IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
961	 58.45	0	1371771..1372403	+	210	163846564	-	Caur_0987	-	phage SPO1 DNA polymerase-related protein
962	 59.03	0	1372491..1373027	+	178	163846565	-	Caur_0988	-	hypothetical protein
963	 57.27	0	1373182..1374852	+	556	163846566	-	Caur_0989	-	beta-lactamase domain-containing protein
964	 55.08	0	1374900..1375460	-	186	163846567	-	Caur_0990	-	deoxycytidine triphosphate deaminase
965	 61.04	+1	1375560..1376660	-	366	163846568	-	Caur_0991	-	glycosyl transferase group 1
966	 60.37	0	1376829..1377209	-	126	163846569	-	Caur_0992	-	glyoxalase/bleomycin resistance protein/dioxygenase
967	 60.20	0	1377202..1378284	-	360	163846570	-	Caur_0993	-	phosphoserine aminotransferase
968	 62.15	+1	1378371..1379654	+	427	163846571	-	Caur_0994	-	amine oxidase
969	 65.20	+2	1379729..1380343	+	204	163846572	-	Caur_0995	-	SH3 type 3 domain-containing protein
970	 60.35	0	1380704..1381954	-	416	163846573	-	Caur_0996	-	hypothetical protein
971	 59.83	0	1381991..1382794	-	267	163846574	-	Caur_0997	-	ABC transporter related
972	 63.15	+1	1382819..1384579	-	586	163846575	-	Caur_0998	-	RND family efflux transporter MFP subunit
973	 56.90	0	1384576..1385220	-	214	163846576	-	Caur_0999	-	regulatory protein TetR
974	 55.06	0	1386363..1386698	-	111	163846577	-	Caur_1000	-	hypothetical protein
975	 56.74	0	1386882..1387163	-	93	163846578	-	Caur_1001	-	hypothetical protein
976	 59.46	0	1388274..1389689	+	471	163846579	-	Caur_1002	-	ammonium transporter
977	 56.88	0	1389745..1390551	-	268	163846580	-	Caur_1003	-	integral membrane protein
978	 61.84	+1	1391568..1391774	+	68	163846581	-	Caur_1004	-	hypothetical protein
979	 56.17	0	1391786..1392166	+	126	163846582	-	Caur_1005	-	hypothetical protein
980	 58.47	0	1392150..1392515	+	121	163846583	-	Caur_1006	-	hypothetical protein
981	 59.98	0	1392557..1394290	+	577	163846584	-	Caur_1007	-	hypothetical protein
982	 60.92	+1	1394836..1395636	-	266	163846585	-	Caur_1008	-	alpha/beta hydrolase fold-containing protein
983	 52.86	-1	1396068..1396697	-	209	163846586	-	Caur_1009	-	hypothetical protein
984	 57.17	0	1397077..1398045	-	322	163846587	-	Caur_1010	-	cytochrome oxidase assembly
985	 57.28	0	1398202..1399533	+	443	163846588	-	Caur_1011	-	peptidase M20
986	 52.68	-1	1399734..1400069	-	111	163846589	-	Caur_1012	-	anti-anti-sigma factor
987	 54.73	0	1400240..1401931	-	563	163846590	-	Caur_1013	-	stage II sporulation E family protein
988	 58.88	0	1401940..1403031	-	363	163846591	-	Caur_1014	-	HEAT repeat-containing PBS lyase
989	 48.44	-2	1403219..1403410	+	63	163846592	-	Caur_1015	-	hypothetical protein
990	 56.37	0	1404009..1407755	+	1248	163846593	-	Caur_1016	-	DNA polymerase III, alpha subunit
991	 58.55	0	1408850..1410919	+	689	163846594	-	Caur_1017	-	molybdopterin oxidoreductase
992	 55.60	0	1410952..1411647	+	231	163846595	-	Caur_1018	-	hypothetical protein
993	 56.07	0	1411678..1412130	+	150	163846596	-	Caur_1019	-	hypothetical protein
994	 57.09	0	1412842..1414083	+	413	163846597	-	Caur_1020	-	hypothetical protein
995	 61.59	+1	1414087..1415445	+	452	163846598	-	Caur_1021	-	selenocysteine synthase
996	 60.23	0	1415442..1416047	+	201	163846599	-	Caur_1022	-	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
997	 54.34	0	1416165..1416602	+	145	163846600	-	Caur_1023	-	ribosomal protein S6
998	 54.68	0	1416655..1417071	+	138	163846601	-	Caur_1024	-	single-strand binding protein
999	 57.98	0	1417156..1418628	+	490	163846602	-	Caur_1025	-	PpiC-type peptidyl-prolyl cis-trans isomerase
1000	 57.63	0	1418674..1419591	+	305	163846603	-	Caur_1026	-	hypothetical protein
1001	 57.59	0	1420291..1422075	+	594	163846604	-	Caur_1027	-	extracellular solute-binding protein
1002	 51.63	-1	1422133..1423143	+	336	163846605	-	Caur_1028	-	binding-protein-dependent transport systems inner membrane component
1003	 55.73	0	1423155..1424132	+	325	163846606	-	Caur_1029	-	binding-protein-dependent transport systems inner membrane component
1004	 58.89	0	1424353..1425522	-	389	163846607	-	Caur_1030	-	acyl-CoA dehydrogenase domain-containing protein
1005	 59.50	0	1425627..1427384	-	585	163846608	-	Caur_1031	-	X-Pro dipeptidyl-peptidase domain-containing protein
1006	 57.69	0	1427842..1428231	+	129	163846609	-	Caur_1032	-	glycoside hydrolase family 13 protein
1007	 55.64	0	1428499..1430430	-	643	163846610	-	Caur_1033	-	hypothetical protein
1008	 56.59	0	1430559..1433039	+	826	163846611	-	Caur_1034	-	ATPase
1009	 57.59	0	1433143..1434222	+	359	163846612	-	Caur_1035	-	GAF domain-containing protein
1010	 56.27	0	1434370..1435620	-	416	163846613	-	Caur_1036	-	hypothetical protein
1011	 57.67	0	1435912..1436400	-	162	163846614	-	Caur_1037	-	hypothetical protein
1012	 58.92	0	1436591..1437145	-	184	163846615	-	Caur_1038	-	hypothetical protein
1013	 57.12	0	1437142..1437780	-	212	163846616	-	Caur_1039	-	ribonuclease H
1014	 56.60	0	1437758..1438393	-	211	163846617	-	Caur_1040	-	methyltransferase type 11
1015	 54.05	0	1439192..1439635	+	147	163846618	-	Caur_1041	-	hypothetical protein
1016	 56.03	0	1440479..1442602	-	707	163846619	-	Caur_1042	-	cyclic nucleotide-binding
1017	 54.28	0	1442747..1443505	+	252	163846620	-	Caur_1043	-	hypothetical protein
1018	 61.82	+1	1443533..1444027	+	164	163846621	-	Caur_1044	-	crossover junction endodeoxyribonuclease RuvC
1019	 60.21	0	1444094..1444774	+	226	163846622	-	Caur_1045	-	hypothetical protein
1020	 59.60	0	1444946..1449193	+	1415	163846623	-	Caur_1046	-	4-phytase
1021	 55.89	0	1449185..1450483	-	432	163846624	-	Caur_1047	-	hypothetical protein
1022	 59.57	0	1450814..1451560	-	248	163846625	-	Caur_1048	-	methyltransferase type 11
1023	 59.03	0	1451619..1453517	-	632	163846626	-	Caur_1049	-	ABC transporter related
1024	 59.84	0	1454248..1454862	+	204	163846627	-	Caur_1050	-	hypothetical protein
1025	 54.44	0	1455552..1456475	-	307	163846628	-	Caur_1051	-	photosynthetic reaction center subunit M
1026	 54.38	0	1456492..1457427	-	311	163846629	-	Caur_1052	-	photosynthetic reaction center subunit L
1027	 55.01	0	1457717..1458625	+	302	163846630	-	Caur_1053	-	glycosyl transferase family protein
1028	 55.39	0	1458636..1460063	+	475	163846631	-	Caur_1054	-	undecaprenyl-phosphate glucose phosphotransferase
1029	 59.14	0	1460235..1462067	-	610	163846632	-	Caur_1055	-	VanW family protein
1030	 56.29	0	1462397..1463254	+	285	163846633	-	Caur_1056	-	apurinic endonuclease Apn1
1031	 58.54	0	1463294..1464031	+	245	163846634	-	Caur_1057	-	helix-hairpin-helix DNA-binding motif-containing protein
1032	 60.56	+1	1464024..1464809	+	261	163846635	-	Caur_1058	-	alpha/beta hydrolase fold-containing protein
1033	 58.70	0	1464846..1467833	-	995	163846636	-	Caur_1059	-	stage II sporulation E family protein
1034	 52.00	-1	1467834..1468583	-	249	163846637	-	Caur_1060	-	anti-anti-sigma factor
1035	 50.71	-1	1468628..1468978	-	116	163846638	-	Caur_1061	-	anti-anti-sigma factor
1036	 58.52	0	1469117..1470172	+	351	163846639	-	Caur_1062	-	hypothetical protein
1037	 59.35	0	1471439..1472176	+	245	163846640	-	Caur_1063	-	hypothetical protein
1038	 58.10	0	1472415..1474409	+	664	163846641	-	Caur_1064	-	excinuclease ABC subunit B
1039	 60.27	0	1474413..1475678	+	421	163846642	-	Caur_1065	-	NERD domain-containing protein
1040	 57.28	0	1478794..1479624	+	276	163846643	-	Caur_1066	-	ATP-NAD/AcoX kinase
1041	 58.78	0	1479694..1480314	+	206	163846644	-	Caur_1067	-	hypothetical protein
1042	 57.58	0	1481820..1483856	-	678	163846645	-	Caur_1068	-	peptidase S9 prolyl oligopeptidase
1043	 55.60	0	1484091..1484813	+	240	163846646	-	Caur_1069	-	helix-turn-helix domain-containing protein
1044	 56.20	0	1485079..1486119	-	346	163846647	-	Caur_1070	-	tagatose 1,6-diphosphate aldolase
1045	 54.39	0	1486333..1486503	+	56	163846648	-	Caur_1071	-	hypothetical protein
1046	 56.81	0	1486590..1488344	+	584	163846649	-	Caur_1072	-	AMP-dependent synthetase and ligase
1047	 58.88	0	1489820..1492273	-	817	163846650	-	Caur_1073	-	glycoside hydrolase family 3 protein
1048	 53.94	0	1492297..1493121	-	274	163846651	-	Caur_1074	-	glycoside hydrolase family protein
1049	 59.03	0	1493218..1495077	-	619	163846652	-	Caur_1075	-	glycoside hydrolase family 3 protein
1050	 53.71	0	1495079..1496143	-	354	163846653	-	Caur_1076	-	binding-protein-dependent transport systems inner membrane component
1051	 52.53	-1	1496143..1497132	-	329	163846654	-	Caur_1077	-	binding-protein-dependent transport systems inner membrane component
1052	 55.89	0	1497198..1498700	-	500	163846655	-	Caur_1078	-	extracellular solute-binding protein
1053	 58.07	0	1500870..1502090	-	406	163846656	-	Caur_1080	-	coenzyme F390 synthetase-like protein
1054	 54.92	0	1502115..1502906	-	263	163846657	-	Caur_1081	-	ABC transporter related
1055	 56.33	0	1502988..1504196	-	402	163846658	-	Caur_1082	-	ABC-type branched-chain amino acid transport systems periplasmic component-like protein
1056	 54.58	0	1504219..1505277	-	352	163846659	-	Caur_1083	-	inner-membrane translocator
1057	 56.35	0	1505308..1506189	-	293	163846660	-	Caur_1084	-	inner-membrane translocator
1058	 56.05	0	1506210..1508159	-	649	163846661	-	Caur_1085	-	AMP-dependent synthetase and ligase
1059	 53.09	0	1508210..1509019	-	269	163846662	-	Caur_1086	-	ABC transporter related
1060	 58.71	0	1509759..1510562	-	267	163846663	-	Caur_1087	-	acetylglutamate kinase
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.