IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
631	 49.16	0	768417..769673	-	418	192359261	-	CJA_0633	-	Piwi domain protein
632	 55.77	0	769670..771541	-	623	192360229	-	CJA_0635	-	hypothetical protein
633	 49.66	0	771596..773983	-	795	192361516	-	CJA_0636	-	type I restriction-modification system, S subunit
634	 55.05	0	773976..775034	-	352	192362336	rhuM	CJA_0637	-	RhuM-like protein
635	 54.31	0	775031..776503	-	490	192360754	hsdM	CJA_0638	-	type I restriction-modification system, M subunit
636	 51.61	0	776516..778906	-	796	192359896	-	CJA_0639	-	type I restriction-modification system, R subunit
637	 55.04	0	778979..779236	-	85	192362493	-	CJA_0640	-	hypothetical protein
638	 54.85	0	779435..780526	-	363	192362469	ychF	CJA_0641	-	GTP-binding protein YchF
639	 58.47	+1	780594..781337	-	247	192361428	pth	CJA_0642	-	peptidyl-tRNA hydrolase
640	 53.43	0	781312..781923	-	203	192359843	-	CJA_0643	-	ribosomal protein L25, Ctc-form
641	 57.43	0	782022..782963	-	313	192358855	prs	CJA_0644	-	ribose-phosphate pyrophosphokinase
642	 56.74	0	783295..784140	-	281	192362184	ispE	CJA_0646	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
643	 62.25	+1	784143..784754	-	203	192361569	lolB	CJA_0647	-	outer membrane lipoprotein LolB
644	 61.14	+1	784754..786580	-	608	192359864	-	CJA_0648	-	TPR domain protein
645	 55.56	0	786672..786770	+	32	192360846	-	CJA_0649	-	hypothetical protein
646	 62.45	+1	786858..787403	-	181	192360456	-	CJA_0650	-	hypothetical protein
647	 56.26	0	787459..788832	+	457	192359597	hemA	CJA_0651	-	glutamyl-tRNA reductase
648	 55.12	0	788829..789911	+	360	192360464	prfA	CJA_0652	-	peptide chain release factor 1
649	 58.65	+1	789968..790765	+	265	192359316	-	CJA_0653	-	methyltransferase, HemK family
650	 60.13	+1	790768..791532	+	254	192362250	moeB	CJA_0654	-	molybdopterin biosynthesis MoeB protein
651	 51.19	0	791683..793026	+	447	192361233	-	CJA_0655	-	hypothetical protein
652	 53.91	0	793051..794289	+	412	192361033	-	CJA_0656	-	peptidase, M48 family
653	 55.69	0	794363..795364	-	333	192359960	-	CJA_0657	-	kinase, pfkB family
654	 50.67	0	795357..795506	+	49	192359581	-	CJA_0658	-	hypothetical protein
655	 55.71	0	795529..797865	+	778	192361085	gt51C	CJA_0659	-	murein polymerase, putative, gt51C
656	 55.42	0	798035..798754	+	239	192359705	-	CJA_0660	-	hypothetical protein
657	 56.83	0	798759..799307	+	182	192360493	algT	CJA_0661	-	RNA polymerase ECF-type sigma factor
658	 48.97	0	799334..799672	+	112	192361600	-	CJA_0662	-	hypothetical protein
659	 51.88	0	799770..800222	-	150	192360450	-	CJA_0663	-	hypothetical protein
660	 52.84	0	800619..802433	+	604	192361818	ilvB	CJA_0664	-	acetolactate synthase, large subunit, biosynthetic type
661	 52.24	0	802435..802926	+	163	192360784	ilvN	CJA_0665	-	acetolactate synthase, small subunit
662	 54.26	0	802990..803553	+	187	192361063	-	CJA_0666	-	possible DNA-3-methyladenine glycosidase
663	 53.04	0	803554..804492	-	312	192359936	-	CJA_0667	-	LysR substrate binding domain protein
664	 51.82	0	804589..805605	+	338	192359381	ilvC	CJA_0668	-	ketol-acid reductoisomerase
665	 50.18	0	805687..806541	+	284	192360686	pssA	CJA_0669	-	phosphatidylserine synthase
666	 44.12	-1	812609..813748	+	379	192360177	alr	CJA_0676	-	alanine racemase
667	 46.97	0	813752..814756	+	334	192359865	-	CJA_0677	-	biotin-[acetyl-CoA-carboxylase] ligase
668	 48.48	0	814753..815511	+	252	192358841	-	CJA_0678	-	transcriptional activator, putative, Baf family
669	 43.73	-1	815517..816218	+	233	192361510	-	CJA_0679	-	Sporulation related repeat family
670	 54.17	0	816845..818068	+	407	192360445	-	CJA_0684	-	translation elongation factor Tu
671	 46.88	0	818209..818577	+	122	192360407	secE	CJA_0686	-	preprotein translocase, SecE subunit
672	 46.25	-1	818585..819118	+	177	192359543	nusG	CJA_0687	-	transcription termination/antitermination factor NusG
673	 50.23	0	819275..819706	+	143	192362091	rplK	CJA_0688	-	ribosomal protein L11
674	 48.71	0	819709..820404	+	231	192361282	rplA	CJA_0689	-	ribosomal protein L1
675	 53.94	0	820628..821122	+	164	192362406	-	CJA_0690	-	50S ribosomal protein L10
676	 44.72	-1	821189..821557	+	122	192359450	rplL	CJA_0691	-	ribosomal protein L7/L12
677	 50.61	0	821813..825898	+	1361	192360775	rpoB	CJA_0692	-	DNA-directed RNA polymerase, beta subunit
678	 52.93	0	825925..830241	+	1438	192361594	rpoC	CJA_0693	-	DNA-directed RNA polymerase, beta' subunit
679	 52.45	0	830509..830895	+	128	192359064	rpsL	CJA_0694	-	ribosomal protein S12
680	 51.38	0	831020..831490	+	156	192359877	rpsG	CJA_0695	-	ribosomal protein S7
681	 52.29	0	831568..833688	+	706	192361290	-	CJA_0696	-	translation elongation factor G
682	 54.17	0	833725..834948	+	407	192362181	-	CJA_0697	-	translation elongation factor Tu
683	 49.04	0	835167..835478	+	103	192359612	rpsJ	CJA_0698	-	ribosomal protein S10
684	 51.01	0	835577..836221	+	214	192360421	rplC	CJA_0699	-	ribosomal protein L3
685	 49.11	0	836242..836856	+	204	192359371	rplD	CJA_0700	-	ribosomal protein L4/L1 family
686	 46.46	-1	836853..837149	+	98	192360193	rplW	CJA_0701	-	ribosomal protein L23
687	 51.09	0	837163..837990	+	275	192359072	rplB	CJA_0702	-	ribosomal protein L2
688	 50.54	0	838025..838303	+	92	192359760	rpsS	CJA_0703	-	ribosomal protein S19
689	 48.65	0	838316..838648	+	110	192361611	rplV	CJA_0704	-	ribosomal protein L22
690	 50.37	0	838660..839340	+	226	192362436	rpsC	CJA_0705	-	ribosomal protein S3
691	 51.21	0	839353..839766	+	137	192360491	rplP	CJA_0706	-	ribosomal protein L16
692	 43.59	-1	839763..839957	+	64	192361324	rpmC	CJA_0707	-	ribosomal protein L29
693	 44.19	-1	839959..840225	+	88	192361056	rpsQ	CJA_0708	-	ribosomal protein S17
694	 47.97	0	840263..840631	+	122	192361879	rplN	CJA_0709	-	ribosomal protein L14
695	 44.65	-1	840666..840983	+	105	192361783	rplX	CJA_0710	-	ribosomal protein L24
696	 47.41	0	840990..841529	+	179	192359103	rplE	CJA_0711	-	50S ribosomal protein L5
697	 50.98	0	841540..841845	+	101	192360599	rpsN	CJA_0712	-	ribosomal protein S14p/S29e
698	 48.09	0	841876..842268	+	130	192359508	rpsH	CJA_0713	-	ribosomal protein S8
699	 48.50	0	842282..842815	+	177	192360852	rplF	CJA_0714	-	50S ribosomal protein L6
700	 51.57	0	842825..843175	+	116	192359756	rplR	CJA_0715	-	ribosomal protein L18
701	 47.76	0	843185..843697	+	170	192359431	rpsE	CJA_0716	-	ribosomal protein S5
702	 46.88	0	843727..843918	+	63	192360262	rpmD	CJA_0717	-	ribosomal protein L30
703	 49.66	0	843920..844354	+	144	192361117	rplO	CJA_0718	-	ribosomal protein L15
704	 47.01	0	844365..845702	+	445	192361952	-	CJA_0719	-	preprotein translocase, SecY subunit
705	 47.01	0	845725..845841	+	38	192360307	-	CJA_0720	-	ribosomal protein L36
706	 51.26	0	846063..846419	+	118	192360555	rpsM	CJA_0721	-	ribosomal protein S13p/S18e
707	 51.77	0	846471..846866	+	131	192359683	rpsK	CJA_0722	-	ribosomal protein S11
708	 48.63	0	846882..847502	+	206	192359460	rpsD	CJA_0723	-	ribosomal protein S4
709	 50.05	0	847529..848515	+	328	192362391	rpoA	CJA_0724	-	DNA-directed RNA polymerase, alpha subunit
710	 52.63	0	848612..849010	+	132	192360936	rplQ	CJA_0725	-	ribosomal protein L17
711	 55.72	0	849122..851971	-	949	192360278	uvrA	CJA_0726	-	excinuclease ABC, A subunit
712	 55.85	0	852127..853578	+	483	192360662	-	CJA_0727	-	major facilitator family transporter
713	 53.39	0	853596..854303	+	235	192360087	ssb	CJA_0728	-	single-stranded DNA-binding protein
714	 52.07	0	854494..855534	+	346	192359715	-	CJA_0729	-	transcriptional regulator, LacI family
715	 54.26	0	855637..857184	-	515	192361748	-	CJA_0730	-	transporter, major facilitator family
716	 54.48	0	857232..859643	-	803	192361369	gla15	CJA_0731	-	glucan 1,4-alpha-glucosidase, putative, gla15A
717	 51.57	0	860170..861792	+	540	192362528	glu13A	CJA_0732	-	oligo-1,6-glucosidase, putative, glu13A
718	 46.37	-1	862198..865020	+	940	192360869	-	CJA_0733	-	TonB-dependent receptor
719	 39.76	-2	865096..865344	+	82	192361663	-	CJA_0734	-	tryptophan halogenase
720	 44.59	-1	865368..867215	+	615	192359172	amy13E	CJA_0735	-	alpha-amylase, putative, amy13E
721	 48.27	0	867278..869353	+	691	192360008	adg97B	CJA_0736	-	alpha-glucosidase, putative, adg97B
722	 49.24	0	869444..871354	+	636	192359891	amy13D	CJA_0737	-	alpha amylase, putative, amy13D
723	 37.50	-2	871525..871620	+	31	192361495	-	CJA_0738	-	hypothetical protein
724	 51.36	0	871692..872168	+	158	192362105	-	CJA_0739	-	Adenylate cyclase
725	 48.28	0	872240..872500	+	86	192359657	-	CJA_0740	-	predicted membrane protein
726	 49.60	0	872535..873284	-	249	192358867	-	CJA_0741	-	Sec-independent protein translocase TatC
727	 59.05	+1	873281..873766	-	161	192359979	-	CJA_0742	-	TatB
728	 50.00	0	873780..874067	-	95	192359122	-	CJA_0743	-	twin arginine-targeting protein translocase, TatA/E family
729	 50.74	0	874090..874428	-	112	192360158	-	CJA_0744	-	phosphoribosyl-ATP pyrophosphohydrolase
730	 52.49	0	874431..874811	-	126	192361358	hisIE	CJA_0745	-	bifunctional protein phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.