IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
454	 57.14	0	559325..559660	+	111	192361754	-	CJA_0455	-	hypothetical protein
455	 56.38	0	559837..560769	+	310	192361132	-	CJA_0456	-	endo-1,4-beta-xylanase B
456	 55.68	0	560863..563010	-	715	192360859	aquI	CJA_0457	-	aqualysin precursor
457	 50.00	0	563502..563819	+	105	192361653	rplU	CJA_0458	-	ribosomal protein L21
458	 52.33	0	563834..564091	+	85	192359608	rpmA	CJA_0459	-	ribosomal protein L27
459	 52.72	0	564229..565425	+	398	192360477	-	CJA_0460	-	GTP1/OBG family
460	 52.72	0	565447..566586	+	379	192360112	proB	CJA_0461	-	glutamate 5-kinase
461	 47.12	0	566653..568611	-	652	192360996	-	CJA_0462	-	hypothetical protein
462	 54.31	0	568838..570148	+	436	192360476	-	CJA_0463	-	putative lipoprotein
463	 54.28	0	570173..570826	-	217	192359639	-	CJA_0464	-	HAD-superfamily subfamily IB hydrolase, TIGR01490
464	 53.02	0	571035..571547	+	170	192361133	-	CJA_0465	-	hydrolase, NUDIX family
465	 54.38	0	571587..573857	+	756	192359797	-	CJA_0466	-	phosphoenolpyruvate-protein phosphotransferase PtsP
466	 52.03	0	573924..574784	+	286	192359062	lgt	CJA_0467	-	prolipoprotein diacylglyceryl transferase
467	 49.59	0	574820..575668	+	282	192362015	thyA	CJA_0468	-	thymidylate synthase
468	 52.52	0	575690..576205	+	171	192360867	folA	CJA_0469	-	dihydrofolate reductase
469	 48.25	0	576442..576555	+	37	192361493	-	CJA_0470	-	hypothetical protein
470	 46.05	-1	576563..577270	+	235	192360297	-	CJA_0471	-	hypothetical protein
471	 49.82	0	577267..578649	+	460	192362143	-	CJA_0472	-	MotA/TolQ/ExbB proton channel family protein
472	 49.43	0	578662..579189	+	175	192361298	-	CJA_0473	-	TonB system transport protein ExbB2
473	 48.64	0	579234..579638	+	134	192360013	-	CJA_0474	-	TonB system transport protein ExbD2
474	 47.78	0	579644..580273	+	209	192359183	-	CJA_0475	-	putative tonB2 protein
475	 46.42	-1	580285..581667	+	460	192361018	-	CJA_0476	-	TPR domain protein
476	 56.15	0	581824..583668	-	614	192359754	ilvD	CJA_0477	-	dihydroxy-acid dehydratase
477	 53.85	0	583801..584268	-	155	192358922	-	CJA_0478	-	acetyltransferase, GNAT family
478	 52.45	0	584265..585593	-	442	192361856	argA	CJA_0479	-	amino-acid N-acetyltransferase
479	 55.76	0	585620..586774	-	384	192359436	argE	CJA_0480	-	acetylornithine deacetylase (ArgE)
480	 55.84	0	586912..588186	-	424	192360268	-	CJA_0481	-	pho4 family protein
481	 54.87	0	588212..588889	-	225	192361089	-	CJA_0482	-	conserved hypothetical protein TIGR00153
482	 58.17	+1	589058..590857	+	599	192362172	-	CJA_0483	-	type IV pilus biogenesis protein
483	 58.04	+1	590945..591628	+	227	192361793	-	CJA_0484	-	putative glutathione S-transferase
484	 52.38	0	591691..591900	+	69	192361559	-	CJA_0485	-	twin arginine-targeting protein translocase, TatA/E family
485	 56.45	0	592119..592676	-	185	192360218	-	CJA_0486	-	PEP-CTERM putative exosortase interaction domain protein
486	 60.30	+1	592703..594100	-	465	192359402	-	CJA_0487	-	Tat (twin-arginine translocation) pathway signal sequence domain protein
487	 53.31	0	594225..595040	-	271	192362003	-	CJA_0488	-	Sec-independent protein translocase TatC
488	 60.61	+1	595045..595440	-	131	192359993	-	CJA_0489	-	TatB
489	 55.71	0	595510..596376	-	288	192361530	-	CJA_0490	-	hypothetical protein
490	 56.31	0	596606..597619	+	337	192361668	gal53A-1	CJA_0491	-	arabinogalactan endo-1,4-beta-galactosidase, putative, gal53A
491	 55.72	0	597653..598894	+	413	192362235	gal53B	CJA_0492	-	arabinogalactan endo-1,4-beta-galactosidase, putative, gal53B
492	 41.94	-1	598910..599002	+	30	192361239	-	CJA_0493	-	hypothetical protein
493	 49.99	0	599129..606433	+	2434	192360559	cbp35C	CJA_0494	-	carbohydrate binding protein, cbp35C
494	 51.28	0	606961..607857	-	298	192359480	-	CJA_0495	-	hypothetical protein
495	 54.65	0	608083..610437	-	784	192360653	bgl2A	CJA_0496	-	beta-galactosidase, putative, bgl2A
496	 51.37	0	610492..611622	-	376	192360044	gal53A-2	CJA_0497	-	Arabinogalactan endo-1,4-beta-galactosidase gal53A
497	 56.03	0	611718..614444	-	908	192360944	-	CJA_0498	-	putative TonB-dependent receptor
498	 42.86	-1	614495..614599	+	34	192360122	-	CJA_0499	-	hypothetical protein
499	 59.72	+1	614655..617621	+	988	192359114	glnE	CJA_0500	-	glutamate-ammonia-ligase adenylyltransferase
500	 57.10	0	617648..618577	+	309	192361791	ilvE	CJA_0501	-	branched-chain amino acid aminotransferase
501	 61.05	+1	618658..619725	+	355	192360592	gt9A	CJA_0502	-	glycosyl transferase, putative, gt9A
502	 60.28	+1	619746..620591	+	281	192359507	waaP	CJA_0503	-	lipopolysaccharide core biosynthesis protein WaaP
503	 61.63	+1	620588..621718	+	376	192362277	gt4E	CJA_0504	-	glycosyl transferase, putative, gt4E
504	 59.24	+1	621728..622912	+	394	192360153	-	CJA_0505	-	O-antigen polymerase family protein
505	 58.49	+1	622897..624021	+	374	192361230	gt4D	CJA_0506	-	glycosyl transferase, putative, gt4D
506	 47.50	0	624014..624133	+	39	192362334	-	CJA_0507	-	hypothetical protein
507	 52.90	0	624123..625895	+	590	192359291	msbA	CJA_0508	-	lipid A export permease/ATP-binding protein MsbA
508	 55.11	0	625951..627387	+	478	192362253	rfaE	CJA_0509	-	LPS biosynthesis protein RfaE
509	 52.13	0	627350..627982	+	210	192361578	-	CJA_0510	-	methyl-accepting chemotaxis protein
510	 57.88	+1	627988..628704	+	238	192359886	-	CJA_0511	-	methyl-accepting chemotaxis protein
511	 57.11	0	628635..629042	+	135	192358844	-	CJA_0512	-	methyl-accepting chemotaxis transducer
512	 55.84	0	629086..630240	-	384	192362053	-	CJA_0513	-	NADH-dependent butanol dehydrogenase
513	 49.52	0	630209..630313	-	34	192361015	-	CJA_0514	-	hypothetical protein
514	 54.24	0	630333..630686	-	117	192361159	-	CJA_0515	-	iron-sulfur cluster-binding protein, Rieske family
515	 59.85	+1	630683..631738	-	351	192360497	-	CJA_0516	-	hypothetical protein
516	 56.46	0	631770..632651	-	293	192359635	htpX	CJA_0517	-	heat shock protein HtpX
517	 58.65	+1	633064..633936	-	290	192360180	-	CJA_0518	-	cAMP-dependent protein kinase
518	 49.49	0	634050..634346	-	98	192360771	-	CJA_0519	-	TfoX C-terminal domain superfamily
519	 52.42	0	634569..635249	+	226	192360998	-	CJA_0520	-	D-alanyl-D-alanine carboxypeptidase
520	 59.02	+1	635271..636683	+	470	192362090	-	CJA_0521	-	transporter
521	 58.79	+1	636689..637501	+	270	192359599	-	CJA_0522	-	serine acetyltransferase
522	 55.42	0	637502..637741	-	79	192360379	-	CJA_0523	-	hypothetical protein
523	 56.41	0	637943..638683	+	246	192360581	-	CJA_0524	-	hypothetical protein
524	 50.49	0	638722..640878	+	718	192361323	-	CJA_0525	-	AsmA family superfamily
525	 31.18	-2	640975..641067	+	30	192358913	-	CJA_0527	-	hypothetical protein
526	 36.87	-2	641064..641261	-	65	192359759	-	CJA_0526	-	hypothetical protein
527	 57.19	0	642343..643218	-	291	192362345	-	CJA_0528	-	nitrate ABC transporter permease protein
528	 51.19	0	643231..644580	-	449	192360803	-	CJA_0529	-	nitrate-binding protein nrtA precursor, periplasmic
529	 61.20	+1	645033..646148	+	371	192360375	mutY	CJA_0530	-	A / G specific adenine glycosylase
530	 49.64	0	646152..646427	+	91	192359306	-	CJA_0531	-	hypothetical protein
531	 59.97	+1	646550..649342	+	930	192361307	bgl2B	CJA_0532	-	beta-galactosidase, putative, bgl2B
532	 52.27	0	649594..651288	+	564	192362110	pel1B	CJA_0533	-	pectate lyase, putative, pel1B
533	 60.37	+1	651388..651816	-	142	192358840	-	CJA_0534	-	Transcriptional regulator family
534	 56.79	0	651801..652823	+	340	192360630	-	CJA_0535	-	hypothetical protein
535	 57.43	0	652810..653448	+	212	192360933	-	CJA_0536	-	2-hydroxychromene-2-carboxylate isomerase family protein
536	 55.05	0	653515..656940	-	1141	192361810	choB	CJA_0537	-	cholesterol oxidase
537	 48.35	0	657048..657533	-	161	192361595	-	CJA_0538	-	hypothetical protein
538	 36.27	-2	657517..657618	+	33	192361657	-	CJA_0539	-	hypothetical protein
539	 59.49	+1	658519..659898	-	459	192362457	-	CJA_0540	-	hydroxydechloroatrazine ethylaminohydrolase
540	 52.07	0	659895..660620	-	241	192361854	-	CJA_0541	-	transcriptional regulator, TetR family
541	 57.21	0	660769..661836	-	355	192361028	-	CJA_0542	-	bmp family protein
542	 63.32	+2	661863..662789	-	308	192360725	-	CJA_0543	-	ABC transporter, permease protein
543	 59.62	+1	662793..663884	-	363	192359902	-	CJA_0544	-	permease protein of sugar ABC transporter
544	 62.70	+1	663874..665511	-	545	192359152	-	CJA_0545	-	ABC transporter, ATP-binding protein
545	 63.22	+2	665734..667212	+	492	192362126	xdhA	CJA_0546	-	xanthine dehydrogenase, XdhA subunit
546	 57.80	+1	667205..669562	+	785	192360209	xdhB	CJA_0547	-	xanthine dehydrogenase
547	 57.53	+1	669528..670457	+	309	192361543	-	CJA_0548	-	putative xanthine dehydrogenase accessory factor XdhC
548	 56.63	0	670503..671000	+	165	192360607	-	CJA_0549	-	hypothetical protein
549	 54.13	0	671012..671362	+	116	192359454	-	CJA_0550	-	Transthyretin-like protein precursor
550	 56.28	0	671389..672726	+	445	192362432	-	CJA_0551	-	guanine aminohydrolase
551	 53.25	0	672714..673958	+	414	192361554	-	CJA_0552	-	hypothetical protein
552	 57.76	+1	673960..674262	+	100	192359823	-	CJA_0553	-	hypothetical protein
553	 49.64	0	674427..674837	+	136	192358926	-	CJA_0554	-	hypothetical protein
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.