IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3364	 51.24	0	4114639..4115967	+	442	192360621	-	CJA_3434	-	UDP-glucose dehydrogenase
3365	 51.26	0	4115998..4117068	+	356	192361310	rfbB	CJA_3435	-	dTDP-glucose 4,6-dehydratase
3366	 49.32	0	4117091..4117966	+	291	192362304	rfbA	CJA_3436	-	glucose-1-phosphate thymidylyltransferase
3367	 47.51	0	4117963..4118844	+	293	192359580	rfbD	CJA_3437	-	dTDP-4-dehydrorhamnose reductase
3368	 44.26	-1	4118853..4119401	+	182	192360654	rfbC	CJA_3438	-	dTDP-4-dehydrorhamnose 3,5-epimerase
3369	 36.05	-2	4119420..4120193	+	257	192360880	wzm	CJA_3439	-	Wzm
3370	 41.84	-1	4120190..4120894	+	234	192361780	wzt	CJA_3440	-	Wzt
3371	 43.47	-1	4120977..4122782	+	601	192359018	gt2G	CJA_3441	-	glycosyl transferase, putative, gt2G
3372	 43.38	-1	4122789..4124012	+	407	192360121	gt4C	CJA_3442	-	glycosyl transferase, putative, gt4C
3373	 45.31	-1	4124026..4125186	+	386	192359274	-	CJA_3443	-	hypothetical protein
3374	 47.54	0	4125389..4126528	+	379	192360306	-	CJA_3444	-	hypothetical protein
3375	 49.41	0	4126525..4129143	+	872	192359986	-	CJA_3445	-	Capsule polysaccharide biosynthesis protein family
3376	 48.68	0	4129137..4132577	+	1146	192361766	-	CJA_3447	-	hypothetical protein
3377	 49.65	0	4131318..4131458	-	46	192361087	-	CJA_3446	-	hypothetical protein
3378	 37.97	-2	4132670..4133488	+	272	192359530	-	CJA_3448	-	glycosyl transferase, group 2 family protein
3379	 33.27	-2	4133524..4135008	+	494	192360636	-	CJA_3449	-	putative GtrC
3380	 42.34	-1	4135046..4137100	+	684	192361511	gt2E	CJA_3450	-	glycosyl transferase, putative, gt2E
3381	 40.33	-2	4137090..4137989	+	299	192362316	gt2D	CJA_3451	-	glycosyl transferase, putative, gt2D
3382	 37.75	-2	4138514..4139509	-	331	192361939	gt2C	CJA_3452	-	glycosyl transferase, putative, gt2C
3383	 40.21	-2	4139512..4141359	-	615	192360372	-	CJA_3453	-	hypothetical protein
3384	 41.97	-1	4141365..4142198	-	277	192359352	gt2B	CJA_3454	-	glycosyl transferase, putative, gt2B
3385	 45.37	-1	4142202..4144211	-	669	192362363	-	CJA_3455	-	WbgZ
3386	 52.01	0	4144324..4145217	-	297	192361507	wbjF	CJA_3456	-	NAD dependent epimerase/dehydratase-like protein
3387	 52.79	0	4145214..4146251	-	345	192360403	wbpL	CJA_3457	-	Glycosyl transferase group 4-like protein
3388	 45.56	-1	4146332..4146511	-	59	192359331	-	CJA_3458	-	hypothetical protein
3389	 48.21	0	4146618..4147733	+	371	192361145	-	CJA_3459	-	GGDEF domain protein
3390	 56.27	0	4147822..4150236	-	804	192359829	-	CJA_3460	-	hypothetical protein
3391	 58.77	+1	4150504..4151820	-	438	192358827	-	CJA_3461	-	efflux ABC transporter, permease protein
3392	 60.00	+1	4151820..4152554	-	244	192361725	-	CJA_3462	-	ABC transporter, ATP-binding protein
3393	 57.14	0	4152630..4153301	+	223	192361151	-	CJA_3463	-	hypothetical protein
3394	 56.34	0	4153311..4154336	-	341	192362243	-	CJA_3464	-	putative cobalamin synthesis protein
3395	 54.35	0	4154415..4155632	-	405	192359495	-	CJA_3465	-	predicted GTPase
3396	 51.05	0	4156093..4159152	+	1019	192360640	-	CJA_3466	-	putative TonB-dependent receptor
3397	 47.64	0	4159248..4160771	+	507	192359851	-	CJA_3467	-	tryptophan halogenase
3398	 46.57	-1	4160842..4162080	+	412	192361413	-	CJA_3468	-	Bacterial extracellular solute-binding protein
3399	 48.60	0	4162105..4164108	+	667	192361990	-	CJA_3469	-	product exhibits features of a methyl-accepting chemotaxis protein
3400	 50.66	0	4164250..4166742	-	830	192358812	man5C	CJA_3470	-	endo-1, 4-beta mannanase, man5C
3401	 21.30	-2	4167090..4167197	-	35	192360740	-	CJA_3471	-	hypothetical protein
3402	 55.43	0	4167284..4168822	-	512	192361895	-	CJA_3472	-	GGDEF domain protein
3403	 50.00	0	4168989..4169102	-	37	192360208	-	CJA_3473	-	hypothetical protein
3404	 49.31	0	4169099..4169749	-	216	192359563	dsbA	CJA_3474	-	DsbA
3405	 53.17	0	4169784..4169909	+	41	192360224	-	CJA_3475	-	hypothetical protein
3406	 54.68	0	4169947..4170630	-	227	192359374	-	CJA_3476	-	cytochrome c4
3407	 52.88	0	4170781..4171440	+	219	192361932	-	CJA_3477	-	putative GTPase, involved in coordination of cell cycle (EngB)
3408	 49.40	0	4171849..4174662	-	937	192361143	-	CJA_3478	-	DNA polymerase I
3409	 47.29	0	4175000..4175257	+	85	192359796	-	CJA_3479	-	hypothetical protein
3410	 49.82	0	4175576..4175860	+	94	192359463	-	CJA_3481	-	hypothetical protein
3411	 51.62	0	4175837..4176793	-	318	192358784	-	CJA_3480	-	high-affinity zinc uptake system protein ZnuA
3412	 57.34	0	4176827..4177330	+	167	192362339	np20	CJA_3482	-	transcriptional regulator np20
3413	 57.68	+1	4177297..4178097	+	266	192360961	znuC	CJA_3483	-	zinc ABC transporter, ATP-binding protein ZnuC
3414	 59.07	+1	4178069..4178884	+	271	192361992	znuB	CJA_3484	-	permease of ABC zinc transporter ZnuB
3415	 47.15	0	4179003..4179248	+	81	192358830	-	CJA_3485	-	hypothetical protein
3416	 54.61	0	4179315..4180226	+	303	192361482	-	CJA_3486	-	Metallo-phosphoesterase
3417	 57.65	+1	4180518..4181282	-	254	192362461	-	CJA_3487	-	putative integral membrane protein
3418	 52.90	0	4181279..4181692	-	137	192359250	-	CJA_3488	-	thioesterase family protein domain protein
3419	 56.32	0	4181712..4182494	-	260	192360299	-	CJA_3489	-	hydratase/decarboxylase family protein
3420	 54.58	0	4182590..4183996	-	468	192361359	-	CJA_3490	-	PA5346-like protein
3421	 58.02	+1	4184175..4186313	-	712	192362473	-	CJA_3491	-	ATP-dependent DNA helicase RecG
3422	 54.51	0	4186289..4187209	-	306	192358858	-	CJA_3492	-	transcriptional regulator, LysR family
3423	 54.33	0	4187276..4188142	+	288	192360600	-	CJA_3493	-	hypothetical protein
3424	 51.71	0	4188265..4189314	-	349	192362185	oprF	CJA_3494	-	OmpA domain protein
3425	 46.46	-1	4189472..4190164	-	230	192359400	trmB	CJA_3495	-	tRNA (guanine-N(7)-)-methyltransferase
3426	 54.26	0	4190253..4190639	-	128	192360907	-	CJA_3496	-	hypothetical protein
3427	 54.70	0	4190722..4191582	-	286	192362020	rpoH	CJA_3497	-	alternative sigma factor RpoH
3428	 60.76	+1	4191682..4192782	-	366	192362018	ftsX	CJA_3498	-	cell division protein FtsX
3429	 55.61	0	4192779..4193447	-	222	192359009	ftsE	CJA_3499	-	cell division ABC transporter, ATP-binding protein FtsE
3430	 55.82	0	4193460..4194584	-	374	192360531	ftsY	CJA_3500	-	signal recognition particle receptor FtsY
3431	 59.55	+1	4194713..4195330	+	205	192361410	-	CJA_3501	-	putative methyltransferase
3432	 53.33	0	4195331..4195960	-	209	192361821	-	CJA_3502	-	hypothetical protein
3433	 54.05	0	4196164..4196694	+	176	192359123	coaD	CJA_3503	-	pantetheine-phosphate adenylyltransferase
3434	 50.35	0	4196747..4197175	-	142	192360092	-	CJA_3504	-	transglycosylase associated gene
3435	 56.83	0	4197135..4197947	-	270	192360935	mutM	CJA_3505	-	formamidopyrimidine-DNA glycosylase
3436	 59.14	+1	4198139..4198231	-	30	192361276	-	CJA_3506	-	hypothetical protein
3437	 53.71	0	4198234..4198866	+	210	192362202	-	CJA_3507	-	PEP-CTERM putative exosortase interaction domain protein
3438	 49.53	0	4198936..4199781	-	281	192359617	-	CJA_3508	-	hypothetical protein
3439	 50.30	0	4199783..4200112	-	109	192360417	-	CJA_3509	-	hypothetical protein
3440	 53.46	0	4200105..4201520	-	471	192359718	-	CJA_3510	-	probable two-component sensor
3441	 50.00	0	4201517..4202176	-	219	192360483	-	CJA_3511	-	Response regulator receiver domain protein
3442	 47.62	0	4202171..4202296	+	41	192361720	-	CJA_3512	-	hypothetical protein
3443	 58.69	+1	4202403..4204370	-	655	192359007	kefB	CJA_3513	-	glutathione-regulated potassium-efflux system protein
3444	 46.15	-1	4204515..4204670	-	51	192360018	rpmG	CJA_3514	-	ribosomal protein L33
3445	 48.52	0	4204688..4204924	-	78	192361901	-	CJA_3515	-	ribosomal protein L28-related protein
3446	 54.05	0	4205349..4206212	+	287	192360221	-	CJA_3516	-	hypothetical protein
3447	 51.67	0	4206261..4206947	+	228	192359540	-	CJA_3518	-	hypothetical protein
3448	 43.18	-1	4206925..4207371	-	148	192361304	-	CJA_3517	-	putative lipoprotein
3449	 47.65	0	4207392..4209605	-	737	192358859	-	CJA_3519	-	putative adenylate cyclase
3450	 43.65	-1	4209665..4209790	+	41	192359915	-	CJA_3520	-	hypothetical protein
3451	 51.50	0	4209816..4210514	+	232	192359983	-	CJA_3521	-	cyclic AMP receptor protein
3452	 58.96	+1	4210525..4211199	-	224	192360376	-	CJA_3522	-	DNA repair protein RadC
3453	 58.96	+1	4211393..4212664	+	423	192359279	coaBC	CJA_3523	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
3454	 55.14	0	4212688..4215195	+	835	192362494	algC	CJA_3524	-	phosphomannomutase AlgC
3455	 52.98	0	4215218..4216123	+	301	192361466	argB	CJA_3525	-	acetylglutamate kinase
3456	 58.21	+1	4216173..4216787	+	204	192358988	-	CJA_3526	-	transcriptional regulator, TetR family
3457	 53.12	0	4216832..4217488	-	218	192361699	-	CJA_3527	-	hypothetical protein
3458	 53.40	0	4217502..4218149	-	215	192362114	pyrE	CJA_3528	-	orotate phosphoribosyltransferase
3459	 52.53	0	4218360..4219130	+	256	192360058	crc	CJA_3529	-	catabolite repression control protein
3460	 53.81	0	4219202..4219621	-	139	192360366	-	CJA_3530	-	Tat (twin-arginine translocation) pathway signal sequence domain protein
3461	 53.59	0	4219713..4221188	-	491	192358816	thiI	CJA_3531	-	thiazole biosynthesis protein ThiI
3462	 52.31	0	4221541..4222836	-	431	192362063	-	CJA_3532	-	transporter, monovalent cation:proton antiporter family
3463	 50.00	0	4222839..4223030	-	63	192360813	-	CJA_3533	-	hypothetical protein
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.