IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2806	 53.25	0	3363895..3365943	-	682	192361368	-	CJA_2873	-	iron transporter
2807	 51.48	0	3366047..3368350	-	767	192362415	-	CJA_2874	-	GGDEF domain protein
2808	 52.25	0	3368331..3368441	+	36	192359691	-	CJA_2875	-	hypothetical protein
2809	 55.27	0	3368630..3371095	+	821	192359807	-	CJA_2876	-	putative two-component, response regulator
2810	 56.62	0	3371369..3372532	+	387	192361807	-	CJA_2877	-	argD acetylornithine aminotransferase
2811	 54.03	0	3372580..3373497	+	305	192359088	argF	CJA_2878	-	ornithine carbamoyltransferase
2812	 49.58	0	3374020..3374493	+	157	192360181	-	CJA_2879	-	hypothetical protein
2813	 52.19	0	3374576..3375625	-	349	192359222	-	CJA_2880	-	hypothetical protein
2814	 47.39	0	3375796..3377310	-	504	192359954	-	CJA_2881	-	tryptophan halogenase
2815	 49.05	0	3377427..3380435	-	1002	192360688	-	CJA_2882	-	TonB-dependent receptor
2816	 45.83	-1	3380591..3380686	+	31	192359102	-	CJA_2883	-	hypothetical protein
2817	 54.37	0	3381373..3382128	-	251	192359859	lmt23D	CJA_2884	-	lytic murein transglycosylase, putative, lmt23D
2818	 58.88	+1	3382332..3382832	-	166	192360709	-	CJA_2885	-	hypothetical protein
2819	 54.19	0	3382948..3385344	-	798	192359630	-	CJA_2886	-	DNA polymerase II
2820	 53.34	0	3385495..3387693	-	732	192359625	gla67A	CJA_2887	-	alpha-glucuronidase, gla67A
2821	 51.36	0	3387875..3389011	+	378	192360437	xyn10D	CJA_2888	-	endo-1,4-beta-xylanase, xyn10D
2822	 49.91	0	3389049..3390152	-	367	192361297	axe2B	CJA_2889	-	acetyl xylan esterase, putative, axe2B
2823	 50.00	0	3390149..3390280	-	43	192360152	-	CJA_2890	-	hypothetical protein
2824	 56.26	0	3390304..3392493	-	729	192362281	-	CJA_2891	-	catalase/peroxidase HPI
2825	 49.93	0	3392729..3393445	-	238	192361227	ugpQ	CJA_2892	-	Glycerophosphoryl diester phosphodiesterase
2826	 40.86	-2	3393460..3393552	+	30	192361390	-	CJA_2893	-	hypothetical protein
2827	 45.26	-1	3393545..3394114	+	189	192360383	-	CJA_2894	-	Small-conductance mechanosensitive channel
2828	 57.46	0	3394193..3395572	-	459	192358888	maspC	CJA_2895	-	aspartate aminotransferase
2829	 58.95	+1	3395525..3396625	+	366	192359467	cobT	CJA_2896	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
2830	 51.94	0	3396652..3397398	+	248	192362163	cobS	CJA_2897	-	cobalamin 5'-phosphate synthase
2831	 58.17	+1	3397395..3398006	+	203	192360762	-	CJA_2898	-	fructose-2;6-bisphosphatase
2832	 57.46	0	3398041..3399474	+	477	192360921	-	CJA_2900	-	MATE efflux family protein
2833	 55.13	0	3399446..3400234	-	262	192360525	-	CJA_2899	-	HAD-superfamily subfamily IIA hydrolase, TIGR01458
2834	 54.80	0	3400415..3401467	+	350	192362191	hisC	CJA_2901	-	histidinol-phosphate aminotransferase
2835	 58.11	+1	3401530..3403878	-	782	192358829	-	CJA_2902	-	putative lipoprotein
2836	 52.70	0	3404118..3406007	-	629	192360165	parE	CJA_2903	-	DNA topoisomerase IV, B subunit
2837	 56.08	0	3406047..3406622	-	191	192360503	-	CJA_2904	-	hypothetical protein
2838	 53.13	0	3406633..3407415	-	260	192361831	uvs099	CJA_2905	-	Uvs099
2839	 46.30	-1	3407530..3407637	-	35	192359805	-	CJA_2906	-	hypothetical protein
2840	 51.31	0	3407643..3408137	-	164	192361498	uvs098	CJA_2907	-	Uvs098
2841	 52.86	0	3408234..3408863	-	209	192362013	-	CJA_2908	-	conserved hypothetical protein TIGR00052
2842	 52.28	0	3408877..3410787	-	636	192359139	thiC	CJA_2909	-	thiamin biosynthesis protein ThiC
2843	 56.97	0	3410831..3411634	-	267	192359957	thiD	CJA_2910	-	phosphomethylpyrimidine kinase
2844	 54.21	0	3411859..3413094	-	411	192360894	-	CJA_2911	-	putative pH regulated Na(+)/H(+) antiporter
2845	 49.84	0	3413256..3414515	-	419	192360899	-	CJA_2912	-	putative Na+/H+ antiporter NhaD
2846	 52.78	0	3415047..3416465	+	472	192360104	opmH	CJA_2913	-	outer membrane efflux protein
2847	 49.26	0	3416834..3417781	+	315	192362104	pel3C	CJA_2914	-	pectate lyase, putative, pel3C
2848	 50.89	0	3417896..3420082	-	728	192361316	-	CJA_2915	-	BNR/Asp-box repeat domain protein
2849	 52.67	0	3420286..3421578	-	430	192360357	kdt30A	CJA_2916	-	KDO transferase, putative, kdt30A
2850	 54.99	0	3421582..3422532	-	316	192359573	-	CJA_2917	-	putative mutT protein
2851	 52.25	0	3422561..3423781	-	406	192362502	argJ	CJA_2918	-	arginine biosynthesis bifunctional protein ArgJ
2852	 51.42	0	3423878..3426625	-	915	192359411	secA	CJA_2919	-	preprotein translocase, SecA subunit
2853	 53.01	0	3426799..3427728	-	309	192359906	-	CJA_2920	-	peptidase
2854	 50.11	0	3428026..3428937	-	303	192361458	lpx11A	CJA_2921	-	UDP-3-0-acyl N-acetylglucosamine deacetylase, putative, lpx11A
2855	 43.83	-1	3429045..3429206	-	53	192360776	-	CJA_2922	-	hypothetical protein
2856	 49.55	0	3429113..3429223	+	36	192361794	-	CJA_2924	-	hypothetical protein
2857	 55.70	0	3429220..3430395	-	391	192359090	ftsZ	CJA_2923	-	cell division protein FtsZ
2858	 50.20	0	3430449..3431687	-	412	192360144	ftsA	CJA_2925	-	cell division protein FtsA
2859	 52.27	0	3431730..3432854	-	374	192361172	ftsQ	CJA_2926	-	FtsQ
2860	 51.47	0	3432858..3433844	-	328	192362236	-	CJA_2927	-	D-alanine--D-alanine ligase
2861	 52.35	0	3433881..3435305	-	474	192359638	murC	CJA_2928	-	UDP-N-acetylmuramate--alanine ligase
2862	 54.21	0	3435298..3436389	-	363	192360749	mur28A	CJA_2929	-	mur beta-N-acetylglucosaminyltransferase, putative, mur28A
2863	 49.83	0	3436386..3437585	-	399	192360597	ftsW	CJA_2930	-	cell division protein FtsW
2864	 54.17	0	3437582..3438949	-	455	192359523	murD	CJA_2931	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
2865	 52.72	0	3438954..3440036	-	360	192359109	mraY	CJA_2932	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2866	 55.03	0	3440036..3441427	-	463	192361367	murF	CJA_2933	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
2867	 58.62	+1	3441424..3442989	-	521	192360758	murE	CJA_2934	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2868	 60.34	+1	3442989..3444821	-	610	192360172	ftsI	CJA_2935	-	penicillin-binding protein 3 - Pseudomonas aeruginosa
2869	 57.14	0	3444821..3445135	-	104	192358781	-	CJA_2936	-	cell division protein FtsL
2870	 60.11	+1	3445201..3446130	-	309	192361777	mraW	CJA_2937	-	S-adenosyl-methyltransferase MraW
2871	 55.78	0	3446140..3446580	-	146	192361565	mraZ	CJA_2938	-	mraZ protein
2872	 55.26	0	3447022..3448248	-	408	192361904	-	CJA_2939	-	response regulator
2873	 57.35	0	3448245..3449285	-	346	192362380	cheB-1	CJA_2940	-	protein-glutamate methylesterase CheB
2874	 52.38	0	3449301..3449783	-	160	192359746	-	CJA_2941	-	putative cheB, glutamate methylesterase
2875	 50.06	0	3449793..3450623	-	276	192360833	-	CJA_2942	-	chemotaxis protein methyltransferase CheR
2876	 50.90	0	3450680..3452347	-	555	192361633	-	CJA_2943	-	methyl-accepting chemotaxis protein
2877	 50.10	0	3452393..3452899	-	168	192359177	-	CJA_2944	-	chemotaxis protein
2878	 53.03	0	3452896..3455103	-	735	192360109	cheA-1	CJA_2945	-	chemotaxis sensor histidine kinase CheA
2879	 50.00	0	3455116..3455421	-	101	192361462	-	CJA_2946	-	STAS domain protein
2880	 50.00	0	3455432..3455797	-	121	192360976	cheY-1	CJA_2947	-	chemotaxis protein CheY
2881	 54.07	0	3455869..3457122	-	417	192361529	-	CJA_2948	-	putative methyl-accepting chemotaxis protein
2882	 50.23	0	3457195..3457413	-	72	192361871	-	CJA_2949	-	hypothetical protein
2883	 58.07	+1	3457529..3460144	-	871	192361093	ppc	CJA_2950	-	phosphoenolpyruvate carboxylase
2884	 46.40	-1	3461142..3462710	-	522	192361925	-	CJA_2951	-	IS66 family element, transposase
2885	 51.11	0	3463088..3463402	-	104	192361534	-	CJA_2953	-	IS66 family element, Orf1 protein
2886	 57.60	+1	3463988..3468169	-	1393	192362333	-	CJA_2954	-	Molybdopterin oxidoreductase Fe4S4 domain family
2887	 58.24	+1	3468393..3470078	-	561	192361621	-	CJA_2955	-	methyl-accepting chemotaxis protein
2888	 59.35	+1	3470411..3472270	+	619	192359155	-	CJA_2956	-	hypothetical protein
2889	 53.52	0	3472413..3474641	+	742	192362086	-	CJA_2957	-	EAL domain protein
2890	 30.48	-2	3474670..3474774	+	34	192359428	-	CJA_2958	-	hypothetical protein
2891	 58.11	+1	3475025..3476695	+	556	192362355	cel5F	CJA_2959	-	cellulase, putative, cel5F
2892	 56.39	0	3476778..3478169	-	463	192361538	-	CJA_2960	-	ACT domain protein/phosphoserine phosphatase SerB
2893	 55.56	0	3478364..3479515	+	383	192362425	-	CJA_2961	-	hypothetical protein
2894	 52.96	0	3479677..3481398	+	573	192360717	-	CJA_2962	-	acyltransferase family protein
2895	 54.77	0	3481426..3482274	-	282	192359853	-	CJA_2963	-	hypothetical protein
2896	 57.33	0	3482552..3483943	+	463	192359036	mpl	CJA_2964	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
2897	 49.92	0	3484141..3484779	+	212	192361981	rpiB2	CJA_2965	-	sugar-phosphate isomerase
2898	 54.52	0	3484993..3485601	+	202	192361096	-	CJA_2966	-	3-polyprenyl-4-hydroxybenzoate decarboxylase
2899	 51.60	0	3485620..3486528	+	302	192361339	-	CJA_2967	-	hydroxymethylglutaryl-CoA lyase, (HMG-CoA lyase) (HL) (3-hydroxy-3-methylglutarate-CoA lyase)
2900	 52.81	0	3486571..3486873	+	100	192360843	-	CJA_2968	-	hypothetical protein
2901	 50.11	0	3486876..3487322	+	148	192359719	-	CJA_2969	-	acetyltransferase, GNAT family
2902	 49.88	0	3487343..3487753	+	136	192360519	-	CJA_2970	-	hypothetical protein
2903	 52.86	0	3487851..3488567	-	238	192360929	-	CJA_2971	-	Smr domain protein
2904	 55.52	0	3488545..3490482	-	645	192362197	acsA	CJA_2972	-	acetate--CoA ligase
2905	 50.00	0	3490671..3490916	-	81	192358842	-	CJA_2973	-	hypothetical protein
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.