IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
874	 49.93	0	1050633..1052066	-	477	192359426	trg3	CJA_0890	-	peptidase, M23/M37 family
875	 50.31	0	1052287..1053594	+	435	192360287	tyrS	CJA_0891	-	tyrosyl-tRNA synthetase
876	 46.30	-1	1053581..1053796	+	71	192360889	-	CJA_0893	-	hypothetical protein
877	 47.71	0	1065398..1066183	+	261	192358810	-	CJA_0905	-	hypothetical protein
878	 43.48	-1	1066194..1066676	+	160	192360128	rimI	CJA_0906	-	ribosomal-protein-alanine acetyltransferase
879	 47.16	0	1066679..1067242	-	187	192360912	-	CJA_0907	-	DNA-binding response regulator
880	 48.15	0	1067235..1068584	-	449	192362216	-	CJA_0908	-	sensor histidine kinase
881	 52.38	0	1068700..1070148	+	482	192359506	-	CJA_0909	-	Na+-driven multidrug efflux pump
882	 48.86	0	1070222..1071799	+	525	192360585	prfC	CJA_0910	-	peptide chain release factor 3
883	 47.66	0	1071803..1072144	+	113	192361963	-	CJA_0911	-	hypothetical protein
884	 50.98	0	1072233..1072793	+	186	192361105	-	CJA_0912	-	hypothetical protein
885	 50.50	0	1072850..1074043	-	397	192361603	-	CJA_0913	-	TonB family C-terminal domain protein
886	 48.15	0	1074256..1074957	+	233	192360285	-	CJA_0914	-	cyclic nucleotide-binding domain protein
887	 47.95	0	1075035..1075718	+	227	192361764	-	CJA_0915	-	hypothetical protein
888	 50.89	0	1075817..1076659	-	280	192361566	-	CJA_0916	-	hypothetical protein
889	 35.24	-2	1076745..1076954	-	69	192360084	-	CJA_0917	-	hypothetical protein
890	 42.59	-1	1076983..1077090	+	35	192358802	-	CJA_0918	-	hypothetical protein
891	 49.09	0	1078050..1078487	+	145	192361107	-	CJA_0919	-	TonB system transport protein ExbD2
892	 47.24	0	1078549..1079073	-	174	192360078	-	CJA_0920	-	YbaK / prolyl-tRNA synthetases associated domain protein
893	 54.05	0	1079320..1080603	-	427	192359648	aspC	CJA_0921	-	aspartate transaminase
894	 52.76	0	1080669..1082603	-	644	192360718	-	CJA_0922	-	Zn-dependent protease with chaperone function
895	 51.35	0	1082639..1083232	-	197	192361271	-	CJA_0923	-	hypothetical protein
896	 50.41	0	1083354..1083968	-	204	192360475	-	CJA_0924	-	21 kDa hemolysin precursor
897	 52.31	0	1083968..1084552	-	194	192360311	gmhA	CJA_0925	-	phosphoheptose isomerase
898	 52.23	0	1084664..1085044	-	126	192362210	-	CJA_0926	-	conserved hypothetical protein TIGR00252
899	 58.05	+1	1085047..1086972	-	641	192360844	-	CJA_0927	-	LppC putative lipoprotein
900	 57.40	0	1087030..1087935	+	301	192360024	-	CJA_0928	-	conserved hypothetical protein TIGR00096
901	 51.09	0	1087987..1090368	-	793	192358890	-	CJA_0929	-	putative TonB-dependent receptor
902	 40.62	-2	1090357..1090452	+	31	192361605	-	CJA_0930	-	hypothetical protein
903	 51.69	0	1091061..1091888	-	275	192361314	-	CJA_0931	-	hypothetical protein
904	 57.60	+1	1091971..1092312	-	113	192362119	-	CJA_0932	-	hypothetical protein
905	 51.74	0	1092309..1092509	-	66	192359634	-	CJA_0933	-	hypothetical protein
906	 52.32	0	1092475..1093206	+	243	192360514	-	CJA_0934	-	predicted transcriptional regulator
907	 60.43	+1	1093343..1093759	+	138	192359548	-	CJA_0935	-	glyoxylase I family protein
908	 54.15	0	1093800..1094726	+	308	192360605	-	CJA_0936	-	hypothetical protein
909	 49.37	0	1094756..1096258	+	500	192361659	-	CJA_0937	-	hypothetical protein
910	 48.88	0	1096460..1097437	+	325	192358941	-	CJA_0938	-	hypothetical protein
911	 49.88	0	1097507..1098364	-	285	192359997	-	CJA_0939	-	nitrate transporter system, ATPase component
912	 43.41	-1	1098363..1098491	+	42	192360993	-	CJA_0940	-	hypothetical protein
913	 50.87	0	1098795..1099946	+	383	192359108	-	CJA_0941	-	putative TPR domain protein
914	 57.14	0	1100197..1101015	+	272	192360143	-	CJA_0942	-	Domain of Unknown Function (DUF1080) superfamily
915	 55.23	0	1101067..1101582	+	171	192362439	-	CJA_0943	-	putative glutathione peroxidase
916	 54.92	0	1101614..1102660	+	348	192361661	-	CJA_0944	-	hypothetical protein
917	 47.89	0	1102712..1103515	+	267	192360217	-	CJA_0945	-	transmembrane protein
918	 49.97	0	1103502..1105160	+	552	192361436	-	CJA_0946	-	sulfatase
919	 58.90	+1	1106013..1107506	-	497	192361869	-	CJA_0947	-	hypothetical protein
920	 62.29	+1	1107559..1115991	-	2810	192359113	-	CJA_0948	-	RHS Repeat family
921	 49.77	0	1116074..1116937	-	287	192361637	-	CJA_0949	-	hypothetical protein
922	 48.89	0	1117155..1117289	-	44	192360580	-	CJA_0950	-	hypothetical protein
923	 58.33	+1	1117240..1117359	+	39	192362417	-	CJA_0952	-	hypothetical protein
924	 53.89	0	1117356..1118255	-	299	192361155	lpxO	CJA_0951	-	beta-hydroxylase
925	 59.11	+1	1118347..1119285	-	312	192360065	-	CJA_0953	-	two-component transcriptional regulator, LuxR family
926	 54.87	0	1119282..1122713	-	1143	192359445	-	CJA_0954	-	two-component hybrid sensor and regulator
927	 50.62	0	1122879..1123040	-	53	192360711	-	CJA_0955	-	hypothetical protein
928	 51.46	0	1123276..1124472	+	398	192360113	-	CJA_0956	-	amide-urea binding protein
929	 53.61	0	1124591..1125517	+	308	192359228	-	CJA_0957	-	amino acid/sugar ABC transporter, permease protein
930	 53.06	0	1125534..1126760	+	408	192361718	fmdF	CJA_0958	-	ABC transporter permease protein
931	 53.33	0	1126747..1127496	+	249	192359395	-	CJA_0959	-	ABC transporter ATP-binding protein
932	 51.30	0	1127519..1128208	+	229	192362358	-	CJA_0960	-	ABC transporter ATP-binding protein
933	 60.12	+1	1128301..1128621	-	106	192360660	-	CJA_0961	-	hypothetical protein
934	 52.69	0	1128749..1128841	+	30	192359496	-	CJA_0962	-	hypothetical protein
935	 52.72	0	1128876..1130108	+	410	192358995	fmdA	CJA_0963	-	amidase
936	 52.30	0	1130222..1130590	+	122	192361682	-	CJA_0964	-	putative formamidase regulatory protein FmdB
937	 55.16	0	1130680..1131357	-	225	192361987	-	CJA_0965	-	putative transcriptional regulator
938	 59.54	+1	1131840..1132583	+	247	192360317	-	CJA_0966	-	nodulin 21-like protein
939	 58.19	+1	1132606..1133301	-	231	192359717	-	CJA_0967	-	conserved proteinconserved protein
940	 60.65	+1	1133480..1133944	-	154	192361402	-	CJA_0968	-	LPXTG-motif cell wall anchor domain protein
941	 56.59	0	1133823..1135142	+	439	192360552	-	CJA_0969	-	ATP-dependent RNA helicase RhlB
942	 55.17	0	1135189..1136049	+	286	192360895	-	CJA_0970	-	hypothetical protein
943	 57.93	+1	1136076..1136876	+	266	192361680	-	CJA_0971	-	Catalytic LigB subunit of aromatic ring-opening dioxygenase
944	 50.04	0	1136943..1138211	+	422	192362372	rrpX	CJA_0973	-	response regulator protein
945	 50.07	0	1138208..1138954	-	248	192359412	-	CJA_0972	-	putative sulfate transporter
946	 54.15	0	1138966..1139604	-	212	192359219	-	CJA_0974	-	peptidase, rhomboid family
947	 46.29	-1	1139867..1146178	+	2103	192359982	-	CJA_0975	-	von Willebrand factor type A domain protein
948	 42.69	-1	1146245..1149406	+	1053	192360792	-	CJA_0976	-	hypothetical protein
949	 25.13	-2	1149607..1149801	+	64	192361638	-	CJA_0977	-	hypothetical protein
950	 41.63	-1	1150683..1151345	+	220	192358938	-	CJA_0978	-	hypothetical protein
951	 31.48	-2	1153869..1154354	+	161	192360011	-	CJA_0979	-	hypothetical protein
952	 55.39	0	1154650..1155048	+	132	192361556	-	CJA_0980	-	hypothetical protein
953	 53.86	0	1155076..1156590	+	504	192362378	-	CJA_0981	-	peptidase, M56 family
954	 51.36	0	1156704..1157363	+	219	192358984	-	CJA_0982	-	TonB2
955	 53.31	0	1157466..1158266	+	266	192359848	-	CJA_0983	-	hypothetical protein
956	 53.66	0	1158310..1159701	-	463	192362422	hemN	CJA_0984	-	oxygen-independent coproporphyrinogen III oxidase
957	 51.22	0	1159791..1160489	+	232	192359416	-	CJA_0985	-	SM-20 domain protein
958	 53.24	0	1160587..1162224	+	545	192360139	-	CJA_0986	-	Domain of unknown function (DUF404) family
959	 52.59	0	1162226..1163191	+	321	192360274	-	CJA_0987	-	Bacterial domain of unknown function (DUF403) superfamily
960	 53.16	0	1163789..1166461	+	890	192360511	chi18B	CJA_0988	-	endo-chitinase, putative, chi18B
961	 37.63	-2	1166471..1166563	-	30	192360712	-	CJA_0989	-	hypothetical protein
962	 40.40	-2	1166553..1166651	-	32	192361415	-	CJA_0990	-	hypothetical protein
963	 50.99	0	1166684..1168144	-	486	192361531	-	CJA_0991	-	cardiolipin synthase
964	 46.90	0	1168187..1168945	-	252	192362362	-	CJA_0992	-	hypothetical protein
965	 54.24	0	1168935..1169417	+	160	192361965	-	CJA_0993	-	cytosolic long-chain acyl-CoA thioester hydrolase family protein
966	 54.73	0	1169543..1170430	-	295	192360231	-	CJA_0994	-	Transglutaminase-like superfamily domain protein
967	 53.92	0	1170427..1173030	-	867	192361135	-	CJA_0995	-	Domain of unknown function (DUF404) family
968	 55.95	0	1173479..1174906	+	475	192361966	chi19A	CJA_0996	-	chitinase, putative, chi19A
969	 48.03	0	1175126..1175506	-	126	192358929	-	CJA_0997	-	hypothetical protein
970	 53.28	0	1175160..1177610	+	816	192359812	-	CJA_0998	-	putative lipoprotein
971	 60.20	+1	1177698..1181159	-	1153	192359058	-	CJA_0999	-	Transglutaminase-like superfamily domain protein
972	 52.57	0	1181363..1182568	+	401	192360496	-	CJA_1000	-	membrane protein, PerM family
973	 54.29	0	1182589..1183323	-	244	192361052	-	CJA_1001	-	hypothetical protein
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.