IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2629	 51.08	0	3165084..3165590	-	168	192359459	nusB	CJA_2693	-	transcription antitermination factor NusB
2630	 52.12	0	3165684..3166178	-	164	192361378	ribH	CJA_2694	-	6,7-dimethyl-8-ribityllumazine synthase
2631	 57.37	0	3166198..3167316	-	372	192362101	ribB/A	CJA_2695	-	bifunctional protein 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II
2632	 52.27	0	3167353..3168012	-	219	192361915	ribE	CJA_2696	-	riboflavin synthase, alpha subunit
2633	 55.31	0	3168021..3168566	-	181	192358975	-	CJA_2697	-	RDD family domain protein
2634	 60.85	+1	3168651..3169802	-	383	192359452	ribD	CJA_2698	-	riboflavin biosynthesis protein RibD
2635	 53.41	0	3169806..3170303	-	165	192362177	-	CJA_2699	-	conserved hypothetical protein TIGR00244
2636	 52.72	0	3170351..3171196	-	281	192360101	-	CJA_2700	-	putative amino acid ABC transporter, periplasmic amino acid-binding portion
2637	 53.23	0	3171196..3171984	-	262	192359461	-	CJA_2701	-	GGDEF domain protein
2638	 51.41	0	3172037..3172744	-	235	192359041	-	CJA_2702	-	hypothetical protein
2639	 54.27	0	3173003..3174268	-	421	192360731	glyA	CJA_2703	-	serine hydroxymethyltransferase
2640	 49.02	0	3174315..3174467	-	50	192358869	-	CJA_2704	-	hypothetical protein
2641	 49.07	0	3174749..3175288	+	179	192359610	-	CJA_2705	-	hypothetical protein
2642	 49.58	0	3175359..3178325	-	988	192362416	xyl31A	CJA_2706	-	alpha-xylosidase, putative, xyl31A
2643	 47.63	0	3178366..3180093	-	575	192361337	bgl35A	CJA_2707	-	beta-galactosidase, putative, bgl35A
2644	 30.56	-2	3180130..3180237	+	35	192361737	-	CJA_2708	-	hypothetical protein
2645	 44.23	-1	3180292..3183192	-	966	192358982	-	CJA_2709	-	TonB-dependent receptor
2646	 50.66	0	3183280..3185628	-	782	192360052	afc95A	CJA_2710	-	alpha-L-fucosidase, putative, afc95A
2647	 43.75	-1	3185748..3185891	+	47	192362088	-	CJA_2711	-	hypothetical protein
2648	 47.31	0	3185897..3185989	-	30	192359259	-	CJA_2712	-	hypothetical protein
2649	 48.52	0	3186035..3187522	-	495	192359236	-	CJA_2713	-	tryptophan halogenase
2650	 51.95	0	3187708..3188679	+	323	192359879	-	CJA_2714	-	hypothetical protein
2651	 50.86	0	3188746..3189852	+	368	192360942	-	CJA_2715	-	putative outer membrane phospholipase A precursor
2652	 49.04	0	3189930..3190292	-	120	192359571	-	CJA_2716	-	hypothetical protein
2653	 51.76	0	3190294..3192741	-	815	192360637	-	CJA_2717	-	hypothetical protein
2654	 52.69	0	3193371..3194429	+	352	192361203	-	CJA_2718	-	ABC transporter, periplasmic substrate-binding protein
2655	 53.36	0	3194507..3195325	+	272	192362314	-	CJA_2719	-	ABC transporter, permease protein
2656	 56.20	0	3195398..3196171	+	257	192359042	-	CJA_2720	-	ABC transporter, ATP-binding protein
2657	 55.28	0	3196202..3196939	+	245	192360110	-	CJA_2721	-	hypothetical protein
2658	 56.54	0	3196957..3197598	+	213	192361957	-	CJA_2722	-	hypothetical protein
2659	 56.58	0	3197686..3201303	+	1205	192360281	-	CJA_2723	-	urea amidolyase homolog
2660	 50.53	0	3201370..3203835	-	821	192359401	-	CJA_2724	-	hypothetical protein
2661	 51.53	0	3204037..3204921	+	294	192361900	nadC	CJA_2725	-	nicotinate-nucleotide pyrophosphorylase
2662	 43.41	-1	3204955..3207981	-	1008	192360746	-	CJA_2726	-	spermine/spermidine synthase family protein
2663	 42.61	-1	3208083..3208826	-	247	192362377	tfpZ	CJA_2727	-	type IV pilin accessory protein
2664	 44.03	-1	3208852..3209337	-	161	192361536	pilA	CJA_2728	-	Fimbrial protein precursor (Pilin)
2665	 43.31	-1	3209443..3209943	-	166	192360207	-	CJA_2729	-	pilin
2666	 52.21	0	3210370..3212091	+	573	192359380	pilB	CJA_2730	-	PilB protein
2667	 42.35	-1	3212098..3213384	+	428	192359121	pilC	CJA_2731	-	type IV pilus biogenesis protein PilC
2668	 45.95	-1	3213438..3214364	+	308	192361521	pilD	CJA_2732	-	type IV pilus prepilin peptidase PilD
2669	 53.56	0	3214376..3214993	+	205	192361697	coaE	CJA_2733	-	dephospho-CoA kinase
2670	 45.50	-1	3214993..3215214	+	73	192360822	-	CJA_2734	-	Domain of unknown function (DUF329) family
2671	 51.55	0	3215229..3216293	-	354	192360453	-	CJA_2735	-	hypothetical protein
2672	 52.95	0	3216329..3216802	-	157	192359628	-	CJA_2736	-	hypothetical protein
2673	 52.81	0	3216839..3217567	-	242	192362100	-	CJA_2737	-	putative lipoprotein
2674	 56.44	0	3217795..3219612	+	605	192361322	dsbD	CJA_2738	-	c-type cytochrome biogenesis protein
2675	 51.90	0	3219939..3220385	+	148	192359068	aroQ	CJA_2739	-	3-dehydroquinate dehydratase, type II
2676	 52.54	0	3220369..3220899	+	176	192362016	accB	CJA_2740	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
2677	 55.48	0	3220958..3222298	+	446	192358837	accC	CJA_2741	-	acetyl-CoA carboxylase, biotin carboxylase
2678	 57.74	+1	3222374..3223258	+	294	192361804	prmA	CJA_2742	-	ribosomal protein L11 methyltransferase
2679	 56.84	0	3223460..3224986	+	508	192360079	-	CJA_2743	-	MJ0042 family finger-like domain protein
2680	 53.92	0	3225216..3226172	+	318	192359144	-	CJA_2744	-	hypothetical protein
2681	 56.26	0	3226410..3227399	+	329	192361714	-	CJA_2745	-	tRNA-dihydrouridine synthase
2682	 56.12	0	3227396..3227689	+	97	192360799	fis	CJA_2746	-	Hin recombinational enhancer binding protein
2683	 54.31	0	3227792..3229369	+	525	192360490	purH	CJA_2747	-	bifunctional purine biosynthesis protein PurH
2684	 55.68	0	3229379..3230716	+	445	192359687	purD	CJA_2748	-	phosphoribosylamine--glycine ligase
2685	 50.94	0	3230799..3231383	+	194	192362169	-	CJA_2749	-	hypothetical protein
2686	 52.49	0	3231404..3232489	-	361	192361365	-	CJA_2750	-	Zn-dependent protease
2687	 50.78	0	3232569..3233399	+	276	192358933	-	CJA_2751	-	nucleic acid binding protein
2688	 53.69	0	3233403..3234404	+	333	192359375	-	CJA_2753	-	oxidoreductase
2689	 51.89	0	3234390..3234971	-	193	192359732	-	CJA_2752	-	hypothetical protein
2690	 50.72	0	3234996..3235484	-	162	192362350	-	CJA_2754	-	hypothetical protein
2691	 53.26	0	3235547..3236098	+	183	192360075	-	CJA_2755	-	hypothetical protein
2692	 52.38	0	3236419..3236670	+	83	192359240	-	CJA_2756	-	oxaloacetate decarboxylase gamma chain
2693	 57.74	+1	3236684..3238465	+	593	192361727	oadA	CJA_2757	-	oxaloacetate decarboxylase alpha subunit
2694	 58.20	+1	3238476..3239786	+	436	192360791	-	CJA_2758	-	oxaloacetate decarboxylase beta chain
2695	 53.81	0	3239858..3241366	-	502	192360616	glu16F	CJA_2759	-	beta glucanase, putative, glu16F
2696	 54.45	0	3241840..3243591	-	583	192359399	cel5G	CJA_2760	-	cellulase, putative, cel5G
2697	 45.00	-1	3243796..3243915	-	39	192360179	-	CJA_2761	-	hypothetical protein
2698	 48.51	0	3243918..3245090	+	390	192361344	-	CJA_2762	-	transcriptional regulator, AraC family domain protein
2699	 58.24	+1	3245151..3249041	-	1296	192360544	glu16E	CJA_2763	-	beta glucanase, putative, gly16E
2700	 56.86	0	3249333..3250505	-	390	192359169	-	CJA_2764	-	glutathionylspermidine synthase family protein
2701	 60.28	+1	3250509..3251087	-	192	192362155	-	CJA_2765	-	putative lipoprotein
2702	 56.76	0	3251113..3251526	-	137	192359422	-	CJA_2766	-	predicted membrane protein
2703	 54.17	0	3251798..3252805	+	335	192360369	-	CJA_2767	-	PEP-CTERM putative exosortase interaction domain protein
2704	 52.85	0	3252939..3253850	+	303	192359781	cysK	CJA_2768	-	cysteine synthase A
2705	 54.57	0	3253936..3255489	-	517	192362501	abf51A	CJA_2769	-	alpha-L-arabinofuranosidase, abf51A
2706	 53.93	0	3255673..3256944	-	423	192359006	man26A	CJA_2770	-	endo-1, 4-beta mannanase, man26A
2707	 56.03	0	3257173..3257520	-	115	192359806	-	CJA_2771	-	pentapeptide repeat domain protein
2708	 54.66	0	3257984..3259399	+	471	192359962	uxaC	CJA_2772	-	Glucuronate isomerase
2709	 52.84	0	3259475..3260407	+	310	192359655	-	CJA_2774	-	hypothetical protein
2710	 54.30	0	3260370..3261275	-	301	192360760	-	CJA_2773	-	regucalcin
2711	 47.21	0	3261347..3262924	-	525	192360526	-	CJA_2775	-	sodium/glucose cotransport protein
2712	 54.58	0	3263075..3263860	-	261	192361404	-	CJA_2776	-	short chain dehydrogenase/reductase
2713	 54.43	0	3263922..3264632	-	236	192362231	-	CJA_2777	-	transcriptional regulator, GntR family
2714	 53.39	0	3264845..3265567	-	240	192359292	phoU	CJA_2778	-	phosphate transport system regulatory protein PhoU
2715	 48.59	0	3265588..3266400	-	270	192362353	pstB	CJA_2779	-	phosphate ABC transporter, ATP-binding protein
2716	 50.62	0	3266424..3268112	-	562	192361546	pstA	CJA_2780	-	phosphate ABC transporter, permease protein
2717	 50.44	0	3268142..3270427	-	761	192361176	pstC	CJA_2781	-	phosphate ABC transporter, permease protein
2718	 51.03	0	3270591..3271562	-	323	192360067	pstS	CJA_2782	-	phosphate binding protein
2719	 52.14	0	3271827..3272246	-	139	192359008	sspB	CJA_2783	-	stringent starvation protein B
2720	 52.06	0	3272349..3274586	-	745	192361817	petB	CJA_2784	-	ubiquinol--cytochrome c reductase, cytochrome b
2721	 53.50	0	3274588..3275187	-	199	192360698	petA	CJA_2785	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
2722	 54.20	0	3275437..3275829	-	130	192359611	rpsI	CJA_2786	-	ribosomal protein S9
2723	 48.72	0	3275843..3276271	-	142	192362308	rplM	CJA_2787	-	ribosomal protein L13
2724	 55.44	0	3276361..3277500	-	379	192361240	-	CJA_2788	-	Predicted ATPase
2725	 51.70	0	3277632..3278132	+	166	192359890	-	CJA_2790	-	hypothetical protein
2726	 55.60	0	3278129..3278806	-	225	192358843	-	CJA_2789	-	hypothetical protein
2727	 54.44	0	3278943..3279449	+	168	192360561	-	CJA_2791	-	hypothetical protein
2728	 54.31	0	3279547..3280671	+	374	192359504	algW	CJA_2792	-	AlgW protein
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.