IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3641	 52.38	0	4455596..4455763	+	55	192361704	-	CJA_3713	-	hypothetical protein
3642	 56.82	0	4455751..4457496	+	581	192361936	-	CJA_3714	-	sensory box protein
3643	 61.68	+1	4457507..4457947	-	146	192360850	-	CJA_3715	-	Bacterial Transmembrane Pair family
3644	 66.24	+2	4458099..4459037	+	312	192362129	-	CJA_3716	-	transcriptional regulator, LysR family
3645	 47.03	0	4459199..4459417	-	72	192361034	dam	CJA_3717	-	adenine-specific DNA methyltransferase
3646	 44.67	-1	4459500..4459790	+	96	192360472	-	CJA_3718	-	hypothetical protein
3647	 53.64	0	4459952..4460281	-	109	192359438	-	CJA_3719	-	hypothetical protein
3648	 52.02	0	4460413..4460808	+	131	192361971	mrfJ	CJA_3720	-	MrfJ protein
3649	 55.82	0	4460817..4461323	+	168	192361139	-	CJA_3721	-	methylated-DNA-[protein]-cysteine S-methyltransferase
3650	 56.52	0	4461342..4463450	-	702	192359624	-	CJA_3722	-	TonB-dependent ferric achromobactin receptor
3651	 55.22	0	4463559..4463759	-	66	192358824	-	CJA_3723	-	hypothetical protein
3652	 51.40	0	4463970..4465286	+	438	192361309	-	CJA_3724	-	hypothetical protein
3653	 50.50	0	4465312..4465614	-	100	192360446	-	CJA_3725	-	Plasmid stabilization system protein
3654	 47.54	0	4465602..4465946	-	114	192361266	-	CJA_3726	-	Antitoxin of toxin-antitoxin stability system
3655	 56.84	0	4466002..4466235	-	77	192360922	-	CJA_3727	-	hypothetical protein
3656	 34.99	-2	4467064..4468329	-	421	192359633	-	CJA_3728	-	hypothetical protein
3657	 32.81	-2	4468461..4470578	-	705	192362132	-	CJA_3729	-	UvrD/REP helicase
3658	 33.73	-2	4470565..4472817	-	750	192361424	-	CJA_3730	-	hypothetical protein
3659	 50.46	0	4472910..4473668	-	252	192359847	-	CJA_3731	-	hypothetical protein
3660	 44.81	-1	4473975..4474697	+	240	192362011	-	CJA_3733	-	hypothetical protein
3661	 50.00	0	4474113..4474250	-	45	192358894	-	CJA_3732	-	hypothetical protein
3662	 60.28	+1	4474725..4475585	-	286	192360980	-	CJA_3734	-	ISCja1, transposase orfB
3663	 57.67	+1	4475582..4475881	-	99	192359281	-	CJA_3735	-	ISCja1, transposase orfA
3664	 46.15	-1	4476026..4476883	+	285	192360661	-	CJA_3736	-	hypothetical protein
3665	 62.42	+1	4476979..4477896	-	305	192360103	-	CJA_3737	-	putative pyridine nucleotide-disulphide oxidoreductase
3666	 61.68	+1	4477902..4478402	-	166	192360374	-	CJA_3738	-	Transcriptional regulator family
3667	 52.46	0	4478509..4478853	+	114	192359191	-	CJA_3739	-	Transcriptional regulator
3668	 56.70	0	4478850..4480133	+	427	192361710	-	CJA_3740	-	hypothetical protein
3669	 65.55	+2	4480147..4480683	-	178	192360891	-	CJA_3741	-	hypothetical protein
3670	 63.19	+2	4480746..4481090	-	114	192361485	-	CJA_3742	-	transcriptional regulatory protein
3671	 57.14	0	4481283..4482290	+	335	192360594	lipP	CJA_3743	-	lipase
3672	 59.47	+1	4482320..4483222	-	300	192359439	-	CJA_3744	-	transcriptional regulator
3673	 57.94	+1	4483340..4484095	+	251	192361919	-	CJA_3745	-	reductase
3674	 56.69	0	4484123..4484944	-	273	192361215	-	CJA_3746	-	transcriptional regulator, LuxR family
3675	 53.05	0	4485142..4486074	+	310	192362309	-	CJA_3747	-	Chitosanase Csn46F
3676	 30.39	-2	4486055..4486258	+	67	192359264	-	CJA_3748	-	hypothetical protein
3677	 48.23	0	4486872..4487945	+	357	192360602	-	CJA_3749	-	hypothetical protein
3678	 51.81	0	4488044..4490674	+	876	192361397	-	CJA_3750	-	aminotransferase
3679	 49.83	0	4490761..4492275	+	504	192361913	-	CJA_3751	-	hypothetical protein
3680	 54.80	0	4492314..4493678	+	454	192358955	-	CJA_3752	-	FAD binding domain protein
3681	 51.83	0	4493750..4496323	+	857	192359283	-	CJA_3753	-	putative transporter
3682	 57.19	0	4496369..4498162	+	597	192361101	-	CJA_3754	-	Choline/Carnitine o-acyltransferase superfamily
3683	 59.60	+1	4498159..4499502	+	447	192361421	-	CJA_3755	-	probable FMN oxidoreductase
3684	 56.72	0	4499503..4500819	+	438	192360414	-	CJA_3756	-	hypothetical protein
3685	 55.27	0	4500823..4501647	+	274	192361467	-	CJA_3757	-	short-chain dehydrogenase
3686	 53.36	0	4501658..4502950	+	430	192362522	-	CJA_3758	-	hypothetical protein
3687	 48.10	0	4502973..4503812	+	279	192358838	-	CJA_3759	-	hypothetical protein
3688	 52.01	0	4503820..4504617	-	265	192361430	-	CJA_3760	-	putative arylamine N-acetyltransferase
3689	 53.01	0	4504693..4505622	-	309	192360950	-	CJA_3761	-	hypothetical protein
3690	 52.61	0	4505762..4506835	-	357	192361681	xyn11B	CJA_3762	-	endo-1,4-beta-xylanase, xyn11B
3691	 54.43	0	4507192..4509177	-	661	192360336	xyn11A	CJA_3763	-	endo-1,4-beta-xylanase, esterase, xyn11A
3692	 29.63	-2	4509382..4509516	+	44	192362467	-	CJA_3765	-	hypothetical protein
3693	 27.19	-2	4509470..4509583	-	37	192360913	-	CJA_3764	-	hypothetical protein
3694	 50.10	0	4509645..4510616	-	323	192359519	-	CJA_3766	-	integral membrane protein
3695	 54.06	0	4510665..4511600	-	311	192358896	-	CJA_3767	-	Periplasmic binding protein
3696	 59.87	+1	4511632..4512720	-	362	192359762	cobC	CJA_3768	-	cobalamin biosynthetic protein
3697	 64.17	+2	4512717..4513676	-	319	192361808	cobD	CJA_3769	-	cobalamin biosynthesis protein CobD
3698	 64.61	+2	4513683..4514216	-	177	192359091	cobP	CJA_3770	-	cobinamide kinase
3699	 66.67	+2	4514250..4515050	-	266	192360167	-	CJA_3771	-	heme/hemin ABC transporter, ATP-binding protein
3700	 66.38	+2	4515047..4516075	-	342	192361179	-	CJA_3772	-	probable permease of ABC transporter
3701	 62.26	+1	4516072..4517592	-	506	192359417	cobQ	CJA_3773	-	cobyric acid synthase CobQ
3702	 60.49	+1	4517595..4518242	-	215	192360337	cobO	CJA_3774	-	cob(I)alamin adenosyltransferase
3703	 58.64	+1	4518311..4520155	-	614	192361434	-	CJA_3775	-	putative TonB-dependent receptor
3704	 56.01	0	4520240..4520530	+	96	192361607	-	CJA_3776	-	hypothetical protein
3705	 67.95	+2	4520576..4521667	-	363	192360266	-	CJA_3777	-	hypothetical protein
3706	 60.83	+1	4521669..4523519	-	616	192359407	-	CJA_3778	-	hypothetical protein
3707	 54.24	0	4523595..4525115	-	506	192360070	-	CJA_3779	-	putative lipoprotein
3708	 51.81	0	4525119..4526861	-	580	192358803	-	CJA_3780	-	hypothetical protein
3709	 51.11	0	4527268..4527582	+	104	192362447	-	CJA_3781	-	IS66 family element, Orf1 protein
3710	 45.30	-1	4527579..4527929	+	116	192361473	-	CJA_3782	-	IS66 family element, Orf2 protein
3711	 46.40	-1	4527968..4529551	+	527	192361545	-	CJA_3783	-	IS66 family element, transposase
3712	 39.66	-2	4529683..4531152	+	489	192360397	man5E	CJA_3784	-	endo-beta-mannanase, putative, man5E
3713	 60.28	+1	4531575..4532435	-	286	192359355	-	CJA_3785	-	ISCja1, transposase orfB
3714	 57.67	+1	4532432..4532731	-	99	192361257	-	CJA_3786	-	ISCja1, transposase orfA
3715	 36.65	-2	4533650..4534192	-	180	192360893	-	CJA_3787	-	putative hypoxanthine phosphoribosyltransferase
3716	 36.40	-2	4534535..4535023	-	162	192362530	-	CJA_3788	-	hypothetical protein
3717	 36.52	-2	4535045..4536301	-	418	192359554	-	CJA_3789	-	putative phosphoribosylglycinamide synthetase
3718	 39.10	-2	4536288..4537067	-	259	192361629	-	CJA_3790	-	putative methylthioadenosine/S-adenosyl homocysteine nucleosidase
3719	 34.82	-2	4537073..4537810	-	245	192359488	-	CJA_3791	-	hypothetical protein
3720	 60.28	+1	4538047..4538907	-	286	192360363	-	CJA_3792	-	ISCja1, transposase orfB
3721	 57.67	+1	4538904..4539203	-	99	192359154	-	CJA_3793	-	ISCja1, transposase orfA
3722	 42.70	-1	4539346..4542579	-	1077	192359536	-	CJA_3794	-	DEAD/DEAH box helicase
3723	 42.56	-1	4542576..4543388	-	270	192362518	-	CJA_3795	-	hypothetical protein
3724	 38.89	-2	4543405..4543710	-	101	192362064	-	CJA_3796	-	hypothetical protein
3725	 39.64	-2	4543994..4545595	-	533	192361042	tnsE	CJA_3797	-	Tn7-Cj, transposition protein TnsE
3726	 40.69	-2	4545561..4547123	-	520	192359709	tnsD	CJA_3798	-	Tn7-Cj, transposition protein TnsD
3727	 41.05	-2	4547124..4548743	-	539	192358899	tnsC	CJA_3799	-	Tn7-Cj, transposition protein TnsC
3728	 43.23	-1	4548733..4550844	-	703	192362419	tnsB	CJA_3800	-	Tn7-Cj, transposase protein TnsB
3729	 44.87	-1	4550828..4551685	-	285	192359060	tnsA	CJA_3801	-	Tn7-Cj, transposase protein TnsA
3730	 52.97	0	4551830..4553662	-	610	192360090	glmS	CJA_3802	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
3731	 55.21	0	4553705..4554472	-	255	192359146	srlR	CJA_3803	-	Putative transcriptional regulator, DeoR family
3732	 52.10	0	4554546..4556810	-	754	192360030	cel9C	CJA_3804	-	cellulase, putative, cel9C
3733	 48.58	0	4556941..4557399	-	152	192360811	-	CJA_3805	-	Helix-turn-helix domain protein
3734	 56.61	0	4557526..4558887	-	453	192359186	glmU	CJA_3806	-	UDP-N-acetylglucosamine pyrophosphorylase
3735	 58.61	+1	4559021..4559467	+	148	192361255	-	CJA_3807	-	SEC-C motif domain protein
3736	 55.16	0	4559541..4559966	-	141	192362121	atpC	CJA_3808	-	ATP synthase F1, epsilon subunit
3737	 52.54	0	4560030..4561409	-	459	192359136	atpD	CJA_3809	-	ATP synthase F1, beta subunit
3738	 51.62	0	4561530..4562393	-	287	192359948	atpG	CJA_3810	-	ATP synthase F1, gamma subunit
3739	 54.11	0	4562445..4563989	-	514	192362476	atpA	CJA_3811	-	ATP synthase F1, alpha subunit
3740	 50.65	0	4564014..4564550	-	178	192362048	atpH	CJA_3812	-	ATP synthase F1, delta subunit
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.