IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3159	 45.14	-1	3854886..3855461	-	191	192362296	-	CJA_3228	-	hypothetical protein
3160	 52.47	0	3856502..3856966	-	154	192361861	-	CJA_3229	-	hypothetical protein
3161	 44.79	-1	3857044..3857139	-	31	192359166	-	CJA_3230	-	hypothetical protein
3162	 54.90	0	3857323..3857424	+	33	192362374	-	CJA_3232	-	hypothetical protein
3163	 57.60	+1	3857409..3858731	-	440	192360230	-	CJA_3231	-	PepSY-associated TM helix family
3164	 54.82	0	3858811..3861072	-	753	192362325	-	CJA_3233	-	TonB-dependent receptor protein
3165	 58.71	+1	3861238..3862644	-	468	192359708	-	CJA_3234	-	transporter, solute:sodium symporter (SSS) family
3166	 57.44	0	3862665..3862859	-	64	192358968	-	CJA_3235	-	hypothetical protein
3167	 51.26	0	3862959..3863354	-	131	192362373	ectC	CJA_3236	-	Ectoine synthase
3168	 53.32	0	3863373..3864653	-	426	192361123	ectB	CJA_3237	-	diaminobutyrate--2-oxoglutarate aminotransferase
3169	 54.83	0	3864783..3865382	-	199	192359769	-	CJA_3238	-	L-2,4-diaminobutyric acid acetyltransferase
3170	 29.76	-2	3865409..3865576	+	55	192362078	-	CJA_3239	-	hypothetical protein
3171	 60.56	+1	3865625..3866164	+	179	192360984	-	CJA_3240	-	transcriptional regulator, MarR family
3172	 37.32	-2	3866892..3867317	-	141	192359475	-	CJA_3241	-	hypothetical protein
3173	 47.22	0	3867404..3868555	-	383	192358862	-	CJA_3242	-	ISCja2, transposase
3174	 45.87	-1	3868712..3871384	-	890	192362217	-	CJA_3243	-	mannosidase-like protein
3175	 45.80	-1	3871436..3874588	-	1050	192360308	-	CJA_3244	-	TonB-dependent receptor
3176	 50.71	0	3874667..3874948	-	93	192359830	-	CJA_3245	-	hypothetical protein
3177	 53.60	0	3875307..3878306	-	999	192358814	-	CJA_3246	-	TonB-dependent receptor
3178	 50.80	0	3878851..3881466	-	871	192361983	amy13H	CJA_3247	-	alpha-amylase, putative, amy13H
3179	 50.96	0	3881837..3884287	+	816	192360939	agd31B	CJA_3248	-	alpha-glucosidase, putative, adg31B
3180	 48.00	0	3884395..3886092	-	565	192362173	cgl13A	CJA_3249	-	cyclomaltodextrin glucanotransferase, putative, cgt13A
3181	 48.67	0	3886169..3887368	-	399	192360958	-	CJA_3250	-	3-dehydroquinate synthase
3182	 48.15	0	3887375..3888076	-	233	192360533	-	CJA_3251	-	Phytanoyl-CoA dioxygenase (PhyH) superfamily
3183	 47.16	0	3888109..3889359	-	416	192359269	pbg4A	CJA_3252	-	6-phospho-beta-glucosidase, putative, pbg4A
3184	 51.01	0	3889352..3890341	-	329	192358866	-	CJA_3253	-	putative glucokinase
3185	 45.42	-1	3890354..3891412	-	352	192362031	glgC	CJA_3254	-	Glucose-1-phosphate adenylyltransferase
3186	 50.44	0	3891425..3893248	-	607	192361968	gt5B	CJA_3255	-	glycosyl transferase, putative, gt5B
3187	 49.48	0	3893386..3894933	-	515	192361398	-	CJA_3256	-	hypothetical protein
3188	 54.73	0	3894930..3896228	-	432	192360256	-	CJA_3257	-	homolog of 4-aminobutyrate aminotransferase GabT
3189	 51.05	0	3896225..3896557	-	110	192359434	-	CJA_3258	-	hypothetical protein
3190	 50.56	0	3896581..3897114	-	177	192360053	-	CJA_3259	-	hypothetical protein
3191	 50.06	0	3897206..3898903	-	565	192360355	-	CJA_3260	-	ABC transporter, ATP-binding protein
3192	 50.44	0	3898900..3900711	-	603	192361756	-	CJA_3261	-	ABC transporter domain protein
3193	 50.64	0	3900708..3901649	-	313	192360675	-	CJA_3262	-	kinase, pfkB family
3194	 49.94	0	3902006..3904636	+	876	192361489	cgt13B	CJA_3263	-	cyclomaltodextrin glucanotransferase, putative, cgt13B
3195	 52.46	0	3904707..3905255	-	182	192360876	-	CJA_3264	-	putative glutathione peroxidase
3196	 52.66	0	3905373..3906536	-	387	192359816	-	CJA_3265	-	hypothetical protein
3197	 55.56	0	3906523..3906747	-	74	192359660	-	CJA_3266	-	putative lipoprotein
3198	 56.71	0	3906744..3907235	-	163	192362411	-	CJA_3267	-	putative thiol:disulfide interchange protein DsbE
3199	 53.59	0	3907134..3907286	+	50	192359443	-	CJA_3268	-	hypothetical protein
3200	 52.16	0	3907306..3907953	-	215	192360319	-	CJA_3269	-	hypothetical protein
3201	 59.03	+1	3907908..3908666	+	252	192362389	-	CJA_3271	-	hypothetical protein
3202	 59.16	+1	3907923..3908708	-	261	192359456	-	CJA_3270	-	hypothetical protein
3203	 60.20	+1	3908731..3911622	-	963	192361517	-	CJA_3272	-	hypothetical protein
3204	 48.68	0	3912340..3912567	-	75	192359928	-	CJA_3273	-	hypothetical protein
3205	 60.43	+1	3912775..3914040	+	421	192361326	-	CJA_3274	-	hypothetical protein
3206	 61.68	+1	3914042..3916570	+	842	192361721	-	CJA_3275	-	putative lipoprotein
3207	 59.75	+1	3916591..3918180	+	529	192358808	-	CJA_3276	-	hypothetical protein
3208	 52.55	0	3918318..3919061	+	247	192359577	-	CJA_3277	-	hypothetical protein
3209	 45.32	-1	3919292..3920542	+	416	192360887	-	CJA_3278	-	transcriptional regulator, AraC family domain protein
3210	 50.64	0	3920850..3922502	+	550	192359338	xyn5A	CJA_3279	-	endo-1,4-beta-xylanase, putative, xyn5A
3211	 53.11	0	3922705..3924504	+	599	192360656	xyn10B	CJA_3280	-	endo-1,4-beta-xylanase, xyn10B
3212	 53.23	0	3924630..3926489	+	619	192361477	abf62A	CJA_3281	-	alpha-L-arabinofuranosidase, abf62A
3213	 55.15	0	3926638..3928365	+	575	192361809	fee1B	CJA_3282	-	ferruloyl esterase, putative, fee1B
3214	 45.24	-1	3928444..3928611	+	55	192358891	-	CJA_3283	-	hypothetical protein
3215	 42.14	-1	3928767..3929936	+	389	192359220	-	CJA_3284	-	transcriptional regulator, AraC family
3216	 49.55	0	3930177..3930287	+	36	192359489	-	CJA_3285	-	hypothetical protein
3217	 51.29	0	3930449..3933499	+	1016	192360834	ebg98	CJA_3286	-	endo-beta-galactosidase, putative, ebg98A
3218	 53.34	0	3933588..3935336	+	582	192361373	fee1A	CJA_3287	-	ferruloyl esterase, fee1A
3219	 55.20	0	3935460..3936401	-	313	192362212	xerC	CJA_3288	-	tyrosine recombinase XerC
3220	 57.33	0	3936423..3937118	-	231	192359180	-	CJA_3289	-	hypothetical protein
3221	 58.48	+1	3937129..3937959	-	276	192360012	dapF	CJA_3290	-	diaminopimelate epimerase
3222	 57.13	0	3937979..3939226	-	415	192360548	lysA	CJA_3291	-	diaminopimelate decarboxylase
3223	 57.58	+1	3939271..3939468	-	65	192361617	-	CJA_3292	-	hypothetical protein
3224	 56.27	0	3939508..3940728	-	406	192362267	-	CJA_3293	-	Sigma-54 interaction domain protein
3225	 55.40	0	3940844..3941917	+	357	192361386	-	CJA_3294	-	FHA domain protein
3226	 50.58	0	3941914..3944592	+	892	192360667	-	CJA_3295	-	putative serine/threonine protein kinase
3227	 48.24	0	3944628..3945137	-	169	192362433	-	CJA_3296	-	hypothetical protein
3228	 48.15	0	3945166..3945327	+	53	192359040	-	CJA_3297	-	hypothetical protein
3229	 52.98	0	3945339..3947567	-	742	192359832	-	CJA_3298	-	putative TonB-dependent receptor
3230	 46.82	0	3947578..3948756	-	392	192359999	-	CJA_3299	-	putative transcriptional regulator
3231	 56.55	0	3948944..3949111	+	55	192361040	cbp6C	CJA_3300	-	carbohydrate binding protein, putative, cbp6C
3232	 50.57	0	3949182..3949355	-	57	192359419	-	CJA_3301	-	hypothetical protein
3233	 55.56	0	3949352..3949486	-	44	192360462	-	CJA_3302	-	hypothetical protein
3234	 55.87	0	3949483..3949797	-	104	192359913	-	CJA_3303	-	hypothetical protein
3235	 59.23	+1	3950051..3952753	+	900	192359744	-	CJA_3304	-	TonB-dependent receptor
3236	 61.95	+1	3952859..3955489	+	876	192359137	glu5A	CJA_3305	-	glucan exo-1,3-beta glucosidase, putative, glu5A
3237	 56.48	0	3955656..3957098	+	480	192361845	gly30A	CJA_3306	-	glycoside hydrolase family 30, gly30A
3238	 58.60	+1	3957249..3958451	-	400	192361274	manC	CJA_3307	-	Mannose-6-phosphate isomerase-like protein
3239	 56.46	0	3958592..3958738	+	48	192361083	-	CJA_3308	-	hypothetical protein
3240	 57.20	0	3958900..3960219	-	439	192361921	-	CJA_3309	-	MATE efflux family protein
3241	 44.57	-1	3961652..3968389	-	2245	192358983	-	CJA_3310	-	RHS Repeat family
3242	 39.48	-2	3968493..3969338	-	281	192359795	-	CJA_3311	-	FG-GAP repeat domain protein
3243	 53.60	0	3969471..3970442	-	323	192361719	-	CJA_3312	-	TonB family C-terminal domain protein
3244	 53.07	0	3970444..3970965	-	173	192360985	-	CJA_3313	-	putative adventurous gliding motility protein S
3245	 49.63	0	3970962..3971507	-	181	192362279	-	CJA_3314	-	hypothetical protein
3246	 51.72	0	3971564..3972259	-	231	192358852	aglR	CJA_3315	-	adventurous gliding motility protein R
3247	 54.99	0	3972292..3972642	-	116	192360154	-	CJA_3316	-	hypothetical protein
3248	 53.33	0	3972632..3973366	-	244	192360457	-	CJA_3317	-	putative TPR domain protein
3249	 54.68	0	3973353..3976247	-	964	192361757	-	CJA_3318	-	tetratricopeptide repeat domain protein
3250	 54.06	0	3976244..3978226	-	660	192359437	-	CJA_3319	-	hypothetical protein
3251	 52.11	0	3978226..3978747	-	173	192361061	-	CJA_3320	-	hypothetical protein
3252	 53.60	0	3979073..3980059	-	328	192362049	-	CJA_3321	-	hypothetical protein
3253	 53.30	0	3980112..3980687	-	191	192362149	-	CJA_3322	-	hypothetical protein
3254	 54.87	0	3980966..3981448	-	160	192359702	gspM	CJA_3323	-	General secretion pathway protein M
3255	 54.67	0	3981459..3982733	-	424	192358999	gspL	CJA_3324	-	General secretion pathway protein L
3256	 52.85	0	3982828..3983985	-	385	192360242	gspK	CJA_3325	-	General secretion pathway protein K
3257	 54.49	0	3983954..3984643	-	229	192361501	gspJ	CJA_3326	-	General secretion pathway protein J
3258	 52.47	0	3984624..3985109	-	161	192361946	gspI	CJA_3327	-	General secretion pathway protein I
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.