IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
687	 51.09	0	837163..837990	+	275	192359072	rplB	CJA_0702	-	ribosomal protein L2
688	 50.54	0	838025..838303	+	92	192359760	rpsS	CJA_0703	-	ribosomal protein S19
689	 48.65	0	838316..838648	+	110	192361611	rplV	CJA_0704	-	ribosomal protein L22
690	 50.37	0	838660..839340	+	226	192362436	rpsC	CJA_0705	-	ribosomal protein S3
691	 51.21	0	839353..839766	+	137	192360491	rplP	CJA_0706	-	ribosomal protein L16
692	 43.59	-1	839763..839957	+	64	192361324	rpmC	CJA_0707	-	ribosomal protein L29
693	 44.19	-1	839959..840225	+	88	192361056	rpsQ	CJA_0708	-	ribosomal protein S17
694	 47.97	0	840263..840631	+	122	192361879	rplN	CJA_0709	-	ribosomal protein L14
695	 44.65	-1	840666..840983	+	105	192361783	rplX	CJA_0710	-	ribosomal protein L24
696	 47.41	0	840990..841529	+	179	192359103	rplE	CJA_0711	-	50S ribosomal protein L5
697	 50.98	0	841540..841845	+	101	192360599	rpsN	CJA_0712	-	ribosomal protein S14p/S29e
698	 48.09	0	841876..842268	+	130	192359508	rpsH	CJA_0713	-	ribosomal protein S8
699	 48.50	0	842282..842815	+	177	192360852	rplF	CJA_0714	-	50S ribosomal protein L6
700	 51.57	0	842825..843175	+	116	192359756	rplR	CJA_0715	-	ribosomal protein L18
701	 47.76	0	843185..843697	+	170	192359431	rpsE	CJA_0716	-	ribosomal protein S5
702	 46.88	0	843727..843918	+	63	192360262	rpmD	CJA_0717	-	ribosomal protein L30
703	 49.66	0	843920..844354	+	144	192361117	rplO	CJA_0718	-	ribosomal protein L15
704	 47.01	0	844365..845702	+	445	192361952	-	CJA_0719	-	preprotein translocase, SecY subunit
705	 47.01	0	845725..845841	+	38	192360307	-	CJA_0720	-	ribosomal protein L36
706	 51.26	0	846063..846419	+	118	192360555	rpsM	CJA_0721	-	ribosomal protein S13p/S18e
707	 51.77	0	846471..846866	+	131	192359683	rpsK	CJA_0722	-	ribosomal protein S11
708	 48.63	0	846882..847502	+	206	192359460	rpsD	CJA_0723	-	ribosomal protein S4
709	 50.05	0	847529..848515	+	328	192362391	rpoA	CJA_0724	-	DNA-directed RNA polymerase, alpha subunit
710	 52.63	0	848612..849010	+	132	192360936	rplQ	CJA_0725	-	ribosomal protein L17
711	 55.72	0	849122..851971	-	949	192360278	uvrA	CJA_0726	-	excinuclease ABC, A subunit
712	 55.85	0	852127..853578	+	483	192360662	-	CJA_0727	-	major facilitator family transporter
713	 53.39	0	853596..854303	+	235	192360087	ssb	CJA_0728	-	single-stranded DNA-binding protein
714	 52.07	0	854494..855534	+	346	192359715	-	CJA_0729	-	transcriptional regulator, LacI family
715	 54.26	0	855637..857184	-	515	192361748	-	CJA_0730	-	transporter, major facilitator family
716	 54.48	0	857232..859643	-	803	192361369	gla15	CJA_0731	-	glucan 1,4-alpha-glucosidase, putative, gla15A
717	 51.57	0	860170..861792	+	540	192362528	glu13A	CJA_0732	-	oligo-1,6-glucosidase, putative, glu13A
718	 46.37	-1	862198..865020	+	940	192360869	-	CJA_0733	-	TonB-dependent receptor
719	 39.76	-2	865096..865344	+	82	192361663	-	CJA_0734	-	tryptophan halogenase
720	 44.59	-1	865368..867215	+	615	192359172	amy13E	CJA_0735	-	alpha-amylase, putative, amy13E
721	 48.27	0	867278..869353	+	691	192360008	adg97B	CJA_0736	-	alpha-glucosidase, putative, adg97B
722	 49.24	0	869444..871354	+	636	192359891	amy13D	CJA_0737	-	alpha amylase, putative, amy13D
723	 37.50	-2	871525..871620	+	31	192361495	-	CJA_0738	-	hypothetical protein
724	 51.36	0	871692..872168	+	158	192362105	-	CJA_0739	-	Adenylate cyclase
725	 48.28	0	872240..872500	+	86	192359657	-	CJA_0740	-	predicted membrane protein
726	 49.60	0	872535..873284	-	249	192358867	-	CJA_0741	-	Sec-independent protein translocase TatC
727	 59.05	+1	873281..873766	-	161	192359979	-	CJA_0742	-	TatB
728	 50.00	0	873780..874067	-	95	192359122	-	CJA_0743	-	twin arginine-targeting protein translocase, TatA/E family
729	 50.74	0	874090..874428	-	112	192360158	-	CJA_0744	-	phosphoribosyl-ATP pyrophosphohydrolase
730	 52.49	0	874431..874811	-	126	192361358	hisIE	CJA_0745	-	bifunctional protein phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase
731	 58.85	+1	874836..875654	-	272	192362228	-	CJA_0746	-	oxidoreductase, aldo/keto reductase family
732	 59.86	+1	875654..876946	-	430	192359482	-	CJA_0747	-	oxidoreductase, FAD-binding
733	 55.98	0	877081..877950	+	289	192358864	-	CJA_0748	-	dTDP-4-rhamnose reductase-related protein
734	 55.78	0	878026..879237	-	403	192360198	fabB	CJA_0749	-	beta-ketoacyl-ACP synthase I
735	 56.38	0	879356..879880	-	174	192361076	fabA	CJA_0750	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA
736	 57.42	0	879990..880952	-	320	192361220	ispB	CJA_0751	-	octaprenyl-diphosphate synthase
737	 53.36	0	881148..881906	-	252	192358911	mtaA	CJA_0752	-	HetI
738	 53.21	0	882051..882548	+	165	192359861	-	CJA_0753	-	peptidyl-prolyl cis-trans isomerase, FkbP family
739	 52.48	0	882698..884974	+	758	192360747	-	CJA_0754	-	two-component hybrid sensor and regulator
740	 48.77	0	884959..887271	+	770	192361575	-	CJA_0755	-	TonB-dependent receptor
741	 50.06	0	887439..888281	+	280	192361091	-	CJA_0756	-	putative citrate synthase I
742	 49.83	0	888295..889155	+	286	192360316	-	CJA_0758	-	hypothetical protein
743	 53.84	0	889152..891755	-	867	192359514	-	CJA_0757	-	putative signal transduction protein
744	 55.44	0	891853..893625	-	590	192362487	-	CJA_0759	-	putative acetolactate synthase large subunit
745	 55.62	0	894135..896885	+	916	192360854	-	CJA_0760	-	hypothetical protein
746	 47.59	0	897040..898224	+	394	192360258	-	CJA_0761	-	transcriptional regulator, AraC family
747	 53.27	0	898266..899519	-	417	192360183	-	CJA_0762	-	Molybdopterin biosynthesis enzyme
748	 54.99	0	899813..901714	-	633	192362484	rpoD	CJA_0764	-	transcription initiation factor sigma 70
749	 58.03	+1	901780..903864	-	694	192361440	dnaG	CJA_0765	-	DNA primase
750	 55.96	0	903932..904426	-	164	192359799	-	CJA_0766	-	GatB/Yqey domain superfamily
751	 53.24	0	904491..904706	-	71	192359130	rpsU	CJA_0767	-	ribosomal protein S21
752	 56.75	0	904920..905948	+	342	192361453	gcp	CJA_0768	-	O-sialoglycoprotein endopeptidase
753	 54.40	0	905959..906333	+	124	192360870	folB	CJA_0769	-	dihydroneopterin aldolase
754	 49.71	0	906330..906848	+	172	192362205	folK-2	CJA_0770	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
755	 52.32	0	906894..907862	-	322	192361349	-	CJA_0771	-	putative magnesium and cobalt transport protein CorA
756	 55.56	0	907879..908625	-	248	192362180	-	CJA_0772	-	oxidoreductase, short chain dehydrogenase/reductase family
757	 55.53	0	908648..909967	-	439	192361371	cca	CJA_0773	-	tRNA nucleotidyltransferase
758	 49.76	0	910258..911280	+	340	192360017	-	CJA_0774	-	Integral membrane protein DUF6 domain protein
759	 45.20	-1	911510..912175	+	221	192359119	-	CJA_0775	-	hypothetical protein
760	 39.60	-2	912269..914359	+	696	192359532	-	CJA_0776	-	hypothetical protein
761	 55.11	0	915128..916174	+	348	192360705	-	CJA_0777	-	UDP-glucose 4-epimerase
762	 57.17	0	916572..919772	+	1066	192361222	cbp32A	CJA_0778	-	carbohydrate binding protein, putative, cbp32A
763	 49.71	0	919862..920551	-	229	192360494	-	CJA_0779	-	hypothetical protein
764	 47.14	0	920545..921696	+	383	192361576	-	CJA_0780	-	ISCja2, transposase
765	 57.67	+1	922327..923715	-	462	192362360	phoQ	CJA_0781	-	Sensory transduction histidine kinase
766	 56.87	0	923718..924401	-	227	192359014	phoP	CJA_0782	-	DNA-binding response regulator
767	 57.38	0	924425..924844	-	139	192360100	-	CJA_0783	-	hypothetical protein
768	 60.85	+1	924915..925499	-	194	192360770	-	CJA_0784	-	hypothetical protein
769	 57.31	0	925770..927041	+	423	192361836	proA	CJA_0785	-	gamma-glutamyl phosphate reductase
770	 62.74	+1	927060..927695	+	211	192362352	nadD	CJA_0786	-	nicotinate (nicotinamide) nucleotide adenylyltransferase
771	 53.12	0	927723..928091	+	122	192359651	-	CJA_0787	-	iojap domain protein
772	 56.84	0	928179..928697	+	172	192360291	-	CJA_0788	-	conserved hypothetical protein TIGR00246
773	 56.04	0	928733..930736	+	667	192360908	mrdA-2	CJA_0789	-	penicillin-binding protein 2
774	 56.97	0	930733..931887	+	384	192361472	rodA	CJA_0790	-	rod shape-determining protein RodA
775	 51.85	0	931910..932908	+	332	192361833	plt103A	CJA_0791	-	peptidoglycan lytic transglycosylase, putative, plt103A
776	 53.97	0	932946..933827	+	293	192359125	-	CJA_0792	-	Six5
777	 52.87	0	933931..935148	+	405	192360123	-	CJA_0793	-	D-alanyl-D-alanine carboxypeptidase family
778	 52.89	0	935217..935804	-	195	192362288	-	CJA_0794	-	thioredoxin family protein
779	 55.68	0	935895..936167	+	90	192359538	-	CJA_0795	-	hypothetical protein
780	 56.64	0	936168..936815	+	215	192360649	lipB	CJA_0796	-	lipoate-protein ligase B
781	 54.78	0	936876..937910	+	344	192360748	lipA	CJA_0797	-	lipoic acid synthetase
782	 54.00	0	938052..938564	+	170	192361785	-	CJA_0798	-	putative acetyltransferase, GNAT family
783	 47.46	0	938950..942375	+	1141	192359097	gly43E	CJA_0799	-	beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43E
784	 46.46	-1	942508..945333	+	941	192360025	-	CJA_0800	-	putative TonB-dependent receptor
785	 51.92	0	945654..947375	+	573	192359190	-	CJA_0801	-	methyl-accepting chemotaxis protein
786	 48.98	0	947394..947687	+	97	192361696	-	CJA_0802	-	hypothetical protein
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.