IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3197	 55.56	0	3906523..3906747	-	74	192359660	-	CJA_3266	-	putative lipoprotein
3198	 56.71	0	3906744..3907235	-	163	192362411	-	CJA_3267	-	putative thiol:disulfide interchange protein DsbE
3199	 53.59	0	3907134..3907286	+	50	192359443	-	CJA_3268	-	hypothetical protein
3200	 52.16	0	3907306..3907953	-	215	192360319	-	CJA_3269	-	hypothetical protein
3201	 59.03	+1	3907908..3908666	+	252	192362389	-	CJA_3271	-	hypothetical protein
3202	 59.16	+1	3907923..3908708	-	261	192359456	-	CJA_3270	-	hypothetical protein
3203	 60.20	+1	3908731..3911622	-	963	192361517	-	CJA_3272	-	hypothetical protein
3204	 48.68	0	3912340..3912567	-	75	192359928	-	CJA_3273	-	hypothetical protein
3205	 60.43	+1	3912775..3914040	+	421	192361326	-	CJA_3274	-	hypothetical protein
3206	 61.68	+1	3914042..3916570	+	842	192361721	-	CJA_3275	-	putative lipoprotein
3207	 59.75	+1	3916591..3918180	+	529	192358808	-	CJA_3276	-	hypothetical protein
3208	 52.55	0	3918318..3919061	+	247	192359577	-	CJA_3277	-	hypothetical protein
3209	 45.32	-1	3919292..3920542	+	416	192360887	-	CJA_3278	-	transcriptional regulator, AraC family domain protein
3210	 50.64	0	3920850..3922502	+	550	192359338	xyn5A	CJA_3279	-	endo-1,4-beta-xylanase, putative, xyn5A
3211	 53.11	0	3922705..3924504	+	599	192360656	xyn10B	CJA_3280	-	endo-1,4-beta-xylanase, xyn10B
3212	 53.23	0	3924630..3926489	+	619	192361477	abf62A	CJA_3281	-	alpha-L-arabinofuranosidase, abf62A
3213	 55.15	0	3926638..3928365	+	575	192361809	fee1B	CJA_3282	-	ferruloyl esterase, putative, fee1B
3214	 45.24	-1	3928444..3928611	+	55	192358891	-	CJA_3283	-	hypothetical protein
3215	 42.14	-1	3928767..3929936	+	389	192359220	-	CJA_3284	-	transcriptional regulator, AraC family
3216	 49.55	0	3930177..3930287	+	36	192359489	-	CJA_3285	-	hypothetical protein
3217	 51.29	0	3930449..3933499	+	1016	192360834	ebg98	CJA_3286	-	endo-beta-galactosidase, putative, ebg98A
3218	 53.34	0	3933588..3935336	+	582	192361373	fee1A	CJA_3287	-	ferruloyl esterase, fee1A
3219	 55.20	0	3935460..3936401	-	313	192362212	xerC	CJA_3288	-	tyrosine recombinase XerC
3220	 57.33	0	3936423..3937118	-	231	192359180	-	CJA_3289	-	hypothetical protein
3221	 58.48	+1	3937129..3937959	-	276	192360012	dapF	CJA_3290	-	diaminopimelate epimerase
3222	 57.13	0	3937979..3939226	-	415	192360548	lysA	CJA_3291	-	diaminopimelate decarboxylase
3223	 57.58	+1	3939271..3939468	-	65	192361617	-	CJA_3292	-	hypothetical protein
3224	 56.27	0	3939508..3940728	-	406	192362267	-	CJA_3293	-	Sigma-54 interaction domain protein
3225	 55.40	0	3940844..3941917	+	357	192361386	-	CJA_3294	-	FHA domain protein
3226	 50.58	0	3941914..3944592	+	892	192360667	-	CJA_3295	-	putative serine/threonine protein kinase
3227	 48.24	0	3944628..3945137	-	169	192362433	-	CJA_3296	-	hypothetical protein
3228	 48.15	0	3945166..3945327	+	53	192359040	-	CJA_3297	-	hypothetical protein
3229	 52.98	0	3945339..3947567	-	742	192359832	-	CJA_3298	-	putative TonB-dependent receptor
3230	 46.82	0	3947578..3948756	-	392	192359999	-	CJA_3299	-	putative transcriptional regulator
3231	 56.55	0	3948944..3949111	+	55	192361040	cbp6C	CJA_3300	-	carbohydrate binding protein, putative, cbp6C
3232	 50.57	0	3949182..3949355	-	57	192359419	-	CJA_3301	-	hypothetical protein
3233	 55.56	0	3949352..3949486	-	44	192360462	-	CJA_3302	-	hypothetical protein
3234	 55.87	0	3949483..3949797	-	104	192359913	-	CJA_3303	-	hypothetical protein
3235	 59.23	+1	3950051..3952753	+	900	192359744	-	CJA_3304	-	TonB-dependent receptor
3236	 61.95	+1	3952859..3955489	+	876	192359137	glu5A	CJA_3305	-	glucan exo-1,3-beta glucosidase, putative, glu5A
3237	 56.48	0	3955656..3957098	+	480	192361845	gly30A	CJA_3306	-	glycoside hydrolase family 30, gly30A
3238	 58.60	+1	3957249..3958451	-	400	192361274	manC	CJA_3307	-	Mannose-6-phosphate isomerase-like protein
3239	 56.46	0	3958592..3958738	+	48	192361083	-	CJA_3308	-	hypothetical protein
3240	 57.20	0	3958900..3960219	-	439	192361921	-	CJA_3309	-	MATE efflux family protein
3241	 44.57	-1	3961652..3968389	-	2245	192358983	-	CJA_3310	-	RHS Repeat family
3242	 39.48	-2	3968493..3969338	-	281	192359795	-	CJA_3311	-	FG-GAP repeat domain protein
3243	 53.60	0	3969471..3970442	-	323	192361719	-	CJA_3312	-	TonB family C-terminal domain protein
3244	 53.07	0	3970444..3970965	-	173	192360985	-	CJA_3313	-	putative adventurous gliding motility protein S
3245	 49.63	0	3970962..3971507	-	181	192362279	-	CJA_3314	-	hypothetical protein
3246	 51.72	0	3971564..3972259	-	231	192358852	aglR	CJA_3315	-	adventurous gliding motility protein R
3247	 54.99	0	3972292..3972642	-	116	192360154	-	CJA_3316	-	hypothetical protein
3248	 53.33	0	3972632..3973366	-	244	192360457	-	CJA_3317	-	putative TPR domain protein
3249	 54.68	0	3973353..3976247	-	964	192361757	-	CJA_3318	-	tetratricopeptide repeat domain protein
3250	 54.06	0	3976244..3978226	-	660	192359437	-	CJA_3319	-	hypothetical protein
3251	 52.11	0	3978226..3978747	-	173	192361061	-	CJA_3320	-	hypothetical protein
3252	 53.60	0	3979073..3980059	-	328	192362049	-	CJA_3321	-	hypothetical protein
3253	 53.30	0	3980112..3980687	-	191	192362149	-	CJA_3322	-	hypothetical protein
3254	 54.87	0	3980966..3981448	-	160	192359702	gspM	CJA_3323	-	General secretion pathway protein M
3255	 54.67	0	3981459..3982733	-	424	192358999	gspL	CJA_3324	-	General secretion pathway protein L
3256	 52.85	0	3982828..3983985	-	385	192360242	gspK	CJA_3325	-	General secretion pathway protein K
3257	 54.49	0	3983954..3984643	-	229	192361501	gspJ	CJA_3326	-	General secretion pathway protein J
3258	 52.47	0	3984624..3985109	-	161	192361946	gspI	CJA_3327	-	General secretion pathway protein I
3259	 55.31	0	3985109..3985786	-	225	192359446	gspH	CJA_3328	-	General secretion pathway protein H
3260	 51.75	0	3985740..3986195	-	151	192360788	gspG	CJA_3329	-	General secretion pathway protein G
3261	 56.23	0	3986232..3987467	-	411	192361623	gspF	CJA_3330	-	General secretion pathway protein F
3262	 57.21	0	3987483..3989057	-	524	192360332	gspE	CJA_3331	-	General secretion pathway protein E
3263	 53.91	0	3989061..3991106	-	681	192361327	gspD	CJA_3332	-	General secretion pathway protein D
3264	 56.93	0	3991122..3992261	-	379	192360107	gspC	CJA_3333	-	General secretion pathway protein C
3265	 57.03	0	3992776..3993024	+	82	192361149	xseB	CJA_3334	-	exodeoxyribonuclease VII, small subunit
3266	 60.14	+1	3993021..3993908	+	295	192362196	ispA	CJA_3335	-	geranyltranstransferase
3267	 58.71	+1	3994013..3995923	+	636	192359149	dxs	CJA_3336	-	1-deoxy-D-xylulose-5-phosphate synthase
3268	 54.57	0	3996014..3997831	-	605	192359998	cel5E	CJA_3337	-	cellulase, putative, cel5E
3269	 56.23	0	3998478..3999770	+	430	192360830	man5A	CJA_3338	-	endo- 1,4-beta-mannanase man5A
3270	 55.87	0	4000143..4001003	-	286	192360892	cae1C	CJA_3339	-	carbohydrate esterase, putative, cae1C
3271	 57.39	0	4001019..4002128	-	369	192361685	adhC	CJA_3340	-	alcohol dehydrogenase C
3272	 59.44	+1	4002279..4003178	+	299	192360613	-	CJA_3341	-	transcriptional regulator, LysR family
3273	 52.92	0	4003211..4004425	-	404	192361474	nupG	CJA_3342	-	nucleoside-transport system protein
3274	 59.06	+1	4004593..4005735	-	380	192361579	-	CJA_3343	-	Oxidoreductase family, NAD-binding Rossmann fold domain protein
3275	 56.13	0	4005738..4006790	-	350	192358811	-	CJA_3344	-	AP endonuclease family 2 C terminus family
3276	 51.65	0	4006972..4007670	-	232	192358826	-	CJA_3345	-	CAAX amino terminal protease family protein
3277	 56.68	0	4007848..4008969	-	373	192359767	dnaJ	CJA_3346	-	chaperone protein DnaJ
3278	 53.77	0	4009089..4011011	-	640	192361066	dnaK	CJA_3347	-	chaperone protein DnaK
3279	 59.20	+1	4011189..4011764	-	191	192361899	grpE	CJA_3348	-	co-chaperone GrpE
3280	 35.42	-2	4012030..4012125	+	31	192360441	-	CJA_3349	-	hypothetical protein
3281	 56.67	0	4012225..4013844	+	539	192361242	-	CJA_3350	-	methyl-accepting chemotaxis protein
3282	 60.31	+1	4013924..4015591	+	555	192358991	recN	CJA_3351	-	DNA repair protein RecN
3283	 48.42	0	4015666..4016076	-	136	192359556	fur	CJA_3352	-	transcriptional regulator Fur
3284	 51.41	0	4016107..4016604	+	165	192360954	-	CJA_3353	-	Outer membrane lipoprotein omlA precursor
3285	 56.57	0	4016678..4018321	-	547	192359905	-	CJA_3354	-	GGDEF domain protein
3286	 59.68	+1	4018524..4020941	+	805	192360118	-	CJA_3355	-	sensory box/GGDEF family protein
3287	 54.38	0	4021047..4022267	+	406	192359047	-	CJA_3357	-	HD domain protein
3288	 55.90	0	4022261..4022650	-	129	192361926	-	CJA_3356	-	response regulator
3289	 53.19	0	4022647..4024932	-	761	192361097	-	CJA_3358	-	two-component hybrid sensor and regulator
3290	 55.95	0	4025046..4029011	-	1321	192362033	-	CJA_3359	-	two-component hybrid sensor and regulator
3291	 55.56	0	4029154..4029477	-	107	192360900	-	CJA_3360	-	Protein yfjF
3292	 54.94	0	4029504..4029938	-	144	192360500	-	CJA_3361	-	hypothetical protein
3293	 55.21	0	4030116..4030595	+	159	192358965	smpB	CJA_3362	-	SsrA-binding protein
3294	 59.41	+1	4030596..4031642	-	348	192358959	-	CJA_3363	-	transcriptional regulator, LuxR family
3295	 51.67	0	4031760..4031879	-	39	192361935	-	CJA_3364	-	hypothetical protein
3296	 62.83	+1	4031925..4032680	+	251	192362327	-	CJA_3365	-	hydrolase, alpha/beta fold family
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.