IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2864	 54.17	0	3437582..3438949	-	455	192359523	murD	CJA_2931	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
2865	 52.72	0	3438954..3440036	-	360	192359109	mraY	CJA_2932	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2866	 55.03	0	3440036..3441427	-	463	192361367	murF	CJA_2933	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
2867	 58.62	+1	3441424..3442989	-	521	192360758	murE	CJA_2934	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2868	 60.34	+1	3442989..3444821	-	610	192360172	ftsI	CJA_2935	-	penicillin-binding protein 3 - Pseudomonas aeruginosa
2869	 57.14	0	3444821..3445135	-	104	192358781	-	CJA_2936	-	cell division protein FtsL
2870	 60.11	+1	3445201..3446130	-	309	192361777	mraW	CJA_2937	-	S-adenosyl-methyltransferase MraW
2871	 55.78	0	3446140..3446580	-	146	192361565	mraZ	CJA_2938	-	mraZ protein
2872	 55.26	0	3447022..3448248	-	408	192361904	-	CJA_2939	-	response regulator
2873	 57.35	0	3448245..3449285	-	346	192362380	cheB-1	CJA_2940	-	protein-glutamate methylesterase CheB
2874	 52.38	0	3449301..3449783	-	160	192359746	-	CJA_2941	-	putative cheB, glutamate methylesterase
2875	 50.06	0	3449793..3450623	-	276	192360833	-	CJA_2942	-	chemotaxis protein methyltransferase CheR
2876	 50.90	0	3450680..3452347	-	555	192361633	-	CJA_2943	-	methyl-accepting chemotaxis protein
2877	 50.10	0	3452393..3452899	-	168	192359177	-	CJA_2944	-	chemotaxis protein
2878	 53.03	0	3452896..3455103	-	735	192360109	cheA-1	CJA_2945	-	chemotaxis sensor histidine kinase CheA
2879	 50.00	0	3455116..3455421	-	101	192361462	-	CJA_2946	-	STAS domain protein
2880	 50.00	0	3455432..3455797	-	121	192360976	cheY-1	CJA_2947	-	chemotaxis protein CheY
2881	 54.07	0	3455869..3457122	-	417	192361529	-	CJA_2948	-	putative methyl-accepting chemotaxis protein
2882	 50.23	0	3457195..3457413	-	72	192361871	-	CJA_2949	-	hypothetical protein
2883	 58.07	+1	3457529..3460144	-	871	192361093	ppc	CJA_2950	-	phosphoenolpyruvate carboxylase
2884	 46.40	-1	3461142..3462710	-	522	192361925	-	CJA_2951	-	IS66 family element, transposase
2885	 51.11	0	3463088..3463402	-	104	192361534	-	CJA_2953	-	IS66 family element, Orf1 protein
2886	 57.60	+1	3463988..3468169	-	1393	192362333	-	CJA_2954	-	Molybdopterin oxidoreductase Fe4S4 domain family
2887	 58.24	+1	3468393..3470078	-	561	192361621	-	CJA_2955	-	methyl-accepting chemotaxis protein
2888	 59.35	+1	3470411..3472270	+	619	192359155	-	CJA_2956	-	hypothetical protein
2889	 53.52	0	3472413..3474641	+	742	192362086	-	CJA_2957	-	EAL domain protein
2890	 30.48	-2	3474670..3474774	+	34	192359428	-	CJA_2958	-	hypothetical protein
2891	 58.11	+1	3475025..3476695	+	556	192362355	cel5F	CJA_2959	-	cellulase, putative, cel5F
2892	 56.39	0	3476778..3478169	-	463	192361538	-	CJA_2960	-	ACT domain protein/phosphoserine phosphatase SerB
2893	 55.56	0	3478364..3479515	+	383	192362425	-	CJA_2961	-	hypothetical protein
2894	 52.96	0	3479677..3481398	+	573	192360717	-	CJA_2962	-	acyltransferase family protein
2895	 54.77	0	3481426..3482274	-	282	192359853	-	CJA_2963	-	hypothetical protein
2896	 57.33	0	3482552..3483943	+	463	192359036	mpl	CJA_2964	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
2897	 49.92	0	3484141..3484779	+	212	192361981	rpiB2	CJA_2965	-	sugar-phosphate isomerase
2898	 54.52	0	3484993..3485601	+	202	192361096	-	CJA_2966	-	3-polyprenyl-4-hydroxybenzoate decarboxylase
2899	 51.60	0	3485620..3486528	+	302	192361339	-	CJA_2967	-	hydroxymethylglutaryl-CoA lyase, (HMG-CoA lyase) (HL) (3-hydroxy-3-methylglutarate-CoA lyase)
2900	 52.81	0	3486571..3486873	+	100	192360843	-	CJA_2968	-	hypothetical protein
2901	 50.11	0	3486876..3487322	+	148	192359719	-	CJA_2969	-	acetyltransferase, GNAT family
2902	 49.88	0	3487343..3487753	+	136	192360519	-	CJA_2970	-	hypothetical protein
2903	 52.86	0	3487851..3488567	-	238	192360929	-	CJA_2971	-	Smr domain protein
2904	 55.52	0	3488545..3490482	-	645	192362197	acsA	CJA_2972	-	acetate--CoA ligase
2905	 50.00	0	3490671..3490916	-	81	192358842	-	CJA_2973	-	hypothetical protein
2906	 53.28	0	3491007..3491387	-	126	192360161	panD	CJA_2974	-	aspartate 1-decarboxylase
2907	 54.93	0	3491420..3492271	-	283	192360492	panC	CJA_2975	-	pantoate--beta-alanine ligase
2908	 56.21	0	3492398..3492904	-	168	192361841	-	CJA_2976	-	MOSC domain protein
2909	 56.08	0	3493066..3493320	+	84	192359892	-	CJA_2977	-	prevent-host-death family protein
2910	 53.18	0	3493313..3493579	+	88	192360983	-	CJA_2979	-	addiction module toxin, Txe/YoeB family
2911	 56.75	0	3493576..3494967	-	463	192362526	dnaB	CJA_2978	-	replicative DNA helicase
2912	 54.59	0	3495105..3495551	-	148	192359627	rplI	CJA_2980	-	ribosomal protein L9
2913	 51.32	0	3495566..3495793	-	75	192362397	rpsR	CJA_2981	-	ribosomal protein S18
2914	 52.70	0	3495797..3496240	-	147	192358927	rpsF	CJA_2982	-	30S ribosomal protein S6
2915	 59.14	+1	3496704..3498416	+	570	192360233	cel5B	CJA_2983	-	endo-1,4-beta glucanase, cel5B
2916	 59.82	+1	3498699..3501836	+	1045	192361571	glu16D	CJA_2984	-	beta glucanase, putative, glu16D
2917	 58.86	+1	3501997..3505581	+	1194	192361269	gly16A	CJA_2985	-	glycoside hydrolase, putative, gly16A
2918	 52.45	0	3505669..3506301	+	210	192362151	-	CJA_2986	-	PEP-CTERM putative exosortase interaction domain protein
2919	 47.22	0	3506355..3507506	-	383	192359768	-	CJA_2987	-	ISCja2, transposase
2920	 49.76	0	3507653..3508681	-	342	192360646	-	CJA_2988	-	hypothetical protein
2921	 49.46	0	3509103..3509654	+	183	192362379	-	CJA_2989	-	hypothetical protein
2922	 54.05	0	3509671..3510201	+	176	192361609	-	CJA_2990	-	putative lipoprotein
2923	 48.00	0	3510282..3511433	-	383	192360377	-	CJA_2991	-	putative DNA binding protein
2924	 45.36	-1	3511473..3511655	-	60	192361931	-	CJA_2992	-	hypothetical protein
2925	 53.97	0	3511820..3513433	-	537	192361989	chi18C	CJA_2993	-	endo-chitinase, putative, chi18C
2926	 59.20	+1	3513808..3514557	-	249	192360670	-	CJA_2994	-	RNA methyltransferase, TrmH family, group 3
2927	 56.39	0	3514706..3517606	-	966	192360091	-	CJA_2995	-	putative ribonuclease R
2928	 47.56	0	3518071..3518850	-	259	192359019	pchC	CJA_2997	-	pyochelin biosynthetic protein PchC
2929	 45.44	-1	3518881..3521226	-	781	192361164	pksE	CJA_2998	-	involved in polyketide synthesis
2930	 45.39	-1	3521243..3523000	-	585	192362122	halA	CJA_2999	-	halogenase A
2931	 47.85	0	3523065..3528740	-	1891	192361943	-	CJA_3000	-	MmpIV
2932	 56.28	0	3528737..3542806	-	4689	192360862	-	CJA_3001	-	Beta-ketoacyl synthase, N-terminal domain protein
2933	 56.31	0	3542803..3547968	-	1721	192359789	-	CJA_3002	-	oxidoreductase, zinc-binding dehydrogenase family
2934	 53.12	0	3547961..3554392	-	2143	192358782	-	CJA_3003	-	EpoC
2935	 46.60	-1	3554519..3558649	-	1376	192361741	-	CJA_3004	-	putative BarE protein
2936	 54.47	0	3559508..3560704	-	398	192361387	-	CJA_3005	-	hypothetical protein
2937	 51.44	0	3560704..3561051	-	115	192359476	-	CJA_3006	-	hypothetical protein
2938	 56.82	0	3561161..3562816	-	551	192362297	gly43H	CJA_3007	-	beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43H
2939	 53.38	0	3562885..3564450	-	521	192361206	xyl39A	CJA_3008	-	beta-xylosidase, putative, xyl39A
2940	 51.80	0	3564474..3564890	-	138	192359930	-	CJA_3009	-	hypothetical protein
2941	 56.08	0	3564891..3566297	-	468	192361062	cel5D	CJA_3010	-	cellulase, putative, cel5D
2942	 51.41	0	3566443..3567615	-	390	192361893	-	CJA_3011	-	transcriptional regulator, AraC family domain protein
2943	 54.70	0	3567963..3568931	-	322	192358906	abf43K	CJA_3012	-	alpha-L-arabinfuranosidase, putative, abf43K
2944	 51.98	0	3568956..3570296	-	446	192359765	-	CJA_3013	-	YicJ-like protein
2945	 54.50	0	3570437..3571036	-	199	192360595	-	CJA_3014	-	hypothetical protein
2946	 53.96	0	3571088..3572590	-	500	192360687	-	CJA_3015	-	L-arabinose isomerase
2947	 52.79	0	3572609..3573307	-	232	192362148	-	CJA_3016	-	putative L-ribulose-5-phosphate 4-epimerase
2948	 57.21	0	3573304..3574974	-	556	192359667	araB	CJA_3017	-	L-ribulokinase
2949	 55.82	0	3575088..3576092	-	334	192360043	gly43N	CJA_3018	-	beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43N
2950	 54.29	0	3576459..3577403	+	314	192359233	-	CJA_3019	-	ABC transporter periplasmic binding protein
2951	 56.38	0	3577516..3579012	+	498	192360047	-	CJA_3020	-	sugar ABC transporter ATP-binding protein
2952	 55.16	0	3579027..3580043	+	338	192360673	-	CJA_3021	-	sugar ABC transporter permease protein
2953	 52.66	0	3580036..3580992	+	318	192359503	-	CJA_3022	-	putative ABC transporter permease protein
2954	 51.66	0	3581135..3582040	+	301	192360530	-	CJA_3023	-	hypothetical protein
2955	 60.96	+1	3582218..3583462	+	414	192361163	-	CJA_3024	-	RNA polymerase sigma factor, sigma-70 family
2956	 53.74	0	3583464..3583811	-	115	192359159	-	CJA_3025	-	hypothetical protein
2957	 53.72	0	3584065..3584427	+	120	192360115	-	CJA_3026	-	hypothetical protein
2958	 49.39	0	3584479..3584889	+	136	192360730	-	CJA_3027	-	hypothetical protein
2959	 54.26	0	3584921..3585307	+	128	192359252	-	CJA_3028	-	DGPF domain superfamily
2960	 51.83	0	3585279..3585797	+	172	192362516	-	CJA_3029	-	transcriptional regulatory protein
2961	 50.86	0	3585856..3588063	-	735	192360015	-	CJA_3030	-	hypothetical protein
2962	 57.79	+1	3588189..3590429	-	746	192359326	-	CJA_3031	-	cell wall degradation protein
2963	 54.95	0	3590466..3591233	+	255	192361645	-	CJA_3032	-	hypothetical protein
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.