IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2711	 47.21	0	3261347..3262924	-	525	192360526	-	CJA_2775	-	sodium/glucose cotransport protein
2712	 54.58	0	3263075..3263860	-	261	192361404	-	CJA_2776	-	short chain dehydrogenase/reductase
2713	 54.43	0	3263922..3264632	-	236	192362231	-	CJA_2777	-	transcriptional regulator, GntR family
2714	 53.39	0	3264845..3265567	-	240	192359292	phoU	CJA_2778	-	phosphate transport system regulatory protein PhoU
2715	 48.59	0	3265588..3266400	-	270	192362353	pstB	CJA_2779	-	phosphate ABC transporter, ATP-binding protein
2716	 50.62	0	3266424..3268112	-	562	192361546	pstA	CJA_2780	-	phosphate ABC transporter, permease protein
2717	 50.44	0	3268142..3270427	-	761	192361176	pstC	CJA_2781	-	phosphate ABC transporter, permease protein
2718	 51.03	0	3270591..3271562	-	323	192360067	pstS	CJA_2782	-	phosphate binding protein
2719	 52.14	0	3271827..3272246	-	139	192359008	sspB	CJA_2783	-	stringent starvation protein B
2720	 52.06	0	3272349..3274586	-	745	192361817	petB	CJA_2784	-	ubiquinol--cytochrome c reductase, cytochrome b
2721	 53.50	0	3274588..3275187	-	199	192360698	petA	CJA_2785	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
2722	 54.20	0	3275437..3275829	-	130	192359611	rpsI	CJA_2786	-	ribosomal protein S9
2723	 48.72	0	3275843..3276271	-	142	192362308	rplM	CJA_2787	-	ribosomal protein L13
2724	 55.44	0	3276361..3277500	-	379	192361240	-	CJA_2788	-	Predicted ATPase
2725	 51.70	0	3277632..3278132	+	166	192359890	-	CJA_2790	-	hypothetical protein
2726	 55.60	0	3278129..3278806	-	225	192358843	-	CJA_2789	-	hypothetical protein
2727	 54.44	0	3278943..3279449	+	168	192360561	-	CJA_2791	-	hypothetical protein
2728	 54.31	0	3279547..3280671	+	374	192359504	algW	CJA_2792	-	AlgW protein
2729	 52.01	0	3280741..3282330	-	529	192359020	-	CJA_2793	-	ABC transporter, ATP-binding protein
2730	 56.24	0	3282407..3283777	-	456	192361752	hisD	CJA_2794	-	histidinol dehydrogenase
2731	 53.45	0	3283982..3284662	-	226	192361191	hisG	CJA_2795	-	ATP phosphoribosyltransferase
2732	 56.37	0	3284634..3285896	-	420	192362272	murA	CJA_2796	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2733	 50.40	0	3285945..3286196	-	83	192362293	-	CJA_2797	-	BolA/YrbA family protein
2734	 49.37	0	3286388..3287023	-	211	192361198	-	CJA_2798	-	Toluene tolerance, Ttg2 superfamily
2735	 44.76	-1	3287231..3287335	-	34	192359566	-	CJA_2799	-	hypothetical protein
2736	 51.85	0	3287334..3288305	+	323	192362290	-	CJA_2800	-	sugar isomerase, KpsF/GutQ family subfamily
2737	 57.27	0	3288330..3288872	+	180	192361802	-	CJA_2801	-	phosphatase, YrbI family
2738	 52.87	0	3288875..3289483	+	202	192358832	-	CJA_2802	-	hypothetical protein
2739	 53.48	0	3289455..3289985	+	176	192360382	-	CJA_2803	-	OstA-like protein superfamily
2740	 52.58	0	3289942..3290715	+	257	192361409	-	CJA_2804	-	ABC transporter, ATP-binding protein
2741	 50.98	0	3290853..3290954	-	33	192359140	-	CJA_2805	-	hypothetical protein
2742	 51.93	0	3290956..3292584	+	542	192359257	rpoN	CJA_2806	-	RNA polymerase sigma-54 factor
2743	 44.33	-1	3292708..3292998	+	96	192360786	yfiA	CJA_2807	-	ribosomal subunit interface protein
2744	 55.26	0	3293076..3293522	+	148	192361781	ptsN	CJA_2808	-	phosphotransferase enzyme IIA
2745	 52.24	0	3293534..3294427	+	297	192359478	-	CJA_2809	-	hypothetical protein
2746	 54.95	0	3294408..3294680	+	90	192359737	pstH	CJA_2810	-	Phosphocarrier protein HPr (Histidine-containing protein)
2747	 52.60	0	3294747..3295265	+	172	192358834	-	CJA_2812	-	hypothetical protein
2748	 56.37	0	3295234..3299517	-	1427	192359882	-	CJA_2811	-	hypothetical protein
2749	 56.73	0	3299566..3301035	-	489	192362515	-	CJA_2813	-	ribonuclease, Rne/Rng family
2750	 60.47	+1	3301032..3301709	-	225	192361461	-	CJA_2814	-	septum formation protein Maf
2751	 52.47	0	3301664..3302149	-	161	192359560	-	CJA_2815	-	putative rod shape-determining protein MreD
2752	 57.76	+1	3302149..3302979	-	276	192362313	mreC	CJA_2816	-	rod shape-determining protein MreC
2753	 55.85	0	3303101..3304135	-	344	192362019	mreB	CJA_2817	-	rod shape-determining protein MreB
2754	 52.67	0	3304322..3304864	+	180	192360948	gatC	CJA_2818	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
2755	 57.39	0	3304947..3306401	+	484	192359738	gatA	CJA_2819	-	glutamyl-tRNA(Gln) amidotransferase subunit A
2756	 53.39	0	3306413..3307858	+	481	192362412	gatB	CJA_2820	-	glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit subfamily
2757	 50.84	0	3307870..3308166	+	98	192359690	-	CJA_2821	-	hypothetical protein
2758	 47.22	0	3308302..3309453	+	383	192360697	-	CJA_2822	-	ISCja2, transposase
2759	 52.60	0	3309514..3310167	-	217	192360671	-	CJA_2823	-	OmpA family protein
2760	 47.62	0	3310459..3310983	+	174	192361944	inlE	CJA_2824	-	internalin E
2761	 47.92	0	3311019..3311162	-	47	192359204	-	CJA_2825	-	hypothetical protein
2762	 49.59	0	3311175..3311297	-	40	192360290	-	CJA_2826	-	hypothetical protein
2763	 49.79	0	3311495..3312205	-	236	192360737	purC	CJA_2827	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2764	 55.38	0	3312242..3313012	-	256	192361468	-	CJA_2828	-	metallo-beta-lactamase superfamily domain protein
2765	 52.72	0	3313013..3314260	-	415	192359024	-	CJA_2829	-	putative lipoprotein
2766	 54.30	0	3314283..3315155	-	290	192359293	dapA	CJA_2830	-	dihydrodipicolinate synthase
2767	 54.73	0	3315276..3316331	-	351	192359175	nadA	CJA_2831	-	quinolinate synthetase complex, A subunit
2768	 51.98	0	3317059..3320979	+	1306	192359980	-	CJA_2834	-	sensory box protein
2769	 55.60	0	3320985..3321662	-	225	192361867	-	CJA_2835	-	exsB protein
2770	 55.99	0	3321699..3322457	-	252	192361070	-	CJA_2836	-	radical SAM domain protein
2771	 59.68	+1	3322519..3322833	+	104	192359299	-	CJA_2838	-	hypothetical protein
2772	 54.88	0	3322830..3323822	-	330	192362294	adrA	CJA_2837	-	YaiC/YhcK/ArdA family protein
2773	 54.02	0	3324065..3325021	-	318	192362266	corA	CJA_2839	-	magnesium and cobalt transport protein CorA
2774	 55.80	0	3325138..3326103	-	321	192361183	htrB	CJA_2840	-	lipid A biosynthesis lauroyl acyltransferase
2775	 54.48	0	3326237..3326515	-	92	192361007	-	CJA_2841	-	hypothetical protein
2776	 56.00	0	3326504..3326653	+	49	192361687	-	CJA_2842	-	hypothetical protein
2777	 51.89	0	3326683..3327000	-	105	192362108	-	CJA_2843	-	glutaredoxin homolog
2778	 46.08	-1	3327091..3327192	-	33	192361451	-	CJA_2844	-	hypothetical protein
2779	 57.86	+1	3327245..3328663	+	472	192360443	baeS	CJA_2845	-	Sensory transduction histidine kinase
2780	 52.94	0	3328685..3329347	+	220	192359567	baeR	CJA_2846	-	DNA-binding response regulator
2781	 52.45	0	3329453..3330310	+	285	192362256	-	CJA_2848	-	protocatechuate dioxygenase
2782	 59.59	+1	3330307..3332751	-	814	192360974	-	CJA_2847	-	putative HrpA-like helicase
2783	 58.20	+1	3332793..3336041	-	1082	192360000	-	CJA_2849	-	two-component system sensor histidine kinase/response regulator, hybrid (one-component system)
2784	 47.37	0	3336142..3336255	-	37	192358974	-	CJA_2850	-	hypothetical protein
2785	 56.62	0	3336264..3338165	-	633	192361712	-	CJA_2851	-	hypothetical protein
2786	 40.62	-2	3338423..3338518	+	31	192359749	-	CJA_2852	-	hypothetical protein
2787	 42.64	-1	3338546..3339652	+	368	192359369	-	CJA_2853	-	hypothetical protein
2788	 51.11	0	3339721..3340035	+	104	192361894	-	CJA_2854	-	IS66 family element, Orf1 protein
2789	 46.40	-1	3340413..3341981	+	522	192359788	-	CJA_2856	-	IS66 family element, transposase
2790	 47.22	0	3342147..3343298	+	383	192358976	-	CJA_2857	-	ISCja2, transposase
2791	 42.43	-1	3343796..3344938	+	380	192361338	-	CJA_2859	-	beta-lactamase
2792	 53.33	0	3344929..3345168	-	79	192359095	-	CJA_2858	-	hypothetical protein
2793	 60.67	+1	3345246..3345545	+	99	192359275	-	CJA_2861	-	hypothetical protein
2794	 59.88	+1	3345353..3345514	-	53	192361049	-	CJA_2860	-	hypothetical protein
2795	 46.40	-1	3345711..3347294	-	527	192360839	-	CJA_2862	-	IS66 family element, transposase
2796	 45.30	-1	3347333..3347683	-	116	192361407	-	CJA_2863	-	IS66 family element, Orf2 protein
2797	 51.11	0	3347680..3347994	-	104	192360173	-	CJA_2864	-	IS66 family element, Orf1 protein
2798	 51.53	0	3348089..3349726	-	545	192358957	-	CJA_2865	-	hypothetical protein
2799	 45.21	-1	3349822..3350259	+	145	192361127	-	CJA_2866	-	hypothetical protein
2800	 57.80	+1	3350400..3352271	-	623	192359939	-	CJA_2867	-	putative TonB-dependent receptor protein
2801	 58.42	+1	3352355..3353737	-	460	192358940	-	CJA_2868	-	Tat (twin-arginine translocation) pathway signal sequence domain protein
2802	 54.83	0	3353766..3360599	-	2277	192361849	cbp26A	CJA_2869	-	carbohydrate binding protein, putative, cbp26A
2803	 44.07	-1	3360659..3360835	+	58	192361137	-	CJA_2871	-	hypothetical protein
2804	 42.50	-1	3360747..3360866	-	39	192360061	-	CJA_2870	-	hypothetical protein
2805	 51.20	0	3361291..3363669	-	792	192361688	agd31A	CJA_2872	-	alpha-glucosidase, putative, adg31A
2806	 53.25	0	3363895..3365943	-	682	192361368	-	CJA_2873	-	iron transporter
2807	 51.48	0	3366047..3368350	-	767	192362415	-	CJA_2874	-	GGDEF domain protein
2808	 52.25	0	3368331..3368441	+	36	192359691	-	CJA_2875	-	hypothetical protein
2809	 55.27	0	3368630..3371095	+	821	192359807	-	CJA_2876	-	putative two-component, response regulator
2810	 56.62	0	3371369..3372532	+	387	192361807	-	CJA_2877	-	argD acetylornithine aminotransferase
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.