IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3277	 56.68	0	4007848..4008969	-	373	192359767	dnaJ	CJA_3346	-	chaperone protein DnaJ
3278	 53.77	0	4009089..4011011	-	640	192361066	dnaK	CJA_3347	-	chaperone protein DnaK
3279	 59.20	+1	4011189..4011764	-	191	192361899	grpE	CJA_3348	-	co-chaperone GrpE
3280	 35.42	-2	4012030..4012125	+	31	192360441	-	CJA_3349	-	hypothetical protein
3281	 56.67	0	4012225..4013844	+	539	192361242	-	CJA_3350	-	methyl-accepting chemotaxis protein
3282	 60.31	+1	4013924..4015591	+	555	192358991	recN	CJA_3351	-	DNA repair protein RecN
3283	 48.42	0	4015666..4016076	-	136	192359556	fur	CJA_3352	-	transcriptional regulator Fur
3284	 51.41	0	4016107..4016604	+	165	192360954	-	CJA_3353	-	Outer membrane lipoprotein omlA precursor
3285	 56.57	0	4016678..4018321	-	547	192359905	-	CJA_3354	-	GGDEF domain protein
3286	 59.68	+1	4018524..4020941	+	805	192360118	-	CJA_3355	-	sensory box/GGDEF family protein
3287	 54.38	0	4021047..4022267	+	406	192359047	-	CJA_3357	-	HD domain protein
3288	 55.90	0	4022261..4022650	-	129	192361926	-	CJA_3356	-	response regulator
3289	 53.19	0	4022647..4024932	-	761	192361097	-	CJA_3358	-	two-component hybrid sensor and regulator
3290	 55.95	0	4025046..4029011	-	1321	192362033	-	CJA_3359	-	two-component hybrid sensor and regulator
3291	 55.56	0	4029154..4029477	-	107	192360900	-	CJA_3360	-	Protein yfjF
3292	 54.94	0	4029504..4029938	-	144	192360500	-	CJA_3361	-	hypothetical protein
3293	 55.21	0	4030116..4030595	+	159	192358965	smpB	CJA_3362	-	SsrA-binding protein
3294	 59.41	+1	4030596..4031642	-	348	192358959	-	CJA_3363	-	transcriptional regulator, LuxR family
3295	 51.67	0	4031760..4031879	-	39	192361935	-	CJA_3364	-	hypothetical protein
3296	 62.83	+1	4031925..4032680	+	251	192362327	-	CJA_3365	-	hydrolase, alpha/beta fold family
3297	 48.39	0	4032758..4033873	+	371	192359800	-	CJA_3366	-	transcriptional regulator, LuxR family
3298	 50.80	0	4034071..4035954	+	627	192359311	-	CJA_3367	-	putative lipoprotein
3299	 56.21	0	4036024..4038279	+	751	192360235	-	CJA_3368	-	hypothetical protein
3300	 54.89	0	4038351..4039445	-	364	192359406	cel5C	CJA_3369	-	cellulase, putative, cel5C
3301	 61.02	+1	4039556..4043521	-	1321	192361873	-	CJA_3370	-	hypothetical protein
3302	 56.24	0	4043485..4045230	-	581	192360745	-	CJA_3371	-	outer membrane protein, OMP85 family
3303	 57.58	+1	4045370..4046227	+	285	192360807	-	CJA_3372	-	hypothetical protein
3304	 60.77	+1	4046248..4046637	+	129	192360071	-	CJA_3373	-	hypothetical protein
3305	 52.54	0	4046642..4046995	+	117	192359203	-	CJA_3374	-	hypothetical protein
3306	 55.61	0	4047100..4049016	+	638	192362208	-	CJA_3375	-	sensory box/GGDEF family protein
3307	 53.08	0	4049213..4049764	+	183	192361341	-	CJA_3376	-	hypothetical protein
3308	 49.17	0	4049805..4050347	-	180	192360518	rnk	CJA_3377	-	regulator of nucleoside diphosphate kinase
3309	 35.83	-2	4050506..4051627	-	373	192359689	-	CJA_3378	-	hypothetical protein
3310	 52.49	0	4051663..4053045	-	460	192361708	-	CJA_3379	-	MATE efflux family protein subfamily
3311	 53.71	0	4053079..4054344	-	421	192360847	-	CJA_3380	-	excitatory amino acid transporter
3312	 52.94	0	4054347..4055009	-	220	192360036	-	CJA_3381	-	hypothetical protein
3313	 60.26	+1	4055110..4057497	-	795	192360558	gt51B	CJA_3382	-	murein polymerase, putative, gt51B
3314	 55.50	0	4057501..4058709	-	402	192359509	-	CJA_3383	-	hemY protein
3315	 52.82	0	4058709..4059878	-	389	192358919	-	CJA_3384	-	putative uroporphyrinogen III methylase
3316	 55.40	0	4059872..4060705	-	277	192361669	hemD	CJA_3385	-	uroporphyrinogen-III synthase
3317	 59.49	+1	4060702..4061649	-	315	192360982	hemC	CJA_3386	-	porphobilinogen deaminase
3318	 51.53	0	4061767..4063200	-	477	192359811	-	CJA_3387	-	high affinity choline transporter
3319	 47.37	0	4063314..4063598	-	94	192358907	-	CJA_3388	-	hypothetical protein
3320	 53.27	0	4063605..4063925	-	106	192362073	-	CJA_3389	-	PA5285-like protein
3321	 50.15	0	4064326..4064664	-	112	192361217	-	CJA_3390	-	Nitrogen regulatory protein P-II
3322	 51.14	0	4064847..4066115	-	422	192360328	-	CJA_3391	-	ammonium transporter
3323	 53.39	0	4066147..4066485	-	112	192362245	-	CJA_3392	-	Nitrogen regulatory protein P-II
3324	 52.14	0	4066894..4067127	+	77	192360696	-	CJA_3393	-	hypothetical protein
3325	 59.79	+1	4067142..4068755	+	537	192359858	-	CJA_3394	-	Mg chelatase homolog
3326	 56.70	0	4068757..4070472	-	571	192359035	-	CJA_3395	-	EAL domain protein
3327	 56.12	0	4070690..4072708	+	672	192362002	rep	CJA_3396	-	ATP-dependent DNA helicase Rep
3328	 57.14	0	4072809..4073249	-	146	192362206	-	CJA_3397	-	Cytochrome c5
3329	 52.48	0	4073447..4075504	+	685	192361268	prsK	CJA_3398	-	putative PEP-CTERM system histidine kinase
3330	 52.54	0	4075501..4076895	+	464	192359614	prsR	CJA_3399	-	putative PEP-CTERM system response regulator
3331	 53.19	0	4076905..4077045	-	46	192360425	-	CJA_3400	-	hypothetical protein
3332	 50.40	0	4077157..4077900	+	247	192361427	-	CJA_3402	-	putative lipoprotein
3333	 53.15	0	4077240..4077350	-	36	192361763	-	CJA_3401	-	hypothetical protein
3334	 52.23	0	4078218..4078958	+	246	192360814	-	CJA_3403	-	PEP-CTERM putative exosortase interaction domain protein
3335	 47.68	0	4079167..4080546	+	459	192361630	-	CJA_3404	-	eight transmembrane protein EpsH (proposed exosortase)
3336	 45.61	-1	4080557..4081696	+	379	192359179	gt2M	CJA_3405	-	glycosyl transferase, putative, gt2M
3337	 46.96	0	4081708..4083057	+	449	192360068	cAPK	CJA_3406	-	capK related-protein
3338	 46.99	0	4083045..4083959	+	304	192360721	gt2I	CJA_3407	-	glycosyl transferase, putative, gt2I
3339	 47.96	0	4083960..4084964	+	334	192361787	pda4E	CJA_3408	-	polysaccharide deacetylase protein, putative, pda4E
3340	 50.12	0	4085014..4086669	+	551	192359408	-	CJA_3409	-	hypothetical protein
3341	 54.11	0	4086666..4087796	+	376	192360155	gt4B	CJA_3410	-	glycosyl transferase, putative, gt4B
3342	 52.56	0	4087875..4088909	+	344	192361549	gt4A	CJA_3411	-	glycosyl transferase, putative, gt4A
3343	 44.19	-1	4088906..4090195	+	429	192359666	-	CJA_3412	-	O-antigen polymerase family protein
3344	 48.98	0	4090258..4091184	+	308	192361642	-	CJA_3413	-	glycosyl transferase, group 1 family protein domain protein
3345	 46.83	0	4091305..4092378	+	357	192361039	-	CJA_3414	-	hypothetical protein
3346	 35.34	-2	4092553..4093746	-	397	192359925	-	CJA_3415	-	hypothetical protein
3347	 34.09	-2	4093736..4094656	-	306	192360326	gt2L	CJA_3416	-	glycosyl transferase, putative, gt2L
3348	 34.38	-2	4094660..4096189	-	509	192362089	-	CJA_3417	-	polysaccharide biosynthesis family protein
3349	 45.45	-1	4096186..4097208	-	340	192362475	-	CJA_3418	-	hypothetical protein
3350	 46.27	-1	4097221..4099848	-	875	192361411	-	CJA_3419	-	TPR domain protein
3351	 43.75	-1	4099892..4101187	-	431	192359903	-	CJA_3420	-	hypothetical protein
3352	 50.88	0	4100129..4100242	+	37	192358905	-	CJA_3421	-	hypothetical protein
3353	 46.64	-1	4101243..4102031	-	262	192360234	-	CJA_3422	-	putative polysaccharide biosynthesis protein
3354	 46.84	0	4102041..4103558	-	505	192359383	-	CJA_3423	-	polysaccharide chain length determinant protein
3355	 50.84	0	4103621..4104214	-	197	192360918	-	CJA_3424	-	Polysaccharide biosynthesis/export protein
3356	 50.14	0	4104275..4105654	-	459	192360082	lthA	CJA_3425	-	Bacterial sugar transferase
3357	 50.04	0	4105904..4107178	+	424	192359672	-	CJA_3426	-	polysaccharide biosynthesis protein
3358	 49.70	0	4107197..4108204	+	335	192361703	-	CJA_3427	-	NAD dependent epimerase/dehydratase family superfamily
3359	 55.25	0	4108262..4109128	+	288	192361420	pda4C	CJA_3428	-	polysaccharide deacetylase, putative, pda4C
3360	 39.00	-2	4110099..4110875	+	258	192360564	-	CJA_3430	-	putative lipoprotein
3361	 53.31	0	4111699..4112424	-	241	192361995	-	CJA_3431	-	antirepressor protein
3362	 55.44	0	4112602..4112895	+	97	192362111	-	CJA_3432	-	hypothetical protein
3363	 54.04	0	4112897..4113181	+	94	192359557	-	CJA_3433	-	transcriptional regulator, Cro/CI family
3364	 51.24	0	4114639..4115967	+	442	192360621	-	CJA_3434	-	UDP-glucose dehydrogenase
3365	 51.26	0	4115998..4117068	+	356	192361310	rfbB	CJA_3435	-	dTDP-glucose 4,6-dehydratase
3366	 49.32	0	4117091..4117966	+	291	192362304	rfbA	CJA_3436	-	glucose-1-phosphate thymidylyltransferase
3367	 47.51	0	4117963..4118844	+	293	192359580	rfbD	CJA_3437	-	dTDP-4-dehydrorhamnose reductase
3368	 44.26	-1	4118853..4119401	+	182	192360654	rfbC	CJA_3438	-	dTDP-4-dehydrorhamnose 3,5-epimerase
3369	 36.05	-2	4119420..4120193	+	257	192360880	wzm	CJA_3439	-	Wzm
3370	 41.84	-1	4120190..4120894	+	234	192361780	wzt	CJA_3440	-	Wzt
3371	 43.47	-1	4120977..4122782	+	601	192359018	gt2G	CJA_3441	-	glycosyl transferase, putative, gt2G
3372	 43.38	-1	4122789..4124012	+	407	192360121	gt4C	CJA_3442	-	glycosyl transferase, putative, gt4C
3373	 45.31	-1	4124026..4125186	+	386	192359274	-	CJA_3443	-	hypothetical protein
3374	 47.54	0	4125389..4126528	+	379	192360306	-	CJA_3444	-	hypothetical protein
3375	 49.41	0	4126525..4129143	+	872	192359986	-	CJA_3445	-	Capsule polysaccharide biosynthesis protein family
3376	 48.68	0	4129137..4132577	+	1146	192361766	-	CJA_3447	-	hypothetical protein
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.