IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
541	 57.21	0	660769..661836	-	355	192361028	-	CJA_0542	-	bmp family protein
542	 63.32	+2	661863..662789	-	308	192360725	-	CJA_0543	-	ABC transporter, permease protein
543	 59.62	+1	662793..663884	-	363	192359902	-	CJA_0544	-	permease protein of sugar ABC transporter
544	 62.70	+1	663874..665511	-	545	192359152	-	CJA_0545	-	ABC transporter, ATP-binding protein
545	 63.22	+2	665734..667212	+	492	192362126	xdhA	CJA_0546	-	xanthine dehydrogenase, XdhA subunit
546	 57.80	+1	667205..669562	+	785	192360209	xdhB	CJA_0547	-	xanthine dehydrogenase
547	 57.53	+1	669528..670457	+	309	192361543	-	CJA_0548	-	putative xanthine dehydrogenase accessory factor XdhC
548	 56.63	0	670503..671000	+	165	192360607	-	CJA_0549	-	hypothetical protein
549	 54.13	0	671012..671362	+	116	192359454	-	CJA_0550	-	Transthyretin-like protein precursor
550	 56.28	0	671389..672726	+	445	192362432	-	CJA_0551	-	guanine aminohydrolase
551	 53.25	0	672714..673958	+	414	192361554	-	CJA_0552	-	hypothetical protein
552	 57.76	+1	673960..674262	+	100	192359823	-	CJA_0553	-	hypothetical protein
553	 49.64	0	674427..674837	+	136	192358926	-	CJA_0554	-	hypothetical protein
554	 48.28	0	675057..675899	-	280	192358908	-	CJA_0555	-	transposase
555	 44.81	-1	675896..676165	-	89	192362085	-	CJA_0556	-	transposase
556	 25.56	-2	676643..677041	-	132	192360275	-	CJA_0557	-	hypothetical protein
557	 27.69	-2	678420..678791	-	123	192360059	-	CJA_0558	-	hypothetical protein
558	 46.88	0	678798..685997	-	2399	192360341	cbp35B	CJA_0559	-	carbohydrate binding protein, putative, cbp35B
559	 51.54	0	686290..688596	-	768	192361212	-	CJA_0560	-	outer membrane ferric siderophore receptor
560	 58.42	+1	688838..689734	-	298	192361616	pda4B	CJA_0561	-	polysaccharide deacetylase protein, putative, pda4B
561	 39.53	-2	689744..689872	-	42	192359595	-	CJA_0562	-	hypothetical protein
562	 51.84	0	690059..691582	+	507	192361216	-	CJA_0563	-	putative adenosine deaminase
563	 33.33	-2	691593..691739	+	48	192359206	-	CJA_0564	-	hypothetical protein
564	 50.58	0	691864..694281	+	805	192359641	-	CJA_0565	-	putative TonB-dependent receptor
565	 52.78	0	694354..695109	+	251	192360467	-	CJA_0566	-	hypothetical protein
566	 54.03	0	695122..696498	+	458	192360816	-	CJA_0567	-	TolR
567	 54.58	0	696516..697028	+	170	192360920	-	CJA_0568	-	TonB system transport protein ExbB2
568	 51.23	0	697112..697519	+	135	192361613	-	CJA_0569	-	TonB system transport protein ExbD2
569	 57.19	0	697519..698151	+	210	192358877	-	CJA_0570	-	TonB2 protein
570	 53.07	0	698187..699488	+	433	192360060	-	CJA_0571	-	tetratricopeptide repeat domain protein
571	 53.07	0	699523..700449	+	308	192362351	-	CJA_0572	-	methylthioadenosine phosphorylase
572	 54.77	0	700449..701549	+	366	192361060	-	CJA_0573	-	putative purine nucleoside permease
573	 59.73	+1	701625..702806	+	393	192360244	-	CJA_0574	-	amidase
574	 60.06	+1	702806..704395	+	529	192358880	-	CJA_0575	-	gamma-glutamyltranspeptidase
575	 58.45	+1	704388..705215	+	275	192361859	-	CJA_0576	-	hypothetical integral membrane protein
576	 59.94	+1	705255..706517	+	420	192362459	pucG	CJA_0577	-	purine catabolism protein
577	 56.37	0	706529..707596	+	355	192359911	-	CJA_0578	-	adenosine deaminase
578	 55.56	0	707680..708993	+	437	192359335	amaB	CJA_0579	-	N-carbamoyl-L-amino acid hydrolase
579	 52.82	0	709015..709599	+	194	192362061	hpt-1	CJA_0580	-	hypoxanthine-guanine phosphoribosyltransferase
580	 54.76	0	709927..710346	-	139	192360347	-	CJA_0581	-	hypothetical protein
581	 48.15	0	710445..710633	-	62	192359455	-	CJA_0582	-	hypothetical protein
582	 55.17	0	710633..711676	-	347	192358796	-	CJA_0583	-	putative purine nucleoside permease
583	 48.22	0	711829..712842	-	337	192359914	-	CJA_0584	-	adenosine deaminase
584	 42.86	-1	712875..712979	+	34	192358945	-	CJA_0585	-	hypothetical protein
585	 51.64	0	713510..715372	+	620	192362133	-	CJA_0587	-	hypothetical protein
586	 49.52	0	715626..716045	+	139	192360083	-	CJA_0588	-	hypothetical protein
587	 56.99	0	716124..727181	-	3685	192360952	-	CJA_0589	-	Putative Ig domain family
588	 46.62	-1	727182..728069	-	295	192361751	-	CJA_0590	-	Sulfotransferase domain superfamily
589	 43.59	-1	728304..728459	+	51	192358805	-	CJA_0591	-	hypothetical protein
590	 51.52	0	728616..729143	-	175	192360554	-	CJA_0592	-	microcystin dependent protein; MdpB
591	 52.68	0	729154..729675	-	173	192361392	-	CJA_0593	-	microcystin dependent protein; MdpB
592	 48.36	0	729688..730419	-	243	192360659	-	CJA_0594	-	hypothetical protein
593	 39.30	-2	730292..730576	-	94	192361292	-	CJA_0595	-	hypothetical protein
594	 47.25	0	730801..731310	-	169	192358990	-	CJA_0596	-	acetyltransferase, GNAT family
595	 47.62	0	731532..732308	+	258	192359479	-	CJA_0597	-	hypothetical protein
596	 51.61	0	732525..733394	+	289	192362317	-	CJA_0598	-	GumN protein superfamily
597	 53.54	0	733414..734289	+	291	192361249	-	CJA_0599	-	ABC transporter, ATP-binding protein
598	 52.26	0	734286..735659	+	457	192359165	-	CJA_0600	-	hypothetical protein
599	 56.17	0	735662..736042	+	126	192361862	-	CJA_0601	-	transcriptional regulator, GntR family
600	 55.21	0	736149..737597	+	482	192360829	-	CJA_0602	-	hydrolase, alpha/beta fold family domain protein
601	 53.78	0	737594..738361	+	255	192360469	natA	CJA_0603	-	sodium ABC transporter ATP-binding protein
602	 51.97	0	738348..739538	+	396	192360837	-	CJA_0604	-	ABC-2 type transporter
603	 52.23	0	739583..740143	-	186	192360002	-	CJA_0605	-	hypothetical protein
604	 52.62	0	740170..740646	-	158	192359131	-	CJA_0606	-	hypothetical protein
605	 56.75	0	740903..741265	+	120	192359810	-	CJA_0607	-	hypothetical protein
606	 46.39	-1	741344..741856	+	170	192361109	-	CJA_0608	-	putative lipoprotein
607	 48.05	0	741909..742241	-	110	192361920	-	CJA_0609	-	hypothetical protein
608	 55.03	0	742724..744115	+	463	192361544	cpsA	CJA_0610	-	capsular polysaccharide biosynthesis protein
609	 55.84	0	744158..745312	+	384	192362366	-	CJA_0611	-	hypothetical protein
610	 56.66	0	745364..746572	+	402	192358960	-	CJA_0612	-	hypothetical protein
611	 48.91	0	746668..747489	+	273	192359822	-	CJA_0613	-	hypothetical protein
612	 53.65	0	747542..748294	+	250	192360086	gt25A	CJA_0614	-	glycosyl transferase, putative, gt25A
613	 56.98	0	748332..749921	-	529	192360911	-	CJA_0615	-	hypothetical protein
614	 57.96	+1	749819..750898	-	359	192359403	gt4J-1	CJA_0616	-	glycosyl transferase, putative, gt4J
615	 62.50	+1	750901..751644	-	247	192359339	gt26A	CJA_0617	-	glycosyl transferase, putative, gt26A
616	 61.21	+1	751641..752813	-	390	192361073	gt70A	CJA_0618	-	UDP-GlcA beta-glucuronosyltransferase, putative, gt70A
617	 62.96	+2	752845..753897	-	350	192360145	cel5H	CJA_0619	-	endo-1,4-beta glucanase, putative, cel5H
618	 62.13	+1	753894..755018	-	374	192362446	gt4J-2	CJA_0620	-	glycosyl transferase, putative, gt4J
619	 62.69	+1	755021..756301	-	426	192361422	-	CJA_0621	-	putative GumE protein
620	 66.12	+2	756327..757244	-	305	192360402	epsG	CJA_0622	-	EpsG
621	 60.53	+1	757284..758636	-	450	192359319	-	CJA_0623	-	putative chain length determinant protein EpsF
622	 62.01	+1	758682..759497	-	271	192362006	epsE	CJA_0624	-	EpsE
623	 47.75	0	759521..759631	+	36	192360694	-	CJA_0625	-	hypothetical protein
624	 57.81	+1	760137..761423	+	428	192361288	aroA	CJA_0627	-	3-phosphoshikimate 1-carboxyvinyltransferase
625	 52.38	0	761423..761842	+	139	192362303	-	CJA_0628	-	thioesterase family protein domain protein
626	 45.86	-1	762136..762678	+	180	192358953	-	CJA_0629	-	PEP-CTERM putative exosortase interaction domain protein
627	 52.68	0	762865..763536	-	223	192360159	-	CJA_0630	-	hypothetical protein
628	 51.13	0	763689..764576	-	295	192361789	-	CJA_0631	-	Domain of unknown function (306) family
629	 49.13	0	764567..766402	+	611	192362483	-	CJA_0632	-	putative DNA helicase II
630	 47.22	0	767378..768529	+	383	192360303	-	CJA_0634	-	ISCja2, transposase
631	 49.16	0	768417..769673	-	418	192359261	-	CJA_0633	-	Piwi domain protein
632	 55.77	0	769670..771541	-	623	192360229	-	CJA_0635	-	hypothetical protein
633	 49.66	0	771596..773983	-	795	192361516	-	CJA_0636	-	type I restriction-modification system, S subunit
634	 55.05	0	773976..775034	-	352	192362336	rhuM	CJA_0637	-	RhuM-like protein
635	 54.31	0	775031..776503	-	490	192360754	hsdM	CJA_0638	-	type I restriction-modification system, M subunit
636	 51.61	0	776516..778906	-	796	192359896	-	CJA_0639	-	type I restriction-modification system, R subunit
637	 55.04	0	778979..779236	-	85	192362493	-	CJA_0640	-	hypothetical protein
638	 54.85	0	779435..780526	-	363	192362469	ychF	CJA_0641	-	GTP-binding protein YchF
639	 58.47	+1	780594..781337	-	247	192361428	pth	CJA_0642	-	peptidyl-tRNA hydrolase
640	 53.43	0	781312..781923	-	203	192359843	-	CJA_0643	-	ribosomal protein L25, Ctc-form
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.