IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2944	 51.98	0	3568956..3570296	-	446	192359765	-	CJA_3013	-	YicJ-like protein
2945	 54.50	0	3570437..3571036	-	199	192360595	-	CJA_3014	-	hypothetical protein
2946	 53.96	0	3571088..3572590	-	500	192360687	-	CJA_3015	-	L-arabinose isomerase
2947	 52.79	0	3572609..3573307	-	232	192362148	-	CJA_3016	-	putative L-ribulose-5-phosphate 4-epimerase
2948	 57.21	0	3573304..3574974	-	556	192359667	araB	CJA_3017	-	L-ribulokinase
2949	 55.82	0	3575088..3576092	-	334	192360043	gly43N	CJA_3018	-	beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43N
2950	 54.29	0	3576459..3577403	+	314	192359233	-	CJA_3019	-	ABC transporter periplasmic binding protein
2951	 56.38	0	3577516..3579012	+	498	192360047	-	CJA_3020	-	sugar ABC transporter ATP-binding protein
2952	 55.16	0	3579027..3580043	+	338	192360673	-	CJA_3021	-	sugar ABC transporter permease protein
2953	 52.66	0	3580036..3580992	+	318	192359503	-	CJA_3022	-	putative ABC transporter permease protein
2954	 51.66	0	3581135..3582040	+	301	192360530	-	CJA_3023	-	hypothetical protein
2955	 60.96	+1	3582218..3583462	+	414	192361163	-	CJA_3024	-	RNA polymerase sigma factor, sigma-70 family
2956	 53.74	0	3583464..3583811	-	115	192359159	-	CJA_3025	-	hypothetical protein
2957	 53.72	0	3584065..3584427	+	120	192360115	-	CJA_3026	-	hypothetical protein
2958	 49.39	0	3584479..3584889	+	136	192360730	-	CJA_3027	-	hypothetical protein
2959	 54.26	0	3584921..3585307	+	128	192359252	-	CJA_3028	-	DGPF domain superfamily
2960	 51.83	0	3585279..3585797	+	172	192362516	-	CJA_3029	-	transcriptional regulatory protein
2961	 50.86	0	3585856..3588063	-	735	192360015	-	CJA_3030	-	hypothetical protein
2962	 57.79	+1	3588189..3590429	-	746	192359326	-	CJA_3031	-	cell wall degradation protein
2963	 54.95	0	3590466..3591233	+	255	192361645	-	CJA_3032	-	hypothetical protein
2964	 49.41	0	3591530..3593059	-	509	192361048	-	CJA_3033	-	Peptidase family S41B family
2965	 51.07	0	3594429..3603770	-	3113	192360205	-	CJA_3034	-	hypothetical protein
2966	 43.86	-1	3594517..3594630	+	37	192359112	-	CJA_3035	-	hypothetical protein
2967	 54.87	0	3603508..3603702	+	64	192361300	-	CJA_3037	-	hypothetical protein
2968	 49.84	0	3603692..3604636	-	314	192362367	-	CJA_3036	-	hypothetical protein
2969	 54.06	0	3604695..3606701	-	668	192362463	-	CJA_3038	-	putative AAA family ATPase
2970	 53.82	0	3606698..3608449	-	583	192361170	-	CJA_3039	-	hypothetical protein
2971	 57.57	+1	3608463..3612464	-	1333	192360393	-	CJA_3040	-	hypothetical protein
2972	 62.83	+1	3612555..3614276	-	573	192360026	-	CJA_3041	-	hypothetical protein
2973	 64.40	+2	3614315..3615241	-	308	192361934	-	CJA_3042	-	hypothetical protein
2974	 63.93	+2	3615270..3617756	-	828	192360695	-	CJA_3043	-	hypothetical protein
2975	 63.38	+2	3617769..3619931	-	720	192359888	-	CJA_3044	-	hypothetical protein
2976	 60.49	+1	3619959..3620363	-	134	192358799	-	CJA_3045	-	hypothetical protein
2977	 59.42	+1	3620369..3622078	-	569	192361842	-	CJA_3046	-	hypothetical protein
2978	 61.97	+1	3622078..3622737	-	219	192360310	-	CJA_3047	-	hypothetical protein
2979	 59.60	+1	3622725..3623771	-	348	192360195	-	CJA_3048	-	hypothetical protein
2980	 53.57	0	3623781..3623948	-	55	192361019	-	CJA_3049	-	hypothetical protein
2981	 56.84	0	3623969..3625036	-	355	192361886	-	CJA_3050	-	hypothetical protein
2982	 56.26	0	3625140..3625610	-	156	192359889	-	CJA_3051	-	conserved hypothetical phage tail region protein subfamily
2983	 59.20	+1	3625603..3627168	-	521	192360874	-	CJA_3052	-	hypothetical protein
2984	 53.03	0	3627207..3627668	-	153	192361672	-	CJA_3053	-	conserved hypothetical phage tail region protein subfamily
2985	 58.08	+1	3627712..3629295	-	527	192362398	-	CJA_3054	-	Phage tail sheath protein
2986	 57.23	0	3629338..3630153	-	271	192361577	-	CJA_3055	-	hypothetical protein
2987	 55.45	0	3630203..3630817	-	204	192362141	-	CJA_3056	-	hypothetical protein
2988	 56.88	0	3630821..3631147	-	108	192359073	-	CJA_3057	-	hypothetical protein
2989	 49.49	0	3631154..3631252	-	32	192361634	-	CJA_3058	-	hypothetical protein
2990	 46.76	0	3631300..3631515	-	71	192359297	-	CJA_3059	-	hypothetical protein
2991	 52.08	0	3631675..3633162	+	495	192360302	mopR	CJA_3060	-	MopR
2992	 53.00	0	3633292..3634623	-	443	192360940	xylA	CJA_3061	-	xylose isomerase
2993	 55.20	0	3634666..3636147	-	493	192362034	-	CJA_3062	-	xylulose kinase (xylulokinase)
2994	 54.59	0	3636343..3637203	+	286	192358846	nuhA	CJA_3063	-	Nudix hydrolase
2995	 54.76	0	3637320..3638873	+	517	192360007	xylE	CJA_3064	-	MFS transporter
2996	 52.80	0	3639042..3639380	-	112	192359899	-	CJA_3065	-	hypothetical protein
2997	 52.00	0	3639064..3640884	+	606	192360972	xyn10C	CJA_3066	-	endo-beta-1,4-xylanase, xyn10C
2998	 55.24	0	3640913..3642619	+	568	192361726	gly43J	CJA_3067	-	beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43J
2999	 54.49	0	3642600..3645548	+	982	192361118	-	CJA_3068	-	hypothetical protein
3000	 53.43	0	3645577..3646785	+	402	192362413	rspA	CJA_3069	-	Starvation sensing protein rspA
3001	 51.42	0	3646845..3647972	+	375	192358849	gly43G	CJA_3070	-	beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43G
3002	 49.23	0	3648182..3648766	+	194	192360928	-	CJA_3071	-	putative module of glucan-glucohydrolase
3003	 42.04	-1	3648886..3652353	-	1155	192362075	-	CJA_3072	-	TonB-dependent receptor
3004	 52.47	0	3652659..3653996	-	445	192359362	purA	CJA_3073	-	adenylosuccinate synthetase
3005	 54.58	0	3654004..3655194	-	396	192358954	hisZ	CJA_3074	-	ATP phosphoribosyltransferase, regulatory subunit
3006	 53.25	0	3655200..3655445	-	81	192360416	-	CJA_3075	-	hypothetical protein
3007	 50.80	0	3655548..3656423	-	291	192360991	hflC	CJA_3076	-	HflC protein
3008	 54.76	0	3656423..3657556	-	377	192360411	hflK	CJA_3077	-	HflK protein
3009	 53.74	0	3657584..3658921	-	445	192361241	-	CJA_3078	-	hypothetical protein
3010	 47.57	0	3658955..3659221	-	88	192362520	hfq	CJA_3079	-	Hfq protein
3011	 54.18	0	3659344..3660360	-	338	192358868	miaA	CJA_3080	-	tRNA delta(2)-isopentenylpyrophosphate transferase
3012	 57.10	0	3660364..3662244	-	626	192359923	mutL	CJA_3081	-	DNA mismatch repair protein MutL
3013	 57.16	0	3662241..3663629	-	462	192360903	-	CJA_3082	-	N-acetylmuramoyl-L-alanine amidase
3014	 43.65	-1	3663720..3663845	-	41	192361996	-	CJA_3083	-	hypothetical protein
3015	 43.39	-1	3663914..3664102	-	62	192362219	-	CJA_3084	-	hypothetical protein
3016	 57.14	0	3664107..3666320	-	737	192361865	-	CJA_3085	-	putative sensory box protein
3017	 60.62	+1	3666515..3666994	-	159	192360576	-	CJA_3086	-	conserved hypothetical protein TIGR00150
3018	 65.81	+2	3667004..3668518	-	504	192359898	-	CJA_3087	-	YjeF family protein
3019	 58.56	+1	3668594..3670321	+	575	192359187	-	CJA_3088	-	hypothetical protein
3020	 51.42	0	3670318..3670704	+	128	192361910	-	CJA_3089	-	hypothetical protein
3021	 43.75	-1	3670667..3670762	+	31	192359012	-	CJA_3091	-	hypothetical protein
3022	 50.34	0	3670755..3671483	-	242	192362264	-	CJA_3090	-	hypothetical protein
3023	 48.65	0	3671583..3672359	-	258	192362335	-	CJA_3092	-	hypothetical protein
3024	 53.62	0	3672568..3673755	+	395	192361608	-	CJA_3093	-	iron-sulfur cluster-binding protein
3025	 52.18	0	3673897..3675435	+	512	192362384	-	CJA_3094	-	hypothetical protein
3026	 56.61	0	3675466..3675972	+	168	192361160	-	CJA_3095	-	hypothetical protein
3027	 61.09	+1	3675983..3677971	+	662	192360342	-	CJA_3096	-	hypothetical protein
3028	 42.91	-1	3678805..3679671	+	288	192360426	-	CJA_3097	-	hypothetical protein
3029	 61.40	+1	3679777..3680592	+	271	192361976	-	CJA_3098	-	dehydrogenase subunit
3030	 56.49	0	3680891..3682345	+	484	192361140	gnd	CJA_3099	-	6-phosphogluconate dehydrogenase, decarboxylating
3031	 54.48	0	3683697..3684377	+	226	192359772	-	CJA_3100	-	hypothetical protein
3032	 54.87	0	3684415..3686160	+	581	192359001	-	CJA_3101	-	oxidoreductase, GMC family
3033	 53.77	0	3686196..3687071	+	291	192362496	-	CJA_3102	-	hypothetical protein
3034	 50.69	0	3687114..3688196	+	360	192361479	ce2C	CJA_3103	-	acetyl xylan esterase, putative, axe2A
3035	 55.79	0	3688296..3690245	-	649	192361673	pel10A	CJA_3104	-	pectate lyase, pel10A
3036	 39.58	-2	3690798..3690893	-	31	192360866	-	CJA_3105	-	hypothetical protein
3037	 56.49	0	3691018..3693474	+	818	192359995	cbp2B	CJA_3106	-	carbohydrate binding protein, putative, cbp2B
3038	 54.42	0	3693620..3695929	+	769	192359051	cbp2C	CJA_3107	-	carbohydrate binding protein, putative, cbp2C
3039	 52.41	0	3696043..3697059	-	338	192361803	-	CJA_3108	-	lipase family protein
3040	 44.96	-1	3697043..3697171	-	42	192360720	-	CJA_3109	-	hypothetical protein
3041	 57.45	0	3697261..3698139	+	292	192360512	-	CJA_3110	-	beta-lactamase
3042	 42.42	-1	3698280..3698444	-	54	192359494	-	CJA_3111	-	hypothetical protein
3043	 46.02	-1	3698344..3699336	+	330	192362222	-	CJA_3112	-	putative dipeptidyl peptidase IV
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.