IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3250	 54.06	0	3976244..3978226	-	660	192359437	-	CJA_3319	-	hypothetical protein
3251	 52.11	0	3978226..3978747	-	173	192361061	-	CJA_3320	-	hypothetical protein
3252	 53.60	0	3979073..3980059	-	328	192362049	-	CJA_3321	-	hypothetical protein
3253	 53.30	0	3980112..3980687	-	191	192362149	-	CJA_3322	-	hypothetical protein
3254	 54.87	0	3980966..3981448	-	160	192359702	gspM	CJA_3323	-	General secretion pathway protein M
3255	 54.67	0	3981459..3982733	-	424	192358999	gspL	CJA_3324	-	General secretion pathway protein L
3256	 52.85	0	3982828..3983985	-	385	192360242	gspK	CJA_3325	-	General secretion pathway protein K
3257	 54.49	0	3983954..3984643	-	229	192361501	gspJ	CJA_3326	-	General secretion pathway protein J
3258	 52.47	0	3984624..3985109	-	161	192361946	gspI	CJA_3327	-	General secretion pathway protein I
3259	 55.31	0	3985109..3985786	-	225	192359446	gspH	CJA_3328	-	General secretion pathway protein H
3260	 51.75	0	3985740..3986195	-	151	192360788	gspG	CJA_3329	-	General secretion pathway protein G
3261	 56.23	0	3986232..3987467	-	411	192361623	gspF	CJA_3330	-	General secretion pathway protein F
3262	 57.21	0	3987483..3989057	-	524	192360332	gspE	CJA_3331	-	General secretion pathway protein E
3263	 53.91	0	3989061..3991106	-	681	192361327	gspD	CJA_3332	-	General secretion pathway protein D
3264	 56.93	0	3991122..3992261	-	379	192360107	gspC	CJA_3333	-	General secretion pathway protein C
3265	 57.03	0	3992776..3993024	+	82	192361149	xseB	CJA_3334	-	exodeoxyribonuclease VII, small subunit
3266	 60.14	+1	3993021..3993908	+	295	192362196	ispA	CJA_3335	-	geranyltranstransferase
3267	 58.71	+1	3994013..3995923	+	636	192359149	dxs	CJA_3336	-	1-deoxy-D-xylulose-5-phosphate synthase
3268	 54.57	0	3996014..3997831	-	605	192359998	cel5E	CJA_3337	-	cellulase, putative, cel5E
3269	 56.23	0	3998478..3999770	+	430	192360830	man5A	CJA_3338	-	endo- 1,4-beta-mannanase man5A
3270	 55.87	0	4000143..4001003	-	286	192360892	cae1C	CJA_3339	-	carbohydrate esterase, putative, cae1C
3271	 57.39	0	4001019..4002128	-	369	192361685	adhC	CJA_3340	-	alcohol dehydrogenase C
3272	 59.44	+1	4002279..4003178	+	299	192360613	-	CJA_3341	-	transcriptional regulator, LysR family
3273	 52.92	0	4003211..4004425	-	404	192361474	nupG	CJA_3342	-	nucleoside-transport system protein
3274	 59.06	+1	4004593..4005735	-	380	192361579	-	CJA_3343	-	Oxidoreductase family, NAD-binding Rossmann fold domain protein
3275	 56.13	0	4005738..4006790	-	350	192358811	-	CJA_3344	-	AP endonuclease family 2 C terminus family
3276	 51.65	0	4006972..4007670	-	232	192358826	-	CJA_3345	-	CAAX amino terminal protease family protein
3277	 56.68	0	4007848..4008969	-	373	192359767	dnaJ	CJA_3346	-	chaperone protein DnaJ
3278	 53.77	0	4009089..4011011	-	640	192361066	dnaK	CJA_3347	-	chaperone protein DnaK
3279	 59.20	+1	4011189..4011764	-	191	192361899	grpE	CJA_3348	-	co-chaperone GrpE
3280	 35.42	-2	4012030..4012125	+	31	192360441	-	CJA_3349	-	hypothetical protein
3281	 56.67	0	4012225..4013844	+	539	192361242	-	CJA_3350	-	methyl-accepting chemotaxis protein
3282	 60.31	+1	4013924..4015591	+	555	192358991	recN	CJA_3351	-	DNA repair protein RecN
3283	 48.42	0	4015666..4016076	-	136	192359556	fur	CJA_3352	-	transcriptional regulator Fur
3284	 51.41	0	4016107..4016604	+	165	192360954	-	CJA_3353	-	Outer membrane lipoprotein omlA precursor
3285	 56.57	0	4016678..4018321	-	547	192359905	-	CJA_3354	-	GGDEF domain protein
3286	 59.68	+1	4018524..4020941	+	805	192360118	-	CJA_3355	-	sensory box/GGDEF family protein
3287	 54.38	0	4021047..4022267	+	406	192359047	-	CJA_3357	-	HD domain protein
3288	 55.90	0	4022261..4022650	-	129	192361926	-	CJA_3356	-	response regulator
3289	 53.19	0	4022647..4024932	-	761	192361097	-	CJA_3358	-	two-component hybrid sensor and regulator
3290	 55.95	0	4025046..4029011	-	1321	192362033	-	CJA_3359	-	two-component hybrid sensor and regulator
3291	 55.56	0	4029154..4029477	-	107	192360900	-	CJA_3360	-	Protein yfjF
3292	 54.94	0	4029504..4029938	-	144	192360500	-	CJA_3361	-	hypothetical protein
3293	 55.21	0	4030116..4030595	+	159	192358965	smpB	CJA_3362	-	SsrA-binding protein
3294	 59.41	+1	4030596..4031642	-	348	192358959	-	CJA_3363	-	transcriptional regulator, LuxR family
3295	 51.67	0	4031760..4031879	-	39	192361935	-	CJA_3364	-	hypothetical protein
3296	 62.83	+1	4031925..4032680	+	251	192362327	-	CJA_3365	-	hydrolase, alpha/beta fold family
3297	 48.39	0	4032758..4033873	+	371	192359800	-	CJA_3366	-	transcriptional regulator, LuxR family
3298	 50.80	0	4034071..4035954	+	627	192359311	-	CJA_3367	-	putative lipoprotein
3299	 56.21	0	4036024..4038279	+	751	192360235	-	CJA_3368	-	hypothetical protein
3300	 54.89	0	4038351..4039445	-	364	192359406	cel5C	CJA_3369	-	cellulase, putative, cel5C
3301	 61.02	+1	4039556..4043521	-	1321	192361873	-	CJA_3370	-	hypothetical protein
3302	 56.24	0	4043485..4045230	-	581	192360745	-	CJA_3371	-	outer membrane protein, OMP85 family
3303	 57.58	+1	4045370..4046227	+	285	192360807	-	CJA_3372	-	hypothetical protein
3304	 60.77	+1	4046248..4046637	+	129	192360071	-	CJA_3373	-	hypothetical protein
3305	 52.54	0	4046642..4046995	+	117	192359203	-	CJA_3374	-	hypothetical protein
3306	 55.61	0	4047100..4049016	+	638	192362208	-	CJA_3375	-	sensory box/GGDEF family protein
3307	 53.08	0	4049213..4049764	+	183	192361341	-	CJA_3376	-	hypothetical protein
3308	 49.17	0	4049805..4050347	-	180	192360518	rnk	CJA_3377	-	regulator of nucleoside diphosphate kinase
3309	 35.83	-2	4050506..4051627	-	373	192359689	-	CJA_3378	-	hypothetical protein
3310	 52.49	0	4051663..4053045	-	460	192361708	-	CJA_3379	-	MATE efflux family protein subfamily
3311	 53.71	0	4053079..4054344	-	421	192360847	-	CJA_3380	-	excitatory amino acid transporter
3312	 52.94	0	4054347..4055009	-	220	192360036	-	CJA_3381	-	hypothetical protein
3313	 60.26	+1	4055110..4057497	-	795	192360558	gt51B	CJA_3382	-	murein polymerase, putative, gt51B
3314	 55.50	0	4057501..4058709	-	402	192359509	-	CJA_3383	-	hemY protein
3315	 52.82	0	4058709..4059878	-	389	192358919	-	CJA_3384	-	putative uroporphyrinogen III methylase
3316	 55.40	0	4059872..4060705	-	277	192361669	hemD	CJA_3385	-	uroporphyrinogen-III synthase
3317	 59.49	+1	4060702..4061649	-	315	192360982	hemC	CJA_3386	-	porphobilinogen deaminase
3318	 51.53	0	4061767..4063200	-	477	192359811	-	CJA_3387	-	high affinity choline transporter
3319	 47.37	0	4063314..4063598	-	94	192358907	-	CJA_3388	-	hypothetical protein
3320	 53.27	0	4063605..4063925	-	106	192362073	-	CJA_3389	-	PA5285-like protein
3321	 50.15	0	4064326..4064664	-	112	192361217	-	CJA_3390	-	Nitrogen regulatory protein P-II
3322	 51.14	0	4064847..4066115	-	422	192360328	-	CJA_3391	-	ammonium transporter
3323	 53.39	0	4066147..4066485	-	112	192362245	-	CJA_3392	-	Nitrogen regulatory protein P-II
3324	 52.14	0	4066894..4067127	+	77	192360696	-	CJA_3393	-	hypothetical protein
3325	 59.79	+1	4067142..4068755	+	537	192359858	-	CJA_3394	-	Mg chelatase homolog
3326	 56.70	0	4068757..4070472	-	571	192359035	-	CJA_3395	-	EAL domain protein
3327	 56.12	0	4070690..4072708	+	672	192362002	rep	CJA_3396	-	ATP-dependent DNA helicase Rep
3328	 57.14	0	4072809..4073249	-	146	192362206	-	CJA_3397	-	Cytochrome c5
3329	 52.48	0	4073447..4075504	+	685	192361268	prsK	CJA_3398	-	putative PEP-CTERM system histidine kinase
3330	 52.54	0	4075501..4076895	+	464	192359614	prsR	CJA_3399	-	putative PEP-CTERM system response regulator
3331	 53.19	0	4076905..4077045	-	46	192360425	-	CJA_3400	-	hypothetical protein
3332	 50.40	0	4077157..4077900	+	247	192361427	-	CJA_3402	-	putative lipoprotein
3333	 53.15	0	4077240..4077350	-	36	192361763	-	CJA_3401	-	hypothetical protein
3334	 52.23	0	4078218..4078958	+	246	192360814	-	CJA_3403	-	PEP-CTERM putative exosortase interaction domain protein
3335	 47.68	0	4079167..4080546	+	459	192361630	-	CJA_3404	-	eight transmembrane protein EpsH (proposed exosortase)
3336	 45.61	-1	4080557..4081696	+	379	192359179	gt2M	CJA_3405	-	glycosyl transferase, putative, gt2M
3337	 46.96	0	4081708..4083057	+	449	192360068	cAPK	CJA_3406	-	capK related-protein
3338	 46.99	0	4083045..4083959	+	304	192360721	gt2I	CJA_3407	-	glycosyl transferase, putative, gt2I
3339	 47.96	0	4083960..4084964	+	334	192361787	pda4E	CJA_3408	-	polysaccharide deacetylase protein, putative, pda4E
3340	 50.12	0	4085014..4086669	+	551	192359408	-	CJA_3409	-	hypothetical protein
3341	 54.11	0	4086666..4087796	+	376	192360155	gt4B	CJA_3410	-	glycosyl transferase, putative, gt4B
3342	 52.56	0	4087875..4088909	+	344	192361549	gt4A	CJA_3411	-	glycosyl transferase, putative, gt4A
3343	 44.19	-1	4088906..4090195	+	429	192359666	-	CJA_3412	-	O-antigen polymerase family protein
3344	 48.98	0	4090258..4091184	+	308	192361642	-	CJA_3413	-	glycosyl transferase, group 1 family protein domain protein
3345	 46.83	0	4091305..4092378	+	357	192361039	-	CJA_3414	-	hypothetical protein
3346	 35.34	-2	4092553..4093746	-	397	192359925	-	CJA_3415	-	hypothetical protein
3347	 34.09	-2	4093736..4094656	-	306	192360326	gt2L	CJA_3416	-	glycosyl transferase, putative, gt2L
3348	 34.38	-2	4094660..4096189	-	509	192362089	-	CJA_3417	-	polysaccharide biosynthesis family protein
3349	 45.45	-1	4096186..4097208	-	340	192362475	-	CJA_3418	-	hypothetical protein
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.