IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2987	 55.45	0	3630203..3630817	-	204	192362141	-	CJA_3056	-	hypothetical protein
2988	 56.88	0	3630821..3631147	-	108	192359073	-	CJA_3057	-	hypothetical protein
2989	 49.49	0	3631154..3631252	-	32	192361634	-	CJA_3058	-	hypothetical protein
2990	 46.76	0	3631300..3631515	-	71	192359297	-	CJA_3059	-	hypothetical protein
2991	 52.08	0	3631675..3633162	+	495	192360302	mopR	CJA_3060	-	MopR
2992	 53.00	0	3633292..3634623	-	443	192360940	xylA	CJA_3061	-	xylose isomerase
2993	 55.20	0	3634666..3636147	-	493	192362034	-	CJA_3062	-	xylulose kinase (xylulokinase)
2994	 54.59	0	3636343..3637203	+	286	192358846	nuhA	CJA_3063	-	Nudix hydrolase
2995	 54.76	0	3637320..3638873	+	517	192360007	xylE	CJA_3064	-	MFS transporter
2996	 52.80	0	3639042..3639380	-	112	192359899	-	CJA_3065	-	hypothetical protein
2997	 52.00	0	3639064..3640884	+	606	192360972	xyn10C	CJA_3066	-	endo-beta-1,4-xylanase, xyn10C
2998	 55.24	0	3640913..3642619	+	568	192361726	gly43J	CJA_3067	-	beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43J
2999	 54.49	0	3642600..3645548	+	982	192361118	-	CJA_3068	-	hypothetical protein
3000	 53.43	0	3645577..3646785	+	402	192362413	rspA	CJA_3069	-	Starvation sensing protein rspA
3001	 51.42	0	3646845..3647972	+	375	192358849	gly43G	CJA_3070	-	beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43G
3002	 49.23	0	3648182..3648766	+	194	192360928	-	CJA_3071	-	putative module of glucan-glucohydrolase
3003	 42.04	-1	3648886..3652353	-	1155	192362075	-	CJA_3072	-	TonB-dependent receptor
3004	 52.47	0	3652659..3653996	-	445	192359362	purA	CJA_3073	-	adenylosuccinate synthetase
3005	 54.58	0	3654004..3655194	-	396	192358954	hisZ	CJA_3074	-	ATP phosphoribosyltransferase, regulatory subunit
3006	 53.25	0	3655200..3655445	-	81	192360416	-	CJA_3075	-	hypothetical protein
3007	 50.80	0	3655548..3656423	-	291	192360991	hflC	CJA_3076	-	HflC protein
3008	 54.76	0	3656423..3657556	-	377	192360411	hflK	CJA_3077	-	HflK protein
3009	 53.74	0	3657584..3658921	-	445	192361241	-	CJA_3078	-	hypothetical protein
3010	 47.57	0	3658955..3659221	-	88	192362520	hfq	CJA_3079	-	Hfq protein
3011	 54.18	0	3659344..3660360	-	338	192358868	miaA	CJA_3080	-	tRNA delta(2)-isopentenylpyrophosphate transferase
3012	 57.10	0	3660364..3662244	-	626	192359923	mutL	CJA_3081	-	DNA mismatch repair protein MutL
3013	 57.16	0	3662241..3663629	-	462	192360903	-	CJA_3082	-	N-acetylmuramoyl-L-alanine amidase
3014	 43.65	-1	3663720..3663845	-	41	192361996	-	CJA_3083	-	hypothetical protein
3015	 43.39	-1	3663914..3664102	-	62	192362219	-	CJA_3084	-	hypothetical protein
3016	 57.14	0	3664107..3666320	-	737	192361865	-	CJA_3085	-	putative sensory box protein
3017	 60.62	+1	3666515..3666994	-	159	192360576	-	CJA_3086	-	conserved hypothetical protein TIGR00150
3018	 65.81	+2	3667004..3668518	-	504	192359898	-	CJA_3087	-	YjeF family protein
3019	 58.56	+1	3668594..3670321	+	575	192359187	-	CJA_3088	-	hypothetical protein
3020	 51.42	0	3670318..3670704	+	128	192361910	-	CJA_3089	-	hypothetical protein
3021	 43.75	-1	3670667..3670762	+	31	192359012	-	CJA_3091	-	hypothetical protein
3022	 50.34	0	3670755..3671483	-	242	192362264	-	CJA_3090	-	hypothetical protein
3023	 48.65	0	3671583..3672359	-	258	192362335	-	CJA_3092	-	hypothetical protein
3024	 53.62	0	3672568..3673755	+	395	192361608	-	CJA_3093	-	iron-sulfur cluster-binding protein
3025	 52.18	0	3673897..3675435	+	512	192362384	-	CJA_3094	-	hypothetical protein
3026	 56.61	0	3675466..3675972	+	168	192361160	-	CJA_3095	-	hypothetical protein
3027	 61.09	+1	3675983..3677971	+	662	192360342	-	CJA_3096	-	hypothetical protein
3028	 42.91	-1	3678805..3679671	+	288	192360426	-	CJA_3097	-	hypothetical protein
3029	 61.40	+1	3679777..3680592	+	271	192361976	-	CJA_3098	-	dehydrogenase subunit
3030	 56.49	0	3680891..3682345	+	484	192361140	gnd	CJA_3099	-	6-phosphogluconate dehydrogenase, decarboxylating
3031	 54.48	0	3683697..3684377	+	226	192359772	-	CJA_3100	-	hypothetical protein
3032	 54.87	0	3684415..3686160	+	581	192359001	-	CJA_3101	-	oxidoreductase, GMC family
3033	 53.77	0	3686196..3687071	+	291	192362496	-	CJA_3102	-	hypothetical protein
3034	 50.69	0	3687114..3688196	+	360	192361479	ce2C	CJA_3103	-	acetyl xylan esterase, putative, axe2A
3035	 55.79	0	3688296..3690245	-	649	192361673	pel10A	CJA_3104	-	pectate lyase, pel10A
3036	 39.58	-2	3690798..3690893	-	31	192360866	-	CJA_3105	-	hypothetical protein
3037	 56.49	0	3691018..3693474	+	818	192359995	cbp2B	CJA_3106	-	carbohydrate binding protein, putative, cbp2B
3038	 54.42	0	3693620..3695929	+	769	192359051	cbp2C	CJA_3107	-	carbohydrate binding protein, putative, cbp2C
3039	 52.41	0	3696043..3697059	-	338	192361803	-	CJA_3108	-	lipase family protein
3040	 44.96	-1	3697043..3697171	-	42	192360720	-	CJA_3109	-	hypothetical protein
3041	 57.45	0	3697261..3698139	+	292	192360512	-	CJA_3110	-	beta-lactamase
3042	 42.42	-1	3698280..3698444	-	54	192359494	-	CJA_3111	-	hypothetical protein
3043	 46.02	-1	3698344..3699336	+	330	192362222	-	CJA_3112	-	putative dipeptidyl peptidase IV
3044	 56.11	0	3699347..3699649	-	100	192361514	-	CJA_3113	-	hypothetical protein
3045	 52.52	0	3699751..3700068	-	105	192360124	-	CJA_3114	-	hypothetical protein
3046	 57.60	+1	3700121..3701113	-	330	192359052	-	CJA_3115	-	putative lipoprotein
3047	 56.31	0	3701180..3701401	-	73	192359592	pme8B	CJA_3116	-	pectin methylesterase putative, pme8B
3048	 55.56	0	3701677..3702234	-	185	192360800	orn	CJA_3117	-	oligoribonuclease
3049	 59.46	+1	3702330..3703370	+	346	192361423	-	CJA_3118	-	GTPase, YjeQ family
3050	 55.60	0	3703401..3704213	+	270	192360611	rhdA	CJA_3119	-	rhodanese
3051	 53.12	0	3704298..3706496	-	732	192359341	pel1G	CJA_3120	-	pectate lyase, putative, pel1G
3052	 35.40	-2	3706713..3707777	-	354	192362319	-	CJA_3121	-	hypothetical protein
3053	 34.30	-2	3707761..3708069	-	102	192361032	-	CJA_3122	-	hypothetical protein
3054	 57.70	+1	3708978..3710081	+	367	192359421	-	CJA_3123	-	hypothetical protein
3055	 60.61	+1	3710044..3710670	+	208	192361855	-	CJA_3124	-	hypothetical protein
3056	 58.90	+1	3710704..3711501	+	265	192361054	acm73A	CJA_3125	-	endo-beta-N-acetylglucosaminidase, putative, acm73A
3057	 56.89	0	3711848..3713668	+	606	192360380	amy13I	CJA_3126	-	alpha-amylase, putative, amy13I
3058	 55.23	0	3713767..3714876	-	369	192360938	pda4D	CJA_3127	-	polysaccharide deacetylase, putative, pda4D
3059	 56.27	0	3714952..3718317	-	1121	192362007	-	CJA_3128	-	hypothetical protein
3060	 59.88	+1	3717704..3717865	+	53	192358780	-	CJA_3129	-	hypothetical protein
3061	 62.71	+1	3717768..3717944	+	58	192360680	-	CJA_3130	-	hypothetical protein
3062	 57.41	0	3718406..3718675	-	89	192361767	-	CJA_3131	-	hypothetical protein
3063	 57.19	0	3718781..3721039	-	752	192362361	parC	CJA_3132	-	DNA topoisomerase IV, A subunit
3064	 55.69	0	3721112..3721612	-	166	192359558	-	CJA_3133	-	putative lipoprotein
3065	 57.21	0	3721680..3722081	+	133	192361491	-	CJA_3135	-	hypothetical protein
3066	 56.08	0	3722078..3722455	-	125	192362102	-	CJA_3134	-	hypothetical protein
3067	 61.32	+1	3722505..3723233	-	242	192362005	-	CJA_3136	-	hypothetical protein
3068	 59.88	+1	3723226..3723873	-	215	192358886	glob1	CJA_3137	-	metallo-beta-lactamase superfamily protein
3069	 58.22	+1	3723931..3724581	-	216	192360323	-	CJA_3138	-	hypothetical protein
3070	 54.54	0	3724666..3725679	-	337	192360917	cbp33/10B	CJA_3139	-	chitin binding protein, putative, cbp33/10B
3071	 54.65	0	3726695..3727543	+	282	192359308	psd	CJA_3140	-	phosphatidylserine decarboxylase
3072	 50.53	0	3727613..3728368	-	251	192360394	-	CJA_3141	-	Integral membrane protein TerC family superfamily
3073	 46.67	-1	3728381..3728500	-	39	192359876	-	CJA_3142	-	hypothetical protein
3074	 54.17	0	3728525..3729892	-	455	192362497	-	CJA_3143	-	HD domain protein
3075	 58.92	+1	3730103..3731173	-	356	192360733	hemE	CJA_3144	-	uroporphyrinogen decarboxylase
3076	 56.76	0	3731268..3732851	-	527	192361840	-	CJA_3145	-	Na/Pi cotransporter family protein
3077	 55.37	0	3732904..3734319	-	471	192362482	gltD	CJA_3146	-	glutamate synthase, small subunit
3078	 57.58	+1	3734342..3738796	-	1484	192361435	-	CJA_3147	-	glutamate synthase large chain precursor
3079	 57.30	0	3739053..3739511	-	152	192359831	-	CJA_3148	-	putative lipoprotein
3080	 60.12	+1	3739640..3740770	+	376	192358791	-	CJA_3149	-	hypothetical protein
3081	 55.16	0	3740776..3742287	-	503	192360965	-	CJA_3150	-	tryptophan halogenase
3082	 58.28	+1	3742312..3743253	-	313	192359878	-	CJA_3151	-	transcriptional regulator, LysR family
3083	 58.35	+1	3743474..3744784	+	436	192360400	-	CJA_3152	-	cation:proton antiporter
3084	 50.90	0	3744738..3745853	+	371	192359356	-	CJA_3153	-	PEP-CTERM putative exosortase interaction domain protein
3085	 59.86	+1	3745957..3746103	-	48	192358828	-	CJA_3154	-	hypothetical protein
3086	 55.38	0	3746242..3747012	+	256	192360752	-	CJA_3155	-	hypothetical protein
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.