IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
723	 37.50	-2	871525..871620	+	31	192361495	-	CJA_0738	-	hypothetical protein
724	 51.36	0	871692..872168	+	158	192362105	-	CJA_0739	-	Adenylate cyclase
725	 48.28	0	872240..872500	+	86	192359657	-	CJA_0740	-	predicted membrane protein
726	 49.60	0	872535..873284	-	249	192358867	-	CJA_0741	-	Sec-independent protein translocase TatC
727	 59.05	+1	873281..873766	-	161	192359979	-	CJA_0742	-	TatB
728	 50.00	0	873780..874067	-	95	192359122	-	CJA_0743	-	twin arginine-targeting protein translocase, TatA/E family
729	 50.74	0	874090..874428	-	112	192360158	-	CJA_0744	-	phosphoribosyl-ATP pyrophosphohydrolase
730	 52.49	0	874431..874811	-	126	192361358	hisIE	CJA_0745	-	bifunctional protein phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase
731	 58.85	+1	874836..875654	-	272	192362228	-	CJA_0746	-	oxidoreductase, aldo/keto reductase family
732	 59.86	+1	875654..876946	-	430	192359482	-	CJA_0747	-	oxidoreductase, FAD-binding
733	 55.98	0	877081..877950	+	289	192358864	-	CJA_0748	-	dTDP-4-rhamnose reductase-related protein
734	 55.78	0	878026..879237	-	403	192360198	fabB	CJA_0749	-	beta-ketoacyl-ACP synthase I
735	 56.38	0	879356..879880	-	174	192361076	fabA	CJA_0750	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA
736	 57.42	0	879990..880952	-	320	192361220	ispB	CJA_0751	-	octaprenyl-diphosphate synthase
737	 53.36	0	881148..881906	-	252	192358911	mtaA	CJA_0752	-	HetI
738	 53.21	0	882051..882548	+	165	192359861	-	CJA_0753	-	peptidyl-prolyl cis-trans isomerase, FkbP family
739	 52.48	0	882698..884974	+	758	192360747	-	CJA_0754	-	two-component hybrid sensor and regulator
740	 48.77	0	884959..887271	+	770	192361575	-	CJA_0755	-	TonB-dependent receptor
741	 50.06	0	887439..888281	+	280	192361091	-	CJA_0756	-	putative citrate synthase I
742	 49.83	0	888295..889155	+	286	192360316	-	CJA_0758	-	hypothetical protein
743	 53.84	0	889152..891755	-	867	192359514	-	CJA_0757	-	putative signal transduction protein
744	 55.44	0	891853..893625	-	590	192362487	-	CJA_0759	-	putative acetolactate synthase large subunit
745	 55.62	0	894135..896885	+	916	192360854	-	CJA_0760	-	hypothetical protein
746	 47.59	0	897040..898224	+	394	192360258	-	CJA_0761	-	transcriptional regulator, AraC family
747	 53.27	0	898266..899519	-	417	192360183	-	CJA_0762	-	Molybdopterin biosynthesis enzyme
748	 54.99	0	899813..901714	-	633	192362484	rpoD	CJA_0764	-	transcription initiation factor sigma 70
749	 58.03	+1	901780..903864	-	694	192361440	dnaG	CJA_0765	-	DNA primase
750	 55.96	0	903932..904426	-	164	192359799	-	CJA_0766	-	GatB/Yqey domain superfamily
751	 53.24	0	904491..904706	-	71	192359130	rpsU	CJA_0767	-	ribosomal protein S21
752	 56.75	0	904920..905948	+	342	192361453	gcp	CJA_0768	-	O-sialoglycoprotein endopeptidase
753	 54.40	0	905959..906333	+	124	192360870	folB	CJA_0769	-	dihydroneopterin aldolase
754	 49.71	0	906330..906848	+	172	192362205	folK-2	CJA_0770	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
755	 52.32	0	906894..907862	-	322	192361349	-	CJA_0771	-	putative magnesium and cobalt transport protein CorA
756	 55.56	0	907879..908625	-	248	192362180	-	CJA_0772	-	oxidoreductase, short chain dehydrogenase/reductase family
757	 55.53	0	908648..909967	-	439	192361371	cca	CJA_0773	-	tRNA nucleotidyltransferase
758	 49.76	0	910258..911280	+	340	192360017	-	CJA_0774	-	Integral membrane protein DUF6 domain protein
759	 45.20	-1	911510..912175	+	221	192359119	-	CJA_0775	-	hypothetical protein
760	 39.60	-2	912269..914359	+	696	192359532	-	CJA_0776	-	hypothetical protein
761	 55.11	0	915128..916174	+	348	192360705	-	CJA_0777	-	UDP-glucose 4-epimerase
762	 57.17	0	916572..919772	+	1066	192361222	cbp32A	CJA_0778	-	carbohydrate binding protein, putative, cbp32A
763	 49.71	0	919862..920551	-	229	192360494	-	CJA_0779	-	hypothetical protein
764	 47.14	0	920545..921696	+	383	192361576	-	CJA_0780	-	ISCja2, transposase
765	 57.67	+1	922327..923715	-	462	192362360	phoQ	CJA_0781	-	Sensory transduction histidine kinase
766	 56.87	0	923718..924401	-	227	192359014	phoP	CJA_0782	-	DNA-binding response regulator
767	 57.38	0	924425..924844	-	139	192360100	-	CJA_0783	-	hypothetical protein
768	 60.85	+1	924915..925499	-	194	192360770	-	CJA_0784	-	hypothetical protein
769	 57.31	0	925770..927041	+	423	192361836	proA	CJA_0785	-	gamma-glutamyl phosphate reductase
770	 62.74	+1	927060..927695	+	211	192362352	nadD	CJA_0786	-	nicotinate (nicotinamide) nucleotide adenylyltransferase
771	 53.12	0	927723..928091	+	122	192359651	-	CJA_0787	-	iojap domain protein
772	 56.84	0	928179..928697	+	172	192360291	-	CJA_0788	-	conserved hypothetical protein TIGR00246
773	 56.04	0	928733..930736	+	667	192360908	mrdA-2	CJA_0789	-	penicillin-binding protein 2
774	 56.97	0	930733..931887	+	384	192361472	rodA	CJA_0790	-	rod shape-determining protein RodA
775	 51.85	0	931910..932908	+	332	192361833	plt103A	CJA_0791	-	peptidoglycan lytic transglycosylase, putative, plt103A
776	 53.97	0	932946..933827	+	293	192359125	-	CJA_0792	-	Six5
777	 52.87	0	933931..935148	+	405	192360123	-	CJA_0793	-	D-alanyl-D-alanine carboxypeptidase family
778	 52.89	0	935217..935804	-	195	192362288	-	CJA_0794	-	thioredoxin family protein
779	 55.68	0	935895..936167	+	90	192359538	-	CJA_0795	-	hypothetical protein
780	 56.64	0	936168..936815	+	215	192360649	lipB	CJA_0796	-	lipoate-protein ligase B
781	 54.78	0	936876..937910	+	344	192360748	lipA	CJA_0797	-	lipoic acid synthetase
782	 54.00	0	938052..938564	+	170	192361785	-	CJA_0798	-	putative acetyltransferase, GNAT family
783	 47.46	0	938950..942375	+	1141	192359097	gly43E	CJA_0799	-	beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43E
784	 46.46	-1	942508..945333	+	941	192360025	-	CJA_0800	-	putative TonB-dependent receptor
785	 51.92	0	945654..947375	+	573	192359190	-	CJA_0801	-	methyl-accepting chemotaxis protein
786	 48.98	0	947394..947687	+	97	192361696	-	CJA_0802	-	hypothetical protein
787	 51.93	0	948041..950449	+	802	192360871	-	CJA_0803	-	hypothetical protein
788	 51.55	0	950553..950810	-	85	192361646	-	CJA_0804	-	hypothetical protein
789	 54.31	0	950916..951959	-	347	192360824	arb43A	CJA_0805	-	arabinanase and alpha-L-arabinofuranosidase, arb43A
790	 55.87	0	952169..953242	+	357	192360536	abf43L	CJA_0806	-	alpha-L-arabinfuranosidase, putative, abf43L
791	 55.02	0	953239..954303	+	354	192359696	-	CJA_0807	-	aldose 1-epimerase
792	 37.50	-2	954415..954870	-	151	192359167	-	CJA_0808	-	Peptidase C39 family superfamily
793	 53.88	0	957032..957289	-	85	192361355	-	CJA_0809	-	hypothetical protein
794	 42.36	-1	958342..959172	-	276	192359086	-	CJA_0810	-	hypothetical protein
795	 36.27	-2	959448..959549	+	33	192361625	-	CJA_0811	-	hypothetical protein
796	 42.64	-1	960000..960332	-	110	192359977	-	CJA_0812	-	hypothetical protein
797	 45.61	-1	961000..961113	-	37	192359094	-	CJA_0813	-	hypothetical protein
798	 36.04	-2	961865..962788	-	307	192362160	-	CJA_0814	-	hypothetical protein
799	 35.32	-2	962913..963716	-	267	192361165	-	CJA_0815	-	hypothetical protein
800	 54.73	0	964146..965510	+	454	192361746	gly43C	CJA_0816	-	beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43C
801	 55.54	0	965615..967555	+	646	192360666	agd97A	CJA_0817	-	alpha-glucosidase, putative, adg97A
802	 53.41	0	967618..969540	+	640	192360119	gly43D	CJA_0818	-	beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43D
803	 53.65	0	969737..971611	+	624	192359107	abf43M	CJA_0819	-	alpha-L-arabinfuranosidase, putative, abf43M
804	 43.07	-1	971650..972060	+	136	192361207	-	CJA_0820	-	hypothetical protein
805	 42.71	-1	972078..972461	+	127	192362287	-	CJA_0821	-	hypothetical protein
806	 47.92	0	972668..973510	-	280	192359546	-	CJA_0822	-	transposase
807	 44.81	-1	973507..973776	-	89	192360588	-	CJA_0823	-	transposase
808	 35.51	-2	974289..974930	-	213	192361800	-	CJA_0824	-	hypothetical protein
809	 43.25	-1	974930..975181	-	83	192359528	-	CJA_0825	-	hypothetical protein
810	 47.90	0	975579..975887	-	102	192359802	-	CJA_0826	-	ParB-like nuclease domain
811	 47.99	0	976207..977100	-	297	192361128	-	CJA_0827	-	ParB-like nuclease domain
812	 52.44	0	977856..980414	-	852	192361022	-	CJA_0828	-	putative lipoprotein
813	 50.91	0	980428..982236	-	602	192362083	-	CJA_0829	-	hypothetical protein
814	 56.96	0	982295..982768	-	157	192359077	-	CJA_0830	-	fibronectin type III domain protein
815	 55.45	0	983162..985078	+	638	192360396	-	CJA_0831	-	Cellulose or protein binding domain
816	 54.39	0	985332..986765	+	477	192360631	-	CJA_0832	-	Cip2
817	 54.71	0	986825..987535	-	236	192361443	-	CJA_0833	-	transcriptional regulator, GntR family
818	 58.24	+1	987717..990539	-	940	192360825	-	CJA_0834	-	Diguanylate cyclase/phosphodiesterase domain 2 (EAL)
819	 56.08	0	990848..992188	-	446	192361678	ndh	CJA_0835	-	NADH dehydrogenase
820	 60.17	+1	992252..993745	-	497	192359774	-	CJA_0836	-	hypothetical protein
821	 60.63	+1	993772..996009	-	745	192359870	-	CJA_0837	-	hypothetical protein
822	 61.52	+1	996071..997060	-	329	192362368	-	CJA_0838	-	hypothetical protein
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.