IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
410	 58.02	+1	507875..508765	+	296	192362505	-	CJA_0410	-	staphylococcal nuclease homolog
411	 54.12	0	508779..511241	-	820	192360194	gt51D	CJA_0411	-	murein polymerase, putative, gt51D
412	 50.56	0	511345..512412	+	355	192359466	pilM	CJA_0412	-	type IV pilus assembly protein PilM
413	 45.52	-1	512412..513002	+	196	192359164	pilN	CJA_0413	-	type 4 fimbrial biogenesis protein PilN
414	 43.73	-1	513002..513655	+	217	192362154	pilO	CJA_0414	-	pilO
415	 41.71	-1	513652..514176	+	174	192360736	pilP	CJA_0415	-	type IV pilus biogenesis protein PilP
416	 43.36	-1	514213..516357	+	714	192359937	-	CJA_0416	-	fimbrial assembly protein PilQ
417	 52.95	0	516358..516882	+	174	192361325	-	CJA_0417	-	shikimate kinase
418	 52.75	0	517026..518117	+	363	192360279	aroB	CJA_0418	-	3-dehydroquinate synthase
419	 55.92	0	518261..519805	+	514	192359671	-	CJA_0419	-	hypothetical protein
420	 54.71	0	519866..520258	-	130	192362429	gcvH	CJA_0420	-	glycine cleavage system H protein
421	 58.33	+1	520301..521416	-	371	192361648	gcvT	CJA_0421	-	glycine cleavage system T protein
422	 57.89	+1	521536..522105	-	189	192360890	-	CJA_0422	-	YbcL
423	 57.28	0	522133..523155	-	340	192359987	-	CJA_0423	-	hypothetical protein
424	 57.07	0	523152..524558	-	468	192359133	-	CJA_0424	-	trypsin domain protein
425	 62.45	+1	524652..525410	-	252	192361736	-	CJA_0425	-	competence protein ComF
426	 56.95	0	525588..526688	+	366	192360896	bioB	CJA_0426	-	biotin synthase
427	 61.35	+1	526721..527923	+	400	192360066	bioF	CJA_0427	-	8-amino-7-oxononanoate synthase
428	 59.77	+1	527916..529424	+	502	192359126	bioC	CJA_0428	-	biotin biosynthesis protein BioC
429	 62.45	+1	529444..530130	+	228	192362200	bioD	CJA_0429	-	dethiobiotin synthase
430	 56.94	0	530133..530831	+	232	192361335	-	CJA_0430	-	putative lipoprotein
431	 56.93	0	531004..531270	+	88	192361432	-	CJA_0431	-	Domain of unknown function (DUF1078) family
432	 62.67	+1	531284..532159	+	291	192360201	-	CJA_0432	-	srpA-related protein
433	 51.61	0	532489..533079	+	196	192362188	-	CJA_0434	-	Uncharacterized BCR, YhbC family
434	 52.50	0	533180..534661	+	493	192361293	nusA	CJA_0435	-	N utilization substance protein A
435	 54.85	0	534715..537507	+	930	192360932	infB	CJA_0436	-	translation initiation factor IF-2
436	 53.28	0	537609..538019	+	136	192359933	rbfA	CJA_0437	-	ribosome-binding factor A
437	 58.33	+1	538019..538978	+	319	192361348	truB	CJA_0438	-	tRNA pseudouridine synthase B
438	 51.85	0	539133..539402	+	89	192360136	rpsO	CJA_0439	-	ribosomal protein S15
439	 53.16	0	539639..541771	+	710	192359049	-	CJA_0440	-	polyribonucleotide nucleotidyltransferase
440	 49.20	0	541871..543439	-	522	192361912	-	CJA_0441	-	hypothetical protein
441	 49.77	0	543529..544824	-	431	192361597	-	CJA_0442	-	AmpG protein, beta-lactamase induction signal transducer
442	 51.50	0	545126..545659	-	177	192362399	ppa	CJA_0443	-	inorganic pyrophosphatase
443	 54.67	0	545752..546576	-	274	192359357	-	CJA_0444	-	FHA domain protein
444	 53.68	0	546664..547125	+	153	192360392	-	CJA_0445	-	Selenoprotein W-related family
445	 50.29	0	547268..549862	+	864	192361734	-	CJA_0446	-	hypothetical protein
446	 47.22	0	549917..551068	-	383	192359232	-	CJA_0447	-	ISCja2, transposase
447	 52.70	0	551202..552218	-	338	192359972	-	CJA_0448	-	hypothetical protein
448	 51.30	0	552226..552648	+	140	192360350	-	CJA_0449	-	hypothetical protein
449	 54.22	0	552921..553997	-	358	192361148	axe2C	CJA_0450	-	xylan esterase, putative, axe2C
450	 52.05	0	554068..554676	-	202	192361816	-	CJA_0451	-	mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase)
451	 53.43	0	554941..555990	-	349	192360566	holA	CJA_0452	-	DNA polymerase III, delta subunit
452	 50.09	0	555996..556532	-	178	192360006	-	CJA_0453	-	putative rare lipoprotein B precursor
453	 54.49	0	556577..559171	-	864	192359451	leuS	CJA_0454	-	leucyl-tRNA synthetase
454	 57.14	0	559325..559660	+	111	192361754	-	CJA_0455	-	hypothetical protein
455	 56.38	0	559837..560769	+	310	192361132	-	CJA_0456	-	endo-1,4-beta-xylanase B
456	 55.68	0	560863..563010	-	715	192360859	aquI	CJA_0457	-	aqualysin precursor
457	 50.00	0	563502..563819	+	105	192361653	rplU	CJA_0458	-	ribosomal protein L21
458	 52.33	0	563834..564091	+	85	192359608	rpmA	CJA_0459	-	ribosomal protein L27
459	 52.72	0	564229..565425	+	398	192360477	-	CJA_0460	-	GTP1/OBG family
460	 52.72	0	565447..566586	+	379	192360112	proB	CJA_0461	-	glutamate 5-kinase
461	 47.12	0	566653..568611	-	652	192360996	-	CJA_0462	-	hypothetical protein
462	 54.31	0	568838..570148	+	436	192360476	-	CJA_0463	-	putative lipoprotein
463	 54.28	0	570173..570826	-	217	192359639	-	CJA_0464	-	HAD-superfamily subfamily IB hydrolase, TIGR01490
464	 53.02	0	571035..571547	+	170	192361133	-	CJA_0465	-	hydrolase, NUDIX family
465	 54.38	0	571587..573857	+	756	192359797	-	CJA_0466	-	phosphoenolpyruvate-protein phosphotransferase PtsP
466	 52.03	0	573924..574784	+	286	192359062	lgt	CJA_0467	-	prolipoprotein diacylglyceryl transferase
467	 49.59	0	574820..575668	+	282	192362015	thyA	CJA_0468	-	thymidylate synthase
468	 52.52	0	575690..576205	+	171	192360867	folA	CJA_0469	-	dihydrofolate reductase
469	 48.25	0	576442..576555	+	37	192361493	-	CJA_0470	-	hypothetical protein
470	 46.05	-1	576563..577270	+	235	192360297	-	CJA_0471	-	hypothetical protein
471	 49.82	0	577267..578649	+	460	192362143	-	CJA_0472	-	MotA/TolQ/ExbB proton channel family protein
472	 49.43	0	578662..579189	+	175	192361298	-	CJA_0473	-	TonB system transport protein ExbB2
473	 48.64	0	579234..579638	+	134	192360013	-	CJA_0474	-	TonB system transport protein ExbD2
474	 47.78	0	579644..580273	+	209	192359183	-	CJA_0475	-	putative tonB2 protein
475	 46.42	-1	580285..581667	+	460	192361018	-	CJA_0476	-	TPR domain protein
476	 56.15	0	581824..583668	-	614	192359754	ilvD	CJA_0477	-	dihydroxy-acid dehydratase
477	 53.85	0	583801..584268	-	155	192358922	-	CJA_0478	-	acetyltransferase, GNAT family
478	 52.45	0	584265..585593	-	442	192361856	argA	CJA_0479	-	amino-acid N-acetyltransferase
479	 55.76	0	585620..586774	-	384	192359436	argE	CJA_0480	-	acetylornithine deacetylase (ArgE)
480	 55.84	0	586912..588186	-	424	192360268	-	CJA_0481	-	pho4 family protein
481	 54.87	0	588212..588889	-	225	192361089	-	CJA_0482	-	conserved hypothetical protein TIGR00153
482	 58.17	+1	589058..590857	+	599	192362172	-	CJA_0483	-	type IV pilus biogenesis protein
483	 58.04	+1	590945..591628	+	227	192361793	-	CJA_0484	-	putative glutathione S-transferase
484	 52.38	0	591691..591900	+	69	192361559	-	CJA_0485	-	twin arginine-targeting protein translocase, TatA/E family
485	 56.45	0	592119..592676	-	185	192360218	-	CJA_0486	-	PEP-CTERM putative exosortase interaction domain protein
486	 60.30	+1	592703..594100	-	465	192359402	-	CJA_0487	-	Tat (twin-arginine translocation) pathway signal sequence domain protein
487	 53.31	0	594225..595040	-	271	192362003	-	CJA_0488	-	Sec-independent protein translocase TatC
488	 60.61	+1	595045..595440	-	131	192359993	-	CJA_0489	-	TatB
489	 55.71	0	595510..596376	-	288	192361530	-	CJA_0490	-	hypothetical protein
490	 56.31	0	596606..597619	+	337	192361668	gal53A-1	CJA_0491	-	arabinogalactan endo-1,4-beta-galactosidase, putative, gal53A
491	 55.72	0	597653..598894	+	413	192362235	gal53B	CJA_0492	-	arabinogalactan endo-1,4-beta-galactosidase, putative, gal53B
492	 41.94	-1	598910..599002	+	30	192361239	-	CJA_0493	-	hypothetical protein
493	 49.99	0	599129..606433	+	2434	192360559	cbp35C	CJA_0494	-	carbohydrate binding protein, cbp35C
494	 51.28	0	606961..607857	-	298	192359480	-	CJA_0495	-	hypothetical protein
495	 54.65	0	608083..610437	-	784	192360653	bgl2A	CJA_0496	-	beta-galactosidase, putative, bgl2A
496	 51.37	0	610492..611622	-	376	192360044	gal53A-2	CJA_0497	-	Arabinogalactan endo-1,4-beta-galactosidase gal53A
497	 56.03	0	611718..614444	-	908	192360944	-	CJA_0498	-	putative TonB-dependent receptor
498	 42.86	-1	614495..614599	+	34	192360122	-	CJA_0499	-	hypothetical protein
499	 59.72	+1	614655..617621	+	988	192359114	glnE	CJA_0500	-	glutamate-ammonia-ligase adenylyltransferase
500	 57.10	0	617648..618577	+	309	192361791	ilvE	CJA_0501	-	branched-chain amino acid aminotransferase
501	 61.05	+1	618658..619725	+	355	192360592	gt9A	CJA_0502	-	glycosyl transferase, putative, gt9A
502	 60.28	+1	619746..620591	+	281	192359507	waaP	CJA_0503	-	lipopolysaccharide core biosynthesis protein WaaP
503	 61.63	+1	620588..621718	+	376	192362277	gt4E	CJA_0504	-	glycosyl transferase, putative, gt4E
504	 59.24	+1	621728..622912	+	394	192360153	-	CJA_0505	-	O-antigen polymerase family protein
505	 58.49	+1	622897..624021	+	374	192361230	gt4D	CJA_0506	-	glycosyl transferase, putative, gt4D
506	 47.50	0	624014..624133	+	39	192362334	-	CJA_0507	-	hypothetical protein
507	 52.90	0	624123..625895	+	590	192359291	msbA	CJA_0508	-	lipid A export permease/ATP-binding protein MsbA
508	 55.11	0	625951..627387	+	478	192362253	rfaE	CJA_0509	-	LPS biosynthesis protein RfaE
509	 52.13	0	627350..627982	+	210	192361578	-	CJA_0510	-	methyl-accepting chemotaxis protein
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.