IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3067	 61.32	+1	3722505..3723233	-	242	192362005	-	CJA_3136	-	hypothetical protein
3068	 59.88	+1	3723226..3723873	-	215	192358886	glob1	CJA_3137	-	metallo-beta-lactamase superfamily protein
3069	 58.22	+1	3723931..3724581	-	216	192360323	-	CJA_3138	-	hypothetical protein
3070	 54.54	0	3724666..3725679	-	337	192360917	cbp33/10B	CJA_3139	-	chitin binding protein, putative, cbp33/10B
3071	 54.65	0	3726695..3727543	+	282	192359308	psd	CJA_3140	-	phosphatidylserine decarboxylase
3072	 50.53	0	3727613..3728368	-	251	192360394	-	CJA_3141	-	Integral membrane protein TerC family superfamily
3073	 46.67	-1	3728381..3728500	-	39	192359876	-	CJA_3142	-	hypothetical protein
3074	 54.17	0	3728525..3729892	-	455	192362497	-	CJA_3143	-	HD domain protein
3075	 58.92	+1	3730103..3731173	-	356	192360733	hemE	CJA_3144	-	uroporphyrinogen decarboxylase
3076	 56.76	0	3731268..3732851	-	527	192361840	-	CJA_3145	-	Na/Pi cotransporter family protein
3077	 55.37	0	3732904..3734319	-	471	192362482	gltD	CJA_3146	-	glutamate synthase, small subunit
3078	 57.58	+1	3734342..3738796	-	1484	192361435	-	CJA_3147	-	glutamate synthase large chain precursor
3079	 57.30	0	3739053..3739511	-	152	192359831	-	CJA_3148	-	putative lipoprotein
3080	 60.12	+1	3739640..3740770	+	376	192358791	-	CJA_3149	-	hypothetical protein
3081	 55.16	0	3740776..3742287	-	503	192360965	-	CJA_3150	-	tryptophan halogenase
3082	 58.28	+1	3742312..3743253	-	313	192359878	-	CJA_3151	-	transcriptional regulator, LysR family
3083	 58.35	+1	3743474..3744784	+	436	192360400	-	CJA_3152	-	cation:proton antiporter
3084	 50.90	0	3744738..3745853	+	371	192359356	-	CJA_3153	-	PEP-CTERM putative exosortase interaction domain protein
3085	 59.86	+1	3745957..3746103	-	48	192358828	-	CJA_3154	-	hypothetical protein
3086	 55.38	0	3746242..3747012	+	256	192360752	-	CJA_3155	-	hypothetical protein
3087	 51.63	0	3747043..3748545	+	500	192362047	gt39A	CJA_3156	-	glycosyl transferase, putative, gt39A
3088	 51.61	0	3748548..3749105	+	185	192359296	-	CJA_3157	-	putative serine protease
3089	 51.20	0	3749171..3749797	-	208	192360339	-	CJA_3158	-	hypothetical protein
3090	 58.75	+1	3749844..3751901	-	685	192362247	-	CJA_3159	-	thiol-disulfide interchange protein DsbD homolog
3091	 45.07	-1	3752066..3755056	-	996	192361885	-	CJA_3160	-	tonB dependent receptor-related protein
3092	 47.27	0	3755132..3759652	-	1506	192358848	pul13B	CJA_3161	-	pullulanase, putative, pul13B
3093	 50.66	0	3760104..3761384	-	426	192359893	-	CJA_3162	-	hypothetical protein
3094	 55.79	0	3761381..3762640	-	419	192361799	-	CJA_3163	-	NAD(FAD)-utilizing dehydrogenase
3095	 58.05	+1	3762709..3764727	-	672	192359505	-	CJA_3164	-	sialic acid-specific 9-O-acetylesterase
3096	 55.34	0	3764844..3765152	-	102	192360868	-	CJA_3165	-	hypothetical protein
3097	 52.78	0	3765245..3768124	-	959	192360038	-	CJA_3166	-	peptidase, M16 (pitrilysin) family
3098	 59.76	+1	3768235..3768972	-	245	192359143	-	CJA_3167	-	hypothetical protein
3099	 53.94	0	3769077..3769241	+	54	192361181	-	CJA_3168	-	hypothetical protein
3100	 57.44	0	3769308..3771638	+	776	192360642	-	CJA_3169	-	S1 RNA binding domain protein
3101	 51.58	0	3771798..3772619	+	273	192359492	-	CJA_3170	-	orotidine 5'-phosphate decarboxylase
3102	 50.44	0	3772730..3773068	+	112	192361784	phnA	CJA_3171	-	alkylphosphonate utilization operon protein PhnA
3103	 51.61	0	3773111..3773296	-	61	192360676	-	CJA_3172	-	hypothetical protein
3104	 64.27	+2	3773297..3775636	-	779	192361823	-	CJA_3173	-	putative lipoprotein
3105	 65.57	+2	3775728..3778001	-	757	192360764	-	CJA_3174	-	putative arylsulfatase
3106	 66.67	+2	3777876..3777986	+	36	192360272	-	CJA_3175	-	hypothetical protein
3107	 68.25	+2	3778004..3780280	-	758	192361111	-	CJA_3176	-	tetratricopeptide repeat domain protein
3108	 66.61	+2	3780469..3782265	-	598	192362332	-	CJA_3177	-	ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein
3109	 63.57	+2	3782265..3782942	-	225	192359370	-	CJA_3178	-	response regulator
3110	 48.80	0	3783103..3783600	-	165	192361008	-	CJA_3179	-	hypothetical protein
3111	 42.56	-1	3783660..3783995	-	111	192362040	-	CJA_3180	-	hypothetical protein
3112	 52.27	0	3784211..3784342	-	43	192358789	-	CJA_3181	-	hypothetical protein
3113	 38.49	-2	3784598..3785179	-	193	192359932	-	CJA_3182	-	putative PAP2 superfamily
3114	 50.50	0	3785183..3785584	+	133	192360463	ccdA	CJA_3183	-	CcdB antidote CcdA
3115	 45.41	-1	3786635..3788191	-	518	192359258	-	CJA_3184	-	Transposase IS4 family
3116	 48.47	0	3788975..3790183	-	402	192360286	-	CJA_3185	-	putative maturase
3117	 45.06	-1	3792839..3793810	+	323	192361592	int	CJA_3186	-	integrase
3118	 61.68	+1	3793915..3795297	+	460	192362424	-	CJA_3187	-	Outer membrane efflux protein domain protein
3119	 66.47	+2	3795294..3796301	+	335	192358946	-	CJA_3188	-	HlyD family secretion protein
3120	 63.83	+2	3796286..3797482	+	398	192359734	-	CJA_3189	-	hypothetical protein
3121	 60.19	+1	3797479..3798621	+	380	192361002	-	CJA_3190	-	ABC-2 type transporter domain protein
3122	 51.30	0	3798618..3799157	+	179	192361851	-	CJA_3191	-	hypothetical protein
3123	 51.35	0	3799224..3799556	+	110	192361037	qacG	CJA_3192	-	quaternary ammonium compound resistance protein
3124	 52.45	0	3799751..3802669	+	972	192361909	-	CJA_3193	-	hypothetical protein
3125	 55.43	0	3802986..3805664	-	892	192359582	clpB	CJA_3194	-	ClpB
3126	 47.66	0	3805746..3807029	-	427	192360582	-	CJA_3195	-	putative Macrolide-efflux protein
3127	 48.28	0	3807058..3807813	-	251	192360767	-	CJA_3196	-	microcystin synthetase associated thioesterase
3128	 46.43	-1	3807816..3809090	-	424	192361750	gt1C	CJA_3197	-	glycosyl transferase, putative, gt1C
3129	 49.71	0	3809114..3816904	-	2596	192360187	mxaD	CJA_3198	-	MxaD
3130	 45.00	-1	3817334..3818713	+	459	192361330	-	CJA_3200	-	hypothetical protein
3131	 42.59	-1	3817502..3817717	-	71	192360738	-	CJA_3199	-	hypothetical protein
3132	 43.00	-1	3818800..3820278	+	492	192359089	-	CJA_3201	-	hypothetical protein
3133	 39.81	-2	3820416..3821171	+	251	192362328	-	CJA_3202	-	hypothetical protein
3134	 46.91	0	3821327..3822055	+	242	192359814	-	CJA_3203	-	hypothetical protein
3135	 55.60	0	3822133..3822900	-	255	192361618	-	CJA_3204	-	YfiH
3136	 57.11	0	3822906..3823868	-	320	192360779	-	CJA_3205	-	pseudouridine synthase, RluA family subfamily
3137	 53.96	0	3823947..3824930	+	327	192359694	-	CJA_3206	-	competence protein ComL
3138	 54.25	0	3824981..3826663	-	560	192362224	adgA	CJA_3207	-	glutamine-dependent NAD+ synthetase signal peptide protein
3139	 48.29	0	3826810..3828480	+	556	192361351	pilS	CJA_3208	-	sensor kinase
3140	 47.65	0	3828504..3829907	+	467	192360048	pilR	CJA_3209	-	PilR
3141	 41.44	-1	3830044..3830475	-	143	192359209	-	CJA_3210	-	type IV pilin
3142	 43.16	-1	3830476..3834924	-	1482	192361698	-	CJA_3211	-	putative fimbrial protein
3143	 41.81	-1	3835546..3836595	-	349	192359215	pilW	CJA_3212	-	type 4 fimbrial biogenesis protein PilW
3144	 45.95	-1	3837836..3838366	+	176	192361695	fimT	CJA_3213	-	pre-pilin like leader sequence
3145	 54.29	0	3838370..3839314	-	314	192360516	ispH	CJA_3214	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
3146	 49.68	0	3839317..3839781	-	154	192361591	-	CJA_3215	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
3147	 50.68	0	3839759..3840271	-	170	192362161	lspA	CJA_3216	-	signal peptidase II
3148	 53.31	0	3840282..3843089	-	935	192359410	ileS	CJA_3217	-	isoleucyl-tRNA synthetase
3149	 56.23	0	3843086..3844120	-	344	192359046	ribF	CJA_3218	-	riboflavin biosynthesis protein RibF
3150	 58.63	+1	3844192..3845796	-	534	192361843	mviN	CJA_3219	-	integral membrane protein MviN
3151	 48.89	0	3845821..3846270	+	149	192359342	-	CJA_3220	-	hypothetical protein
3152	 47.39	0	3846669..3847550	+	293	192360583	-	CJA_3221	-	hypothetical protein
3153	 54.30	0	3847577..3848215	-	212	192361223	-	CJA_3222	-	hypothetical protein
3154	 55.37	0	3848253..3850208	-	651	192360975	-	CJA_3223	-	Phytanoyl-CoA dioxygenase (PhyH) family
3155	 52.08	0	3850352..3851626	+	424	192360679	-	CJA_3224	-	Glycerophosphoryl diester phosphodiesterase family
3156	 56.84	0	3851760..3852410	+	216	192360715	-	CJA_3225	-	probable transcriptional regulator arsR family
3157	 52.58	0	3852464..3853819	+	451	192360141	qxtA	CJA_3226	-	quinol oxidase, subunit I
3158	 51.86	0	3853829..3854848	+	339	192359078	-	CJA_3227	-	cytochrome oxidase subunit II superfamily
3159	 45.14	-1	3854886..3855461	-	191	192362296	-	CJA_3228	-	hypothetical protein
3160	 52.47	0	3856502..3856966	-	154	192361861	-	CJA_3229	-	hypothetical protein
3161	 44.79	-1	3857044..3857139	-	31	192359166	-	CJA_3230	-	hypothetical protein
3162	 54.90	0	3857323..3857424	+	33	192362374	-	CJA_3232	-	hypothetical protein
3163	 57.60	+1	3857409..3858731	-	440	192360230	-	CJA_3231	-	PepSY-associated TM helix family
3164	 54.82	0	3858811..3861072	-	753	192362325	-	CJA_3233	-	TonB-dependent receptor protein
3165	 58.71	+1	3861238..3862644	-	468	192359708	-	CJA_3234	-	transporter, solute:sodium symporter (SSS) family
3166	 57.44	0	3862665..3862859	-	64	192358968	-	CJA_3235	-	hypothetical protein
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.