IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
357	 55.21	0	447137..449092	-	651	192361693	gt2K	CJA_0357	-	glycosyl transferase, putative, gt2K
358	 56.20	0	449067..450710	-	547	192359654	mdoG	CJA_0358	-	periplasmic glucans biosynthesis protein MdoG
359	 51.99	0	451161..453572	+	803	192359994	mmoS	CJA_0359	-	MmoS
360	 49.16	0	453606..454022	+	138	192360857	trx	CJA_0360	-	thioredoxin
361	 50.79	0	454377..455636	+	419	192362115	rho	CJA_0361	-	transcription termination factor Rho
362	 53.64	0	455780..457261	+	493	192360093	ubiD	CJA_0362	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
363	 55.28	0	457279..457638	-	119	192361960	-	CJA_0363	-	hypothetical protein
364	 51.57	0	457664..457822	+	52	192360352	-	CJA_0365	-	hypothetical protein
365	 59.70	+1	457801..458604	-	267	192360967	-	CJA_0364	-	serine acetyltransferase
366	 41.70	-1	459060..459860	-	266	192359358	-	CJA_0366	-	hypothetical protein
367	 57.90	+1	460552..461532	-	326	192361615	-	CJA_0367	-	hypothetical protein
368	 51.85	0	461691..462500	+	269	192360294	-	CJA_0368	-	ATPase, ParA family
369	 56.67	0	462507..462986	+	159	192359449	-	CJA_0369	-	hypothetical protein
370	 50.92	0	463490..464842	-	450	192359148	-	CJA_0370	-	Fic family protein
371	 61.35	+1	464946..468029	-	1027	192361024	-	CJA_0371	-	RND efflux transporter, permease protein
372	 61.54	+1	468026..471109	-	1027	192360050	-	CJA_0372	-	RND transporter, Hydrophobe/Amphiphile Efflux family
373	 56.06	0	471125..472321	-	398	192360553	-	CJA_0373	-	HlyD family secretion protein
374	 55.40	0	472760..474295	+	511	192358845	cel45A	CJA_0374	-	cellulase, putative, cel45A
375	 50.00	0	474559..475122	+	187	192362524	ahpC	CJA_0375	-	AhpC
376	 52.48	0	475220..476770	+	516	192360995	ahpF	CJA_0376	-	AhpF
377	 48.30	0	476817..477845	-	342	192359916	-	CJA_0377	-	beta-1, 4-galactosyltransferase, putative, gt2a
378	 50.95	0	478085..478714	-	209	192361974	-	CJA_0378	-	Alpha/Beta hydrolase family of unknown function (DUF1234) family
379	 53.37	0	478871..479479	-	202	192360699	-	CJA_0379	-	probable homoserine/homoserine lactone efflux protein
380	 48.99	0	479611..479955	+	114	192360097	-	CJA_0380	-	hypothetical protein
381	 43.33	-1	479976..480125	-	49	192359226	-	CJA_0381	-	hypothetical protein
382	 51.52	0	480200..480331	+	43	192359158	-	CJA_0382	-	hypothetical protein
383	 55.56	0	480370..480837	+	155	192361177	-	CJA_0383	-	putative lipoprotein
384	 53.75	0	480900..482099	-	399	192360838	pel10C	CJA_0384	-	pectate lyase, putative, pel10C
385	 56.11	0	482279..483121	-	280	192359955	panB	CJA_0385	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
386	 53.36	0	483147..483830	-	227	192360781	-	CJA_0386	-	predicted deoxypurine kinase
387	 56.04	0	483844..484323	-	159	192360174	folK	CJA_0387	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
388	 58.15	+1	484320..485693	-	457	192359588	pcnB	CJA_0388	-	polynucleotide adenylyltransferase
389	 56.42	0	486530..487924	-	464	192361827	-	CJA_0389	-	galR two-component system response regulator
390	 57.47	0	488039..491008	-	989	192361250	galS	CJA_0390	-	galS His Kinase A (phosphoacceptor) domain
391	 50.82	0	491054..491236	-	60	192360386	-	CJA_0391	-	hypothetical protein
392	 61.77	+1	491267..492205	-	312	192362183	-	CJA_0392	-	glutamyl- and glutaminyl-tRNA synthetase
393	 54.00	0	492247..492783	-	178	192360114	-	CJA_0393	-	DnaK suppressor protein
394	 59.72	+1	493010..493714	+	234	192359224	sfsA	CJA_0395	-	sugar fermentation stimulation protein
395	 59.31	+1	493711..494634	-	307	192361743	-	CJA_0394	-	Permeases of the drug/metabolite transporter (DMT) superfamily
396	 56.24	0	494717..495253	-	178	192362330	-	CJA_0396	-	putative lipoprotein
397	 52.36	0	495470..496294	+	274	192361994	uppP	CJA_0397	-	undecaprenyl-diphosphatase UppP
398	 55.32	0	496406..498520	+	704	192360225	amy13F	CJA_0398	-	alpha amylase, putative, amy13F
399	 44.57	-1	498743..499009	+	88	192361283	-	CJA_0399	-	hypothetical protein
400	 53.33	0	499009..499548	+	179	192361524	-	CJA_0400	-	cytochrome b561 family protein
401	 52.19	0	499581..501404	-	607	192360335	-	CJA_0401	-	hypothetical protein
402	 52.60	0	501653..502036	-	127	192361448	-	CJA_0402	-	hypothetical protein
403	 35.00	-2	502148..502267	+	39	192361690	-	CJA_0403	-	hypothetical protein
404	 55.86	0	502284..503606	-	440	192359011	hslU	CJA_0404	-	heat shock protein HslVU, ATPase subunit HslU
405	 58.10	+1	503656..504180	-	174	192360997	-	CJA_0405	-	peptidase, T1 family superfamily
406	 57.38	0	504270..504818	-	182	192359465	-	CJA_0406	-	Sporulation related repeat family
407	 58.97	+1	504878..507073	-	731	192360263	priA	CJA_0407	-	primosomal protein N`
408	 56.27	0	507207..507485	+	92	192361356	hip	CJA_0408	-	High potential iron-sulfur protein (HiPIP)
409	 51.09	0	507595..507870	+	91	192361414	rpmE	CJA_0409	-	50S ribosomal subunit protein L31
410	 58.02	+1	507875..508765	+	296	192362505	-	CJA_0410	-	staphylococcal nuclease homolog
411	 54.12	0	508779..511241	-	820	192360194	gt51D	CJA_0411	-	murein polymerase, putative, gt51D
412	 50.56	0	511345..512412	+	355	192359466	pilM	CJA_0412	-	type IV pilus assembly protein PilM
413	 45.52	-1	512412..513002	+	196	192359164	pilN	CJA_0413	-	type 4 fimbrial biogenesis protein PilN
414	 43.73	-1	513002..513655	+	217	192362154	pilO	CJA_0414	-	pilO
415	 41.71	-1	513652..514176	+	174	192360736	pilP	CJA_0415	-	type IV pilus biogenesis protein PilP
416	 43.36	-1	514213..516357	+	714	192359937	-	CJA_0416	-	fimbrial assembly protein PilQ
417	 52.95	0	516358..516882	+	174	192361325	-	CJA_0417	-	shikimate kinase
418	 52.75	0	517026..518117	+	363	192360279	aroB	CJA_0418	-	3-dehydroquinate synthase
419	 55.92	0	518261..519805	+	514	192359671	-	CJA_0419	-	hypothetical protein
420	 54.71	0	519866..520258	-	130	192362429	gcvH	CJA_0420	-	glycine cleavage system H protein
421	 58.33	+1	520301..521416	-	371	192361648	gcvT	CJA_0421	-	glycine cleavage system T protein
422	 57.89	+1	521536..522105	-	189	192360890	-	CJA_0422	-	YbcL
423	 57.28	0	522133..523155	-	340	192359987	-	CJA_0423	-	hypothetical protein
424	 57.07	0	523152..524558	-	468	192359133	-	CJA_0424	-	trypsin domain protein
425	 62.45	+1	524652..525410	-	252	192361736	-	CJA_0425	-	competence protein ComF
426	 56.95	0	525588..526688	+	366	192360896	bioB	CJA_0426	-	biotin synthase
427	 61.35	+1	526721..527923	+	400	192360066	bioF	CJA_0427	-	8-amino-7-oxononanoate synthase
428	 59.77	+1	527916..529424	+	502	192359126	bioC	CJA_0428	-	biotin biosynthesis protein BioC
429	 62.45	+1	529444..530130	+	228	192362200	bioD	CJA_0429	-	dethiobiotin synthase
430	 56.94	0	530133..530831	+	232	192361335	-	CJA_0430	-	putative lipoprotein
431	 56.93	0	531004..531270	+	88	192361432	-	CJA_0431	-	Domain of unknown function (DUF1078) family
432	 62.67	+1	531284..532159	+	291	192360201	-	CJA_0432	-	srpA-related protein
433	 51.61	0	532489..533079	+	196	192362188	-	CJA_0434	-	Uncharacterized BCR, YhbC family
434	 52.50	0	533180..534661	+	493	192361293	nusA	CJA_0435	-	N utilization substance protein A
435	 54.85	0	534715..537507	+	930	192360932	infB	CJA_0436	-	translation initiation factor IF-2
436	 53.28	0	537609..538019	+	136	192359933	rbfA	CJA_0437	-	ribosome-binding factor A
437	 58.33	+1	538019..538978	+	319	192361348	truB	CJA_0438	-	tRNA pseudouridine synthase B
438	 51.85	0	539133..539402	+	89	192360136	rpsO	CJA_0439	-	ribosomal protein S15
439	 53.16	0	539639..541771	+	710	192359049	-	CJA_0440	-	polyribonucleotide nucleotidyltransferase
440	 49.20	0	541871..543439	-	522	192361912	-	CJA_0441	-	hypothetical protein
441	 49.77	0	543529..544824	-	431	192361597	-	CJA_0442	-	AmpG protein, beta-lactamase induction signal transducer
442	 51.50	0	545126..545659	-	177	192362399	ppa	CJA_0443	-	inorganic pyrophosphatase
443	 54.67	0	545752..546576	-	274	192359357	-	CJA_0444	-	FHA domain protein
444	 53.68	0	546664..547125	+	153	192360392	-	CJA_0445	-	Selenoprotein W-related family
445	 50.29	0	547268..549862	+	864	192361734	-	CJA_0446	-	hypothetical protein
446	 47.22	0	549917..551068	-	383	192359232	-	CJA_0447	-	ISCja2, transposase
447	 52.70	0	551202..552218	-	338	192359972	-	CJA_0448	-	hypothetical protein
448	 51.30	0	552226..552648	+	140	192360350	-	CJA_0449	-	hypothetical protein
449	 54.22	0	552921..553997	-	358	192361148	axe2C	CJA_0450	-	xylan esterase, putative, axe2C
450	 52.05	0	554068..554676	-	202	192361816	-	CJA_0451	-	mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase)
451	 53.43	0	554941..555990	-	349	192360566	holA	CJA_0452	-	DNA polymerase III, delta subunit
452	 50.09	0	555996..556532	-	178	192360006	-	CJA_0453	-	putative rare lipoprotein B precursor
453	 54.49	0	556577..559171	-	864	192359451	leuS	CJA_0454	-	leucyl-tRNA synthetase
454	 57.14	0	559325..559660	+	111	192361754	-	CJA_0455	-	hypothetical protein
455	 56.38	0	559837..560769	+	310	192361132	-	CJA_0456	-	endo-1,4-beta-xylanase B
456	 55.68	0	560863..563010	-	715	192360859	aquI	CJA_0457	-	aqualysin precursor
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.