IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3316	 55.40	0	4059872..4060705	-	277	192361669	hemD	CJA_3385	-	uroporphyrinogen-III synthase
3317	 59.49	+1	4060702..4061649	-	315	192360982	hemC	CJA_3386	-	porphobilinogen deaminase
3318	 51.53	0	4061767..4063200	-	477	192359811	-	CJA_3387	-	high affinity choline transporter
3319	 47.37	0	4063314..4063598	-	94	192358907	-	CJA_3388	-	hypothetical protein
3320	 53.27	0	4063605..4063925	-	106	192362073	-	CJA_3389	-	PA5285-like protein
3321	 50.15	0	4064326..4064664	-	112	192361217	-	CJA_3390	-	Nitrogen regulatory protein P-II
3322	 51.14	0	4064847..4066115	-	422	192360328	-	CJA_3391	-	ammonium transporter
3323	 53.39	0	4066147..4066485	-	112	192362245	-	CJA_3392	-	Nitrogen regulatory protein P-II
3324	 52.14	0	4066894..4067127	+	77	192360696	-	CJA_3393	-	hypothetical protein
3325	 59.79	+1	4067142..4068755	+	537	192359858	-	CJA_3394	-	Mg chelatase homolog
3326	 56.70	0	4068757..4070472	-	571	192359035	-	CJA_3395	-	EAL domain protein
3327	 56.12	0	4070690..4072708	+	672	192362002	rep	CJA_3396	-	ATP-dependent DNA helicase Rep
3328	 57.14	0	4072809..4073249	-	146	192362206	-	CJA_3397	-	Cytochrome c5
3329	 52.48	0	4073447..4075504	+	685	192361268	prsK	CJA_3398	-	putative PEP-CTERM system histidine kinase
3330	 52.54	0	4075501..4076895	+	464	192359614	prsR	CJA_3399	-	putative PEP-CTERM system response regulator
3331	 53.19	0	4076905..4077045	-	46	192360425	-	CJA_3400	-	hypothetical protein
3332	 50.40	0	4077157..4077900	+	247	192361427	-	CJA_3402	-	putative lipoprotein
3333	 53.15	0	4077240..4077350	-	36	192361763	-	CJA_3401	-	hypothetical protein
3334	 52.23	0	4078218..4078958	+	246	192360814	-	CJA_3403	-	PEP-CTERM putative exosortase interaction domain protein
3335	 47.68	0	4079167..4080546	+	459	192361630	-	CJA_3404	-	eight transmembrane protein EpsH (proposed exosortase)
3336	 45.61	-1	4080557..4081696	+	379	192359179	gt2M	CJA_3405	-	glycosyl transferase, putative, gt2M
3337	 46.96	0	4081708..4083057	+	449	192360068	cAPK	CJA_3406	-	capK related-protein
3338	 46.99	0	4083045..4083959	+	304	192360721	gt2I	CJA_3407	-	glycosyl transferase, putative, gt2I
3339	 47.96	0	4083960..4084964	+	334	192361787	pda4E	CJA_3408	-	polysaccharide deacetylase protein, putative, pda4E
3340	 50.12	0	4085014..4086669	+	551	192359408	-	CJA_3409	-	hypothetical protein
3341	 54.11	0	4086666..4087796	+	376	192360155	gt4B	CJA_3410	-	glycosyl transferase, putative, gt4B
3342	 52.56	0	4087875..4088909	+	344	192361549	gt4A	CJA_3411	-	glycosyl transferase, putative, gt4A
3343	 44.19	-1	4088906..4090195	+	429	192359666	-	CJA_3412	-	O-antigen polymerase family protein
3344	 48.98	0	4090258..4091184	+	308	192361642	-	CJA_3413	-	glycosyl transferase, group 1 family protein domain protein
3345	 46.83	0	4091305..4092378	+	357	192361039	-	CJA_3414	-	hypothetical protein
3346	 35.34	-2	4092553..4093746	-	397	192359925	-	CJA_3415	-	hypothetical protein
3347	 34.09	-2	4093736..4094656	-	306	192360326	gt2L	CJA_3416	-	glycosyl transferase, putative, gt2L
3348	 34.38	-2	4094660..4096189	-	509	192362089	-	CJA_3417	-	polysaccharide biosynthesis family protein
3349	 45.45	-1	4096186..4097208	-	340	192362475	-	CJA_3418	-	hypothetical protein
3350	 46.27	-1	4097221..4099848	-	875	192361411	-	CJA_3419	-	TPR domain protein
3351	 43.75	-1	4099892..4101187	-	431	192359903	-	CJA_3420	-	hypothetical protein
3352	 50.88	0	4100129..4100242	+	37	192358905	-	CJA_3421	-	hypothetical protein
3353	 46.64	-1	4101243..4102031	-	262	192360234	-	CJA_3422	-	putative polysaccharide biosynthesis protein
3354	 46.84	0	4102041..4103558	-	505	192359383	-	CJA_3423	-	polysaccharide chain length determinant protein
3355	 50.84	0	4103621..4104214	-	197	192360918	-	CJA_3424	-	Polysaccharide biosynthesis/export protein
3356	 50.14	0	4104275..4105654	-	459	192360082	lthA	CJA_3425	-	Bacterial sugar transferase
3357	 50.04	0	4105904..4107178	+	424	192359672	-	CJA_3426	-	polysaccharide biosynthesis protein
3358	 49.70	0	4107197..4108204	+	335	192361703	-	CJA_3427	-	NAD dependent epimerase/dehydratase family superfamily
3359	 55.25	0	4108262..4109128	+	288	192361420	pda4C	CJA_3428	-	polysaccharide deacetylase, putative, pda4C
3360	 39.00	-2	4110099..4110875	+	258	192360564	-	CJA_3430	-	putative lipoprotein
3361	 53.31	0	4111699..4112424	-	241	192361995	-	CJA_3431	-	antirepressor protein
3362	 55.44	0	4112602..4112895	+	97	192362111	-	CJA_3432	-	hypothetical protein
3363	 54.04	0	4112897..4113181	+	94	192359557	-	CJA_3433	-	transcriptional regulator, Cro/CI family
3364	 51.24	0	4114639..4115967	+	442	192360621	-	CJA_3434	-	UDP-glucose dehydrogenase
3365	 51.26	0	4115998..4117068	+	356	192361310	rfbB	CJA_3435	-	dTDP-glucose 4,6-dehydratase
3366	 49.32	0	4117091..4117966	+	291	192362304	rfbA	CJA_3436	-	glucose-1-phosphate thymidylyltransferase
3367	 47.51	0	4117963..4118844	+	293	192359580	rfbD	CJA_3437	-	dTDP-4-dehydrorhamnose reductase
3368	 44.26	-1	4118853..4119401	+	182	192360654	rfbC	CJA_3438	-	dTDP-4-dehydrorhamnose 3,5-epimerase
3369	 36.05	-2	4119420..4120193	+	257	192360880	wzm	CJA_3439	-	Wzm
3370	 41.84	-1	4120190..4120894	+	234	192361780	wzt	CJA_3440	-	Wzt
3371	 43.47	-1	4120977..4122782	+	601	192359018	gt2G	CJA_3441	-	glycosyl transferase, putative, gt2G
3372	 43.38	-1	4122789..4124012	+	407	192360121	gt4C	CJA_3442	-	glycosyl transferase, putative, gt4C
3373	 45.31	-1	4124026..4125186	+	386	192359274	-	CJA_3443	-	hypothetical protein
3374	 47.54	0	4125389..4126528	+	379	192360306	-	CJA_3444	-	hypothetical protein
3375	 49.41	0	4126525..4129143	+	872	192359986	-	CJA_3445	-	Capsule polysaccharide biosynthesis protein family
3376	 48.68	0	4129137..4132577	+	1146	192361766	-	CJA_3447	-	hypothetical protein
3377	 49.65	0	4131318..4131458	-	46	192361087	-	CJA_3446	-	hypothetical protein
3378	 37.97	-2	4132670..4133488	+	272	192359530	-	CJA_3448	-	glycosyl transferase, group 2 family protein
3379	 33.27	-2	4133524..4135008	+	494	192360636	-	CJA_3449	-	putative GtrC
3380	 42.34	-1	4135046..4137100	+	684	192361511	gt2E	CJA_3450	-	glycosyl transferase, putative, gt2E
3381	 40.33	-2	4137090..4137989	+	299	192362316	gt2D	CJA_3451	-	glycosyl transferase, putative, gt2D
3382	 37.75	-2	4138514..4139509	-	331	192361939	gt2C	CJA_3452	-	glycosyl transferase, putative, gt2C
3383	 40.21	-2	4139512..4141359	-	615	192360372	-	CJA_3453	-	hypothetical protein
3384	 41.97	-1	4141365..4142198	-	277	192359352	gt2B	CJA_3454	-	glycosyl transferase, putative, gt2B
3385	 45.37	-1	4142202..4144211	-	669	192362363	-	CJA_3455	-	WbgZ
3386	 52.01	0	4144324..4145217	-	297	192361507	wbjF	CJA_3456	-	NAD dependent epimerase/dehydratase-like protein
3387	 52.79	0	4145214..4146251	-	345	192360403	wbpL	CJA_3457	-	Glycosyl transferase group 4-like protein
3388	 45.56	-1	4146332..4146511	-	59	192359331	-	CJA_3458	-	hypothetical protein
3389	 48.21	0	4146618..4147733	+	371	192361145	-	CJA_3459	-	GGDEF domain protein
3390	 56.27	0	4147822..4150236	-	804	192359829	-	CJA_3460	-	hypothetical protein
3391	 58.77	+1	4150504..4151820	-	438	192358827	-	CJA_3461	-	efflux ABC transporter, permease protein
3392	 60.00	+1	4151820..4152554	-	244	192361725	-	CJA_3462	-	ABC transporter, ATP-binding protein
3393	 57.14	0	4152630..4153301	+	223	192361151	-	CJA_3463	-	hypothetical protein
3394	 56.34	0	4153311..4154336	-	341	192362243	-	CJA_3464	-	putative cobalamin synthesis protein
3395	 54.35	0	4154415..4155632	-	405	192359495	-	CJA_3465	-	predicted GTPase
3396	 51.05	0	4156093..4159152	+	1019	192360640	-	CJA_3466	-	putative TonB-dependent receptor
3397	 47.64	0	4159248..4160771	+	507	192359851	-	CJA_3467	-	tryptophan halogenase
3398	 46.57	-1	4160842..4162080	+	412	192361413	-	CJA_3468	-	Bacterial extracellular solute-binding protein
3399	 48.60	0	4162105..4164108	+	667	192361990	-	CJA_3469	-	product exhibits features of a methyl-accepting chemotaxis protein
3400	 50.66	0	4164250..4166742	-	830	192358812	man5C	CJA_3470	-	endo-1, 4-beta mannanase, man5C
3401	 21.30	-2	4167090..4167197	-	35	192360740	-	CJA_3471	-	hypothetical protein
3402	 55.43	0	4167284..4168822	-	512	192361895	-	CJA_3472	-	GGDEF domain protein
3403	 50.00	0	4168989..4169102	-	37	192360208	-	CJA_3473	-	hypothetical protein
3404	 49.31	0	4169099..4169749	-	216	192359563	dsbA	CJA_3474	-	DsbA
3405	 53.17	0	4169784..4169909	+	41	192360224	-	CJA_3475	-	hypothetical protein
3406	 54.68	0	4169947..4170630	-	227	192359374	-	CJA_3476	-	cytochrome c4
3407	 52.88	0	4170781..4171440	+	219	192361932	-	CJA_3477	-	putative GTPase, involved in coordination of cell cycle (EngB)
3408	 49.40	0	4171849..4174662	-	937	192361143	-	CJA_3478	-	DNA polymerase I
3409	 47.29	0	4175000..4175257	+	85	192359796	-	CJA_3479	-	hypothetical protein
3410	 49.82	0	4175576..4175860	+	94	192359463	-	CJA_3481	-	hypothetical protein
3411	 51.62	0	4175837..4176793	-	318	192358784	-	CJA_3480	-	high-affinity zinc uptake system protein ZnuA
3412	 57.34	0	4176827..4177330	+	167	192362339	np20	CJA_3482	-	transcriptional regulator np20
3413	 57.68	+1	4177297..4178097	+	266	192360961	znuC	CJA_3483	-	zinc ABC transporter, ATP-binding protein ZnuC
3414	 59.07	+1	4178069..4178884	+	271	192361992	znuB	CJA_3484	-	permease of ABC zinc transporter ZnuB
3415	 47.15	0	4179003..4179248	+	81	192358830	-	CJA_3485	-	hypothetical protein
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.