IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2746	 54.95	0	3294408..3294680	+	90	192359737	pstH	CJA_2810	-	Phosphocarrier protein HPr (Histidine-containing protein)
2747	 52.60	0	3294747..3295265	+	172	192358834	-	CJA_2812	-	hypothetical protein
2748	 56.37	0	3295234..3299517	-	1427	192359882	-	CJA_2811	-	hypothetical protein
2749	 56.73	0	3299566..3301035	-	489	192362515	-	CJA_2813	-	ribonuclease, Rne/Rng family
2750	 60.47	+1	3301032..3301709	-	225	192361461	-	CJA_2814	-	septum formation protein Maf
2751	 52.47	0	3301664..3302149	-	161	192359560	-	CJA_2815	-	putative rod shape-determining protein MreD
2752	 57.76	+1	3302149..3302979	-	276	192362313	mreC	CJA_2816	-	rod shape-determining protein MreC
2753	 55.85	0	3303101..3304135	-	344	192362019	mreB	CJA_2817	-	rod shape-determining protein MreB
2754	 52.67	0	3304322..3304864	+	180	192360948	gatC	CJA_2818	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
2755	 57.39	0	3304947..3306401	+	484	192359738	gatA	CJA_2819	-	glutamyl-tRNA(Gln) amidotransferase subunit A
2756	 53.39	0	3306413..3307858	+	481	192362412	gatB	CJA_2820	-	glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit subfamily
2757	 50.84	0	3307870..3308166	+	98	192359690	-	CJA_2821	-	hypothetical protein
2758	 47.22	0	3308302..3309453	+	383	192360697	-	CJA_2822	-	ISCja2, transposase
2759	 52.60	0	3309514..3310167	-	217	192360671	-	CJA_2823	-	OmpA family protein
2760	 47.62	0	3310459..3310983	+	174	192361944	inlE	CJA_2824	-	internalin E
2761	 47.92	0	3311019..3311162	-	47	192359204	-	CJA_2825	-	hypothetical protein
2762	 49.59	0	3311175..3311297	-	40	192360290	-	CJA_2826	-	hypothetical protein
2763	 49.79	0	3311495..3312205	-	236	192360737	purC	CJA_2827	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2764	 55.38	0	3312242..3313012	-	256	192361468	-	CJA_2828	-	metallo-beta-lactamase superfamily domain protein
2765	 52.72	0	3313013..3314260	-	415	192359024	-	CJA_2829	-	putative lipoprotein
2766	 54.30	0	3314283..3315155	-	290	192359293	dapA	CJA_2830	-	dihydrodipicolinate synthase
2767	 54.73	0	3315276..3316331	-	351	192359175	nadA	CJA_2831	-	quinolinate synthetase complex, A subunit
2768	 51.98	0	3317059..3320979	+	1306	192359980	-	CJA_2834	-	sensory box protein
2769	 55.60	0	3320985..3321662	-	225	192361867	-	CJA_2835	-	exsB protein
2770	 55.99	0	3321699..3322457	-	252	192361070	-	CJA_2836	-	radical SAM domain protein
2771	 59.68	+1	3322519..3322833	+	104	192359299	-	CJA_2838	-	hypothetical protein
2772	 54.88	0	3322830..3323822	-	330	192362294	adrA	CJA_2837	-	YaiC/YhcK/ArdA family protein
2773	 54.02	0	3324065..3325021	-	318	192362266	corA	CJA_2839	-	magnesium and cobalt transport protein CorA
2774	 55.80	0	3325138..3326103	-	321	192361183	htrB	CJA_2840	-	lipid A biosynthesis lauroyl acyltransferase
2775	 54.48	0	3326237..3326515	-	92	192361007	-	CJA_2841	-	hypothetical protein
2776	 56.00	0	3326504..3326653	+	49	192361687	-	CJA_2842	-	hypothetical protein
2777	 51.89	0	3326683..3327000	-	105	192362108	-	CJA_2843	-	glutaredoxin homolog
2778	 46.08	-1	3327091..3327192	-	33	192361451	-	CJA_2844	-	hypothetical protein
2779	 57.86	+1	3327245..3328663	+	472	192360443	baeS	CJA_2845	-	Sensory transduction histidine kinase
2780	 52.94	0	3328685..3329347	+	220	192359567	baeR	CJA_2846	-	DNA-binding response regulator
2781	 52.45	0	3329453..3330310	+	285	192362256	-	CJA_2848	-	protocatechuate dioxygenase
2782	 59.59	+1	3330307..3332751	-	814	192360974	-	CJA_2847	-	putative HrpA-like helicase
2783	 58.20	+1	3332793..3336041	-	1082	192360000	-	CJA_2849	-	two-component system sensor histidine kinase/response regulator, hybrid (one-component system)
2784	 47.37	0	3336142..3336255	-	37	192358974	-	CJA_2850	-	hypothetical protein
2785	 56.62	0	3336264..3338165	-	633	192361712	-	CJA_2851	-	hypothetical protein
2786	 40.62	-2	3338423..3338518	+	31	192359749	-	CJA_2852	-	hypothetical protein
2787	 42.64	-1	3338546..3339652	+	368	192359369	-	CJA_2853	-	hypothetical protein
2788	 51.11	0	3339721..3340035	+	104	192361894	-	CJA_2854	-	IS66 family element, Orf1 protein
2789	 46.40	-1	3340413..3341981	+	522	192359788	-	CJA_2856	-	IS66 family element, transposase
2790	 47.22	0	3342147..3343298	+	383	192358976	-	CJA_2857	-	ISCja2, transposase
2791	 42.43	-1	3343796..3344938	+	380	192361338	-	CJA_2859	-	beta-lactamase
2792	 53.33	0	3344929..3345168	-	79	192359095	-	CJA_2858	-	hypothetical protein
2793	 60.67	+1	3345246..3345545	+	99	192359275	-	CJA_2861	-	hypothetical protein
2794	 59.88	+1	3345353..3345514	-	53	192361049	-	CJA_2860	-	hypothetical protein
2795	 46.40	-1	3345711..3347294	-	527	192360839	-	CJA_2862	-	IS66 family element, transposase
2796	 45.30	-1	3347333..3347683	-	116	192361407	-	CJA_2863	-	IS66 family element, Orf2 protein
2797	 51.11	0	3347680..3347994	-	104	192360173	-	CJA_2864	-	IS66 family element, Orf1 protein
2798	 51.53	0	3348089..3349726	-	545	192358957	-	CJA_2865	-	hypothetical protein
2799	 45.21	-1	3349822..3350259	+	145	192361127	-	CJA_2866	-	hypothetical protein
2800	 57.80	+1	3350400..3352271	-	623	192359939	-	CJA_2867	-	putative TonB-dependent receptor protein
2801	 58.42	+1	3352355..3353737	-	460	192358940	-	CJA_2868	-	Tat (twin-arginine translocation) pathway signal sequence domain protein
2802	 54.83	0	3353766..3360599	-	2277	192361849	cbp26A	CJA_2869	-	carbohydrate binding protein, putative, cbp26A
2803	 44.07	-1	3360659..3360835	+	58	192361137	-	CJA_2871	-	hypothetical protein
2804	 42.50	-1	3360747..3360866	-	39	192360061	-	CJA_2870	-	hypothetical protein
2805	 51.20	0	3361291..3363669	-	792	192361688	agd31A	CJA_2872	-	alpha-glucosidase, putative, adg31A
2806	 53.25	0	3363895..3365943	-	682	192361368	-	CJA_2873	-	iron transporter
2807	 51.48	0	3366047..3368350	-	767	192362415	-	CJA_2874	-	GGDEF domain protein
2808	 52.25	0	3368331..3368441	+	36	192359691	-	CJA_2875	-	hypothetical protein
2809	 55.27	0	3368630..3371095	+	821	192359807	-	CJA_2876	-	putative two-component, response regulator
2810	 56.62	0	3371369..3372532	+	387	192361807	-	CJA_2877	-	argD acetylornithine aminotransferase
2811	 54.03	0	3372580..3373497	+	305	192359088	argF	CJA_2878	-	ornithine carbamoyltransferase
2812	 49.58	0	3374020..3374493	+	157	192360181	-	CJA_2879	-	hypothetical protein
2813	 52.19	0	3374576..3375625	-	349	192359222	-	CJA_2880	-	hypothetical protein
2814	 47.39	0	3375796..3377310	-	504	192359954	-	CJA_2881	-	tryptophan halogenase
2815	 49.05	0	3377427..3380435	-	1002	192360688	-	CJA_2882	-	TonB-dependent receptor
2816	 45.83	-1	3380591..3380686	+	31	192359102	-	CJA_2883	-	hypothetical protein
2817	 54.37	0	3381373..3382128	-	251	192359859	lmt23D	CJA_2884	-	lytic murein transglycosylase, putative, lmt23D
2818	 58.88	+1	3382332..3382832	-	166	192360709	-	CJA_2885	-	hypothetical protein
2819	 54.19	0	3382948..3385344	-	798	192359630	-	CJA_2886	-	DNA polymerase II
2820	 53.34	0	3385495..3387693	-	732	192359625	gla67A	CJA_2887	-	alpha-glucuronidase, gla67A
2821	 51.36	0	3387875..3389011	+	378	192360437	xyn10D	CJA_2888	-	endo-1,4-beta-xylanase, xyn10D
2822	 49.91	0	3389049..3390152	-	367	192361297	axe2B	CJA_2889	-	acetyl xylan esterase, putative, axe2B
2823	 50.00	0	3390149..3390280	-	43	192360152	-	CJA_2890	-	hypothetical protein
2824	 56.26	0	3390304..3392493	-	729	192362281	-	CJA_2891	-	catalase/peroxidase HPI
2825	 49.93	0	3392729..3393445	-	238	192361227	ugpQ	CJA_2892	-	Glycerophosphoryl diester phosphodiesterase
2826	 40.86	-2	3393460..3393552	+	30	192361390	-	CJA_2893	-	hypothetical protein
2827	 45.26	-1	3393545..3394114	+	189	192360383	-	CJA_2894	-	Small-conductance mechanosensitive channel
2828	 57.46	0	3394193..3395572	-	459	192358888	maspC	CJA_2895	-	aspartate aminotransferase
2829	 58.95	+1	3395525..3396625	+	366	192359467	cobT	CJA_2896	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
2830	 51.94	0	3396652..3397398	+	248	192362163	cobS	CJA_2897	-	cobalamin 5'-phosphate synthase
2831	 58.17	+1	3397395..3398006	+	203	192360762	-	CJA_2898	-	fructose-2;6-bisphosphatase
2832	 57.46	0	3398041..3399474	+	477	192360921	-	CJA_2900	-	MATE efflux family protein
2833	 55.13	0	3399446..3400234	-	262	192360525	-	CJA_2899	-	HAD-superfamily subfamily IIA hydrolase, TIGR01458
2834	 54.80	0	3400415..3401467	+	350	192362191	hisC	CJA_2901	-	histidinol-phosphate aminotransferase
2835	 58.11	+1	3401530..3403878	-	782	192358829	-	CJA_2902	-	putative lipoprotein
2836	 52.70	0	3404118..3406007	-	629	192360165	parE	CJA_2903	-	DNA topoisomerase IV, B subunit
2837	 56.08	0	3406047..3406622	-	191	192360503	-	CJA_2904	-	hypothetical protein
2838	 53.13	0	3406633..3407415	-	260	192361831	uvs099	CJA_2905	-	Uvs099
2839	 46.30	-1	3407530..3407637	-	35	192359805	-	CJA_2906	-	hypothetical protein
2840	 51.31	0	3407643..3408137	-	164	192361498	uvs098	CJA_2907	-	Uvs098
2841	 52.86	0	3408234..3408863	-	209	192362013	-	CJA_2908	-	conserved hypothetical protein TIGR00052
2842	 52.28	0	3408877..3410787	-	636	192359139	thiC	CJA_2909	-	thiamin biosynthesis protein ThiC
2843	 56.97	0	3410831..3411634	-	267	192359957	thiD	CJA_2910	-	phosphomethylpyrimidine kinase
2844	 54.21	0	3411859..3413094	-	411	192360894	-	CJA_2911	-	putative pH regulated Na(+)/H(+) antiporter
2845	 49.84	0	3413256..3414515	-	419	192360899	-	CJA_2912	-	putative Na+/H+ antiporter NhaD
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.