IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
919	 58.90	+1	1106013..1107506	-	497	192361869	-	CJA_0947	-	hypothetical protein
920	 62.29	+1	1107559..1115991	-	2810	192359113	-	CJA_0948	-	RHS Repeat family
921	 49.77	0	1116074..1116937	-	287	192361637	-	CJA_0949	-	hypothetical protein
922	 48.89	0	1117155..1117289	-	44	192360580	-	CJA_0950	-	hypothetical protein
923	 58.33	+1	1117240..1117359	+	39	192362417	-	CJA_0952	-	hypothetical protein
924	 53.89	0	1117356..1118255	-	299	192361155	lpxO	CJA_0951	-	beta-hydroxylase
925	 59.11	+1	1118347..1119285	-	312	192360065	-	CJA_0953	-	two-component transcriptional regulator, LuxR family
926	 54.87	0	1119282..1122713	-	1143	192359445	-	CJA_0954	-	two-component hybrid sensor and regulator
927	 50.62	0	1122879..1123040	-	53	192360711	-	CJA_0955	-	hypothetical protein
928	 51.46	0	1123276..1124472	+	398	192360113	-	CJA_0956	-	amide-urea binding protein
929	 53.61	0	1124591..1125517	+	308	192359228	-	CJA_0957	-	amino acid/sugar ABC transporter, permease protein
930	 53.06	0	1125534..1126760	+	408	192361718	fmdF	CJA_0958	-	ABC transporter permease protein
931	 53.33	0	1126747..1127496	+	249	192359395	-	CJA_0959	-	ABC transporter ATP-binding protein
932	 51.30	0	1127519..1128208	+	229	192362358	-	CJA_0960	-	ABC transporter ATP-binding protein
933	 60.12	+1	1128301..1128621	-	106	192360660	-	CJA_0961	-	hypothetical protein
934	 52.69	0	1128749..1128841	+	30	192359496	-	CJA_0962	-	hypothetical protein
935	 52.72	0	1128876..1130108	+	410	192358995	fmdA	CJA_0963	-	amidase
936	 52.30	0	1130222..1130590	+	122	192361682	-	CJA_0964	-	putative formamidase regulatory protein FmdB
937	 55.16	0	1130680..1131357	-	225	192361987	-	CJA_0965	-	putative transcriptional regulator
938	 59.54	+1	1131840..1132583	+	247	192360317	-	CJA_0966	-	nodulin 21-like protein
939	 58.19	+1	1132606..1133301	-	231	192359717	-	CJA_0967	-	conserved proteinconserved protein
940	 60.65	+1	1133480..1133944	-	154	192361402	-	CJA_0968	-	LPXTG-motif cell wall anchor domain protein
941	 56.59	0	1133823..1135142	+	439	192360552	-	CJA_0969	-	ATP-dependent RNA helicase RhlB
942	 55.17	0	1135189..1136049	+	286	192360895	-	CJA_0970	-	hypothetical protein
943	 57.93	+1	1136076..1136876	+	266	192361680	-	CJA_0971	-	Catalytic LigB subunit of aromatic ring-opening dioxygenase
944	 50.04	0	1136943..1138211	+	422	192362372	rrpX	CJA_0973	-	response regulator protein
945	 50.07	0	1138208..1138954	-	248	192359412	-	CJA_0972	-	putative sulfate transporter
946	 54.15	0	1138966..1139604	-	212	192359219	-	CJA_0974	-	peptidase, rhomboid family
947	 46.29	-1	1139867..1146178	+	2103	192359982	-	CJA_0975	-	von Willebrand factor type A domain protein
948	 42.69	-1	1146245..1149406	+	1053	192360792	-	CJA_0976	-	hypothetical protein
949	 25.13	-2	1149607..1149801	+	64	192361638	-	CJA_0977	-	hypothetical protein
950	 41.63	-1	1150683..1151345	+	220	192358938	-	CJA_0978	-	hypothetical protein
951	 31.48	-2	1153869..1154354	+	161	192360011	-	CJA_0979	-	hypothetical protein
952	 55.39	0	1154650..1155048	+	132	192361556	-	CJA_0980	-	hypothetical protein
953	 53.86	0	1155076..1156590	+	504	192362378	-	CJA_0981	-	peptidase, M56 family
954	 51.36	0	1156704..1157363	+	219	192358984	-	CJA_0982	-	TonB2
955	 53.31	0	1157466..1158266	+	266	192359848	-	CJA_0983	-	hypothetical protein
956	 53.66	0	1158310..1159701	-	463	192362422	hemN	CJA_0984	-	oxygen-independent coproporphyrinogen III oxidase
957	 51.22	0	1159791..1160489	+	232	192359416	-	CJA_0985	-	SM-20 domain protein
958	 53.24	0	1160587..1162224	+	545	192360139	-	CJA_0986	-	Domain of unknown function (DUF404) family
959	 52.59	0	1162226..1163191	+	321	192360274	-	CJA_0987	-	Bacterial domain of unknown function (DUF403) superfamily
960	 53.16	0	1163789..1166461	+	890	192360511	chi18B	CJA_0988	-	endo-chitinase, putative, chi18B
961	 37.63	-2	1166471..1166563	-	30	192360712	-	CJA_0989	-	hypothetical protein
962	 40.40	-2	1166553..1166651	-	32	192361415	-	CJA_0990	-	hypothetical protein
963	 50.99	0	1166684..1168144	-	486	192361531	-	CJA_0991	-	cardiolipin synthase
964	 46.90	0	1168187..1168945	-	252	192362362	-	CJA_0992	-	hypothetical protein
965	 54.24	0	1168935..1169417	+	160	192361965	-	CJA_0993	-	cytosolic long-chain acyl-CoA thioester hydrolase family protein
966	 54.73	0	1169543..1170430	-	295	192360231	-	CJA_0994	-	Transglutaminase-like superfamily domain protein
967	 53.92	0	1170427..1173030	-	867	192361135	-	CJA_0995	-	Domain of unknown function (DUF404) family
968	 55.95	0	1173479..1174906	+	475	192361966	chi19A	CJA_0996	-	chitinase, putative, chi19A
969	 48.03	0	1175126..1175506	-	126	192358929	-	CJA_0997	-	hypothetical protein
970	 53.28	0	1175160..1177610	+	816	192359812	-	CJA_0998	-	putative lipoprotein
971	 60.20	+1	1177698..1181159	-	1153	192359058	-	CJA_0999	-	Transglutaminase-like superfamily domain protein
972	 52.57	0	1181363..1182568	+	401	192360496	-	CJA_1000	-	membrane protein, PerM family
973	 54.29	0	1182589..1183323	-	244	192361052	-	CJA_1001	-	hypothetical protein
974	 53.65	0	1183457..1184278	-	273	192361891	-	CJA_1002	-	small-conductance mechanosensitive channel
975	 52.72	0	1184305..1185021	-	238	192362170	-	CJA_1003	-	electron transport complex, RnfABCDGE type, E subunit
976	 54.78	0	1185018..1185665	-	215	192359703	-	CJA_1004	-	rnfE
977	 57.33	0	1185680..1186750	-	356	192361584	-	CJA_1005	-	Electron transport complex protein rnfD
978	 58.24	+1	1186751..1189111	-	786	192362376	-	CJA_1006	-	Electron transport complex protein RnfC
979	 58.18	+1	1189112..1189783	-	223	192358977	-	CJA_1007	-	Electron transport complex protein rnfB
980	 52.62	0	1189808..1190398	-	196	192359743	-	CJA_1008	-	RnfA-related protein
981	 56.81	0	1190577..1192616	-	679	192359290	metG	CJA_1009	-	methionyl-tRNA synthetase
982	 47.78	0	1192846..1193205	+	119	192360016	-	CJA_1010	-	hypothetical protein
983	 50.42	0	1193295..1193768	+	157	192360004	greB	CJA_1011	-	transcription elongation factor GreB
984	 43.36	-1	1193932..1194270	+	112	192358935	-	CJA_1012	-	prevent-host-death family protein
985	 38.15	-2	1194251..1194520	+	89	192362499	-	CJA_1013	-	addiction module toxin, Txe/YoeB family
986	 39.60	-2	1194605..1195051	-	148	192361492	-	CJA_1014	-	hypothetical protein
987	 57.64	+1	1195409..1197379	-	656	192359579	-	CJA_1015	-	prolyl oligopeptidase family
988	 57.46	0	1197370..1198737	+	455	192362306	mesJ	CJA_1016	-	mesJ protein
989	 56.33	0	1198835..1201078	-	747	192361256	-	CJA_1017	-	putative lipoprotein
990	 54.98	0	1201358..1203283	-	641	192360901	-	CJA_1018	-	Y4iJ
991	 50.92	0	1203635..1204180	+	181	192359693	-	CJA_1020	-	hypothetical protein
992	 47.31	0	1203794..1203886	-	30	192360315	-	CJA_1019	-	hypothetical protein
993	 49.73	0	1204186..1204551	-	121	192359471	-	CJA_1021	-	hypothetical protein
994	 54.76	0	1204567..1206027	-	486	192360418	-	CJA_1022	-	hypothetical protein
995	 55.99	0	1206086..1206394	+	102	192361185	-	CJA_1023	-	rieske [2Fe-2S] domain protein
996	 53.56	0	1206421..1206855	+	144	192359160	-	CJA_1024	-	hypothetical protein
997	 55.24	0	1206833..1207576	+	247	192359174	gt51A	CJA_1025	-	murein polymerase, putative, gt51A
998	 55.31	0	1207727..1207999	+	90	192360014	-	CJA_1026	-	hypothetical protein
999	 58.03	+1	1208039..1209844	+	601	192360897	aspS	CJA_1027	-	aspartyl-tRNA synthetase
1000	 55.65	0	1209946..1210689	+	247	192361730	-	CJA_1028	-	conserved hypothetical protein TIGR01033
1001	 54.65	0	1210727..1211317	+	196	192362195	ruvC	CJA_1029	-	crossover junction endodeoxyribonuclease RuvC
1002	 52.43	0	1211340..1211957	+	205	192360858	ruvA	CJA_1030	-	Holliday junction DNA helicase RuvA
1003	 54.66	0	1212009..1213049	+	346	192359396	ruvB	CJA_1031	-	Holliday junction DNA helicase RuvB
1004	 51.09	0	1213386..1214072	+	228	192362359	tolQ-2	CJA_1032	-	tolQ protein
1005	 46.80	0	1214104..1214541	+	145	192361136	tolR	CJA_1033	-	TolR protein
1006	 49.52	0	1214559..1215398	+	279	192360351	-	CJA_1034	-	putative biopolymer transport protein TolA
1007	 48.52	0	1215395..1216678	+	427	192362452	tolB	CJA_1035	-	tolB protein
1008	 50.97	0	1216730..1217194	+	154	192361426	-	CJA_1036	-	outer membrane protein
1009	 46.69	0	1217210..1217965	+	251	192360793	-	CJA_1037	-	putative 34 kDa outer membrane protein
1010	 48.24	0	1218585..1219832	+	415	192359786	-	CJA_1038	-	hypothetical protein
1011	 49.73	0	1219864..1221138	-	424	192360663	-	CJA_1039	-	hypothetical protein
1012	 51.03	0	1221294..1221875	-	193	192360674	-	CJA_1040	-	inactive regulatory protein
1013	 52.67	0	1221979..1223007	-	342	192361765	ndpA	CJA_1041	-	nucleoid-associated protein NdpA superfamily
1014	 54.72	0	1223084..1223443	+	119	192359516	-	CJA_1042	-	endoribonuclease L-PSP family protein
1015	 55.26	0	1223571..1226051	+	826	192360572	-	CJA_1044	-	acetyltransferase, GNAT family
1016	 53.26	0	1226046..1227074	-	342	192361251	hda	CJA_1043	-	histone deacetylase family protein
1017	 53.59	0	1227045..1229216	+	723	192359127	-	CJA_1045	-	sulfatase
1018	 51.56	0	1229290..1231023	+	577	192359959	-	CJA_1046	-	hypothetical protein
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.