 57.63	0	1418674..1419591	+	305	163846603	-	Caur_1026	-	hypothetical protein
1001	 57.59	0	1420291..1422075	+	594	163846604	-	Caur_1027	-	extracellular solute-binding protein
1002	 51.63	-1	1422133..1423143	+	336	163846605	-	Caur_1028	-	binding-protein-dependent transport systems inner membrane component
1003	 55.73	0	1423155..1424132	+	325	163846606	-	Caur_1029	-	binding-protein-dependent transport systems inner membrane component
1004	 58.89	0	1424353..1425522	-	389	163846607	-	Caur_1030	-	acyl-CoA dehydrogenase domain-containing protein
1005	 59.50	0	1425627..1427384	-	585	163846608	-	Caur_1031	-	X-Pro dipeptidyl-peptidase domain-containing protein
1006	 57.69	0	1427842..1428231	+	129	163846609	-	Caur_1032	-	glycoside hydrolase family 13 protein
1007	 55.64	0	1428499..1430430	-	643	163846610	-	Caur_1033	-	hypothetical protein
1008	 56.59	0	1430559..1433039	+	826	163846611	-	Caur_1034	-	ATPase
1009	 57.59	0	1433143..1434222	+	359	163846612	-	Caur_1035	-	GAF domain-containing protein
1010	 56.27	0	1434370..1435620	-	416	163846613	-	Caur_1036	-	hypothetical protein
1011	 57.67	0	1435912..1436400	-	162	163846614	-	Caur_1037	-	hypothetical protein
1012	 58.92	0	1436591..1437145	-	184	163846615	-	Caur_1038	-	hypothetical protein
1013	 57.12	0	1437142..1437780	-	212	163846616	-	Caur_1039	-	ribonuclease H
1014	 56.60	0	1437758..1438393	-	211	163846617	-	Caur_1040	-	methyltransferase type 11
1015	 54.05	0	1439192..1439635	+	147	163846618	-	Caur_1041	-	hypothetical protein
1016	 56.03	0	1440479..1442602	-	707	163846619	-	Caur_1042	-	cyclic nucleotide-binding
1017	 54.28	0	1442747..1443505	+	252	163846620	-	Caur_1043	-	hypothetical protein
1018	 61.82	+1	1443533..1444027	+	164	163846621	-	Caur_1044	-	crossover junction endodeoxyribonuclease RuvC
1019	 60.21	0	1444094..1444774	+	226	163846622	-	Caur_1045	-	hypothetical protein
1020	 59.60	0	1444946..1449193	+	1415	163846623	-	Caur_1046	-	4-phytase
1021	 55.89	0	1449185..1450483	-	432	163846624	-	Caur_1047	-	hypothetical protein
1022	 59.57	0	1450814..1451560	-	248	163846625	-	Caur_1048	-	methyltransferase type 11
1023	 59.03	0	1451619..1453517	-	632	163846626	-	Caur_1049	-	ABC transporter related
1024	 59.84	0	1454248..1454862	+	204	163846627	-	Caur_1050	-	hypothetical protein
1025	 54.44	0	1455552..1456475	-	307	163846628	-	Caur_1051	-	photosynthetic reaction center subunit M
1026	 54.38	0	1456492..1457427	-	311	163846629	-	Caur_1052	-	photosynthetic reaction center subunit L
1027	 55.01	0	1457717..1458625	+	302	163846630	-	Caur_1053	-	glycosyl transferase family protein
1028	 55.39	0	1458636..1460063	+	475	163846631	-	Caur_1054	-	undecaprenyl-phosphate glucose phosphotransferase
1029	 59.14	0	1460235..1462067	-	610	163846632	-	Caur_1055	-	VanW family protein
1030	 56.29	0	1462397..1463254	+	285	163846633	-	Caur_1056	-	apurinic endonuclease Apn1
1031	 58.54	0	1463294..1464031	+	245	163846634	-	Caur_1057	-	helix-hairpin-helix DNA-binding motif-containing protein
1032	 60.56	+1	1464024..1464809	+	261	163846635	-	Caur_1058	-	alpha/beta hydrolase fold-containing protein
1033	 58.70	0	1464846..1467833	-	995	163846636	-	Caur_1059	-	stage II sporulation E family protein
1034	 52.00	-1	1467834..1468583	-	249	163846637	-	Caur_1060	-	anti-anti-sigma factor
1035	 50.71	-1	1468628..1468978	-	116	163846638	-	Caur_1061	-	anti-anti-sigma factor
1036	 58.52	0	1469117..1470172	+	351	163846639	-	Caur_1062	-	hypothetical protein
1037	 59.35	0	1471439..1472176	+	245	163846640	-	Caur_1063	-	hypothetical protein
1038	 58.10	0	1472415..1474409	+	664	163846641	-	Caur_1064	-	excinuclease ABC subunit B
1039	 60.27	0	1474413..1475678	+	421	163846642	-	Caur_1065	-	NERD domain-containing protein
1040	 57.28	0	1478794..1479624	+	276	163846643	-	Caur_1066	-	ATP-NAD/AcoX kinase
1041	 58.78	0	1479694..1480314	+	206	163846644	-	Caur_1067	-	hypothetical protein
1042	 57.58	0	1481820..1483856	-	678	163846645	-	Caur_1068	-	peptidase S9 prolyl oligopeptidase
1043	 55.60	0	1484091..1484813	+	240	163846646	-	Caur_1069	-	helix-turn-helix domain-containing protein
1044	 56.20	0	1485079..1486119	-	346	163846647	-	Caur_1070	-	tagatose 1,6-diphosphate aldolase
1045	 54.39	0	1486333..1486503	+	56	163846648	-	Caur_1071	-	hypothetical protein
1046	 56.81	0	1486590..1488344	+	584	163846649	-	Caur_1072	-	AMP-dependent synthetase and ligase
1047	 58.88	0	1489820..1492273	-	817	163846650	-	Caur_1073	-	glycoside hydrolase family 3 protein
1048	 53.94	0	1492297..1493121	-	274	163846651	-	Caur_1074	-	glycoside hydrolase family protein
1049	 59.03	0	1493218..1495077	-	619	163846652	-	Caur_1075	-	glycoside hydrolase family 3 protein
1050	 53.71	0	1495079..1496143	-	354	163846653	-	Caur_1076	-	binding-protein-dependent transport systems inner membrane component
1051	 52.53	-1	1496143..1497132	-	329	163846654	-	Caur_1077	-	binding-protein-dependent transport systems inner membrane component
1052	 55.89	0	1497198..1498700	-	500	163846655	-	Caur_1078	-	extracellular solute-binding protein
1053	 58.07	0	1500870..1502090	-	406	163846656	-	Caur_1080	-	coenzyme F390 synthetase-like protein
1054	 54.92	0	1502115..1502906	-	263	163846657	-	Caur_1081	-	ABC transporter related
1055	 56.33	0	1502988..1504196	-	402	163846658	-	Caur_1082	-	ABC-type branched-chain amino acid transport systems periplasmic component-like protein
1056	 54.58	0	1504219..1505277	-	352	163846659	-	Caur_1083	-	inner-membrane translocator
1057	 56.35	0	1505308..1506189	-	293	163846660	-	Caur_1084	-	inner-membrane translocator
1058	 56.05	0	1506210..1508159	-	649	163846661	-	Caur_1085	-	AMP-dependent synthetase and ligase
1059	 53.09	0	1508210..1509019	-	269	163846662	-	Caur_1086	-	ABC transporter related
1060	 58.71	0	1509759..1510562	-	267	163846663	-	Caur_1087	-	acetylglutamate kinase
1061	 58.55	0	1510636..1511793	+	385	163846664	-	Caur_1088	-	cell wall hydrolase/autolysin
1062	 62.22	+1	1512360..1515014	-	884	163846665	-	Caur_1089	-	hypothetical protein
1063	 59.66	0	1515029..1516270	-	413	163846666	-	Caur_1090	-	hypothetical protein
1064	 57.11	0	1516285..1520439	-	1384	163846667	-	Caur_1091	-	hypothetical protein
1065	 60.05	0	1520765..1521520	+	251	163846668	-	Caur_1092	-	alpha/beta hydrolase fold-containing protein
1066	 57.73	0	1521690..1524833	-	1047	163846669	-	Caur_1093	-	hyalin
1067	 60.13	0	1526016..1527101	+	361	163846670	-	Caur_1094	-	NADH-ubiquinone oxidoreductase chain 49kDa
1068	 60.15	0	1527188..1528891	+	567	163846671	-	Caur_1095	-	hypothetical protein
1069	 54.91	0	1529013..1529735	+	240	163846672	-	Caur_1096	-	hypothetical protein
1070	 56.47	0	1529738..1531189	+	483	163846673	-	Caur_1097	-	NADH/ubiquinone/plastoquinone (complex I)
1071	 59.03	0	1531212..1532036	+	274	163846674	-	Caur_1098	-	hypothetical protein
1072	 54.92	0	1532071..1533126	+	351	163846675	-	Caur_1099	-	ABC transporter related
1073	 51.67	-1	1533123..1533902	+	259	163846676	-	Caur_1100	-	hypothetical protein
1074	 59.61	0	1533889..1535688	-	599	163846677	-	Caur_1101	-	peptidase M23B
1075	 58.55	0	1536504..1538006	+	500	163846678	-	Caur_1102	-	Orn/DAP/Arg decarboxylase 2
1076	 54.44	0	1538807..1540033	+	408	163846679	-	Caur_1103	-	ROK family protein
1077	 52.91	-1	1540026..1541195	+	389	163846680	-	Caur_1104	-	N-acylglucosamine 2-epimerase
1078	 54.18	0	1541192..1542721	+	509	163846681	-	Caur_1105	-	hypothetical protein
1079	 51.86	-1	1542787..1544184	+	465	163846682	-	Caur_1106	-	extracellular solute-binding protein
1080	 43.46	-2	1544255..1545133	+	292	163846683	-	Caur_1107	-	binding-protein-dependent transport systems inner membrane component
1081	 47.52	-2	1545146..1546012	+	288	163846684	-	Caur_1108	-	binding-protein-dependent transport systems inner membrane component
1082	 53.16	0	1546085..1548808	+	907	163846685	-	Caur_1109	-	glycoside hydrolase family protein
1083	 52.45	-1	1548808..1550355	+	515	163846686	-	Caur_1110	-	glycoside hydrolase family 3 protein
1084	 52.66	-1	1550352..1551386	+	344	163846687	-	Caur_1111	-	glutamine--fructose-6-phosphate transaminase (isomerizing)
1085	 58.30	0	1551536..1552372	+	278	163846688	-	Caur_1112	-	LmbE family protein
1086	 59.12	0	1552434..1553480	+	348	163846689	-	Caur_1113	-	alcohol dehydrogenase
1087	 60.72	+1	1553477..1554334	-	285	163846690	-	Caur_1114	-	dTDP-4-dehydrorhamnose reductase
1088	 55.65	0	1554346..1555080	-	244	163846691	-	Caur_1115	-	ribonuclease III
1089	 59.58	0	1555086..1556327	-	413	163846692	-	Caur_1116	-	3-oxoacyl-(acyl-carrier-protein) synthase 2
1090	 56.71	0	1557396..1558490	-	364	163846693	-	Caur_1118	-	peptidase M50
1091	 54.36	0	1559234..1560208	-	324	163846694	-	Caur_1119	-	GDP-mannose 4,6-dehydratase
1092	 55.02	0	1560291..1560788	+	165	163846695	-	Caur_1120	-	helix-turn-helix domain-containing protein
1093	 56.78	0	1560783..1561925	-	380	163846696	-	Caur_1121	-	succinyl-CoA synthetase, beta subunit
1094	 56.86	0	1562549..1564189	-	546	163846697	-	Caur_1122	-	CTP synthetase
1095	 52.53	-1	1564398..1565069	-	223	163846698	-	Caur_1123	-	Zn-dependent hydrolase of the beta-lactamase fold-like protein
1096	 56.19	0	1565300..1565977	-	225	163846699	-	Caur_1124	-	regulatory protein RecX
1097	 58.80	0	1566474..1567376	-	300	163846700	-	Caur_1125	-	beta-lactamase domain-containing protein
1098	 55.93	0	1567484..1568731	-	415	163846701	-	Caur_1126	-	PSP1 domain-containing protein
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.