IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2579	 56.87	0	3108592..3110112	-	506	192360765	-	CJA_2642	-	fumarate hydratase, class I
2580	 57.22	0	3110245..3111027	+	260	192359289	-	CJA_2644	-	hypothetical protein
2581	 57.27	0	3110275..3111051	-	258	192360010	-	CJA_2643	-	hypothetical protein
2582	 50.43	0	3111223..3111807	-	194	192360362	-	CJA_2645	-	superoxide dismutase
2583	 54.15	0	3112046..3113683	-	545	192359320	groL	CJA_2646	-	chaperonin GroEL
2584	 51.14	0	3113746..3114273	-	175	192360354	groES	CJA_2647	-	GroES protein
2585	 58.84	+1	3114312..3114809	-	165	192361548	fsxA	CJA_2648	-	fxsA protein
2586	 54.18	0	3114843..3115859	-	338	192361650	-	CJA_2649	-	hypothetical protein
2587	 62.42	+1	3116051..3116380	+	109	192360074	-	CJA_2651	-	MGMT family protein
2588	 57.27	0	3116337..3117773	-	478	192358898	-	CJA_2650	-	AmpG protein
2589	 50.10	0	3117793..3118275	-	160	192362145	-	CJA_2652	-	hypothetical protein
2590	 53.23	0	3118315..3119304	-	329	192361906	-	CJA_2653	-	putative AmpE
2591	 54.64	0	3119315..3119863	-	182	192360470	ampD	CJA_2654	-	N-acetyl-anhydromuramyl-L-alanine amidase AmpD
2592	 57.74	+1	3119869..3121392	-	507	192361342	-	CJA_2655	-	probable ATPase
2593	 62.04	+1	3121547..3122194	+	215	192359082	-	CJA_2656	-	hypothetical protein
2594	 58.97	+1	3122536..3127809	+	1757	192360029	cbp32B	CJA_2657	-	carbohydrate binding protein, putative, cbp32B
2595	 54.37	0	3127875..3128297	-	140	192358914	-	CJA_2658	-	OsmC/Ohr family protein
2596	 52.17	0	3128597..3129196	+	199	192359726	-	CJA_2659	-	cyclic AMP receptor-like protein
2597	 54.07	0	3129270..3130166	-	298	192361959	trpC	CJA_2660	-	indole-3-glycerol phosphate synthase
2598	 53.68	0	3130120..3131151	-	343	192359500	trpD	CJA_2661	-	anthranilate phosphoribosyltransferase
2599	 50.17	0	3131254..3131835	-	193	192360584	trpG	CJA_2662	-	anthranilate synthase component II
2600	 54.92	0	3131832..3133346	-	504	192361771	trpE	CJA_2663	-	anthranilate synthase component I
2601	 53.53	0	3133646..3134368	-	240	192359547	-	CJA_2664	-	rRNA methylase
2602	 55.80	0	3134382..3136001	-	539	192360573	-	CJA_2665	-	uncharacterized FAD-dependent dehydrogenase
2603	 51.14	0	3136058..3136759	-	233	192361209	rpe	CJA_2666	-	ribulose-phosphate 3-epimerase
2604	 53.87	0	3136825..3137934	+	369	192359669	-	CJA_2667	-	hypothetical protein
2605	 51.73	0	3138237..3139073	-	278	192360557	-	CJA_2668	-	DTW domain protein
2606	 51.96	0	3139140..3139547	-	135	192361247	-	CJA_2670	-	putative preprotein translocase SecG subunit
2607	 49.08	0	3139608..3140369	-	253	192362276	-	CJA_2671	-	triosephosphate isomerase
2608	 51.05	0	3140596..3141933	-	445	192360111	glmM	CJA_2672	-	phosphoglucosamine mutase
2609	 51.57	0	3141985..3142845	-	286	192360527	folP	CJA_2673	-	dihydropteroate synthase
2610	 52.77	0	3142917..3144830	-	637	192361874	ftsH	CJA_2674	-	cell division protein FtsH
2611	 52.99	0	3144878..3145513	-	211	192359469	rrmJ	CJA_2675	-	ribosomal RNA large subunit J
2612	 48.04	0	3145644..3145949	+	101	192359755	-	CJA_2676	-	hypothetical protein
2613	 52.40	0	3146073..3146759	-	228	192361017	-	CJA_2677	-	kinesin light chain-like protein
2614	 52.67	0	3146743..3149157	-	804	192359004	-	CJA_2678	-	putative lipoprotein
2615	 54.15	0	3149195..3151975	-	926	192359776	hasR	CJA_2679	-	HasR
2616	 56.55	0	3152164..3153132	-	322	192360635	-	CJA_2680	-	sigma factor regulatory protein, FecR/PupR family
2617	 54.53	0	3153331..3153849	-	172	192361496	-	CJA_2681	-	RNA polymerase sigma factor, sigma-70 family
2618	 59.06	+1	3154085..3154702	+	205	192361563	-	CJA_2682	-	Heme oxygenase
2619	 57.74	+1	3154702..3155082	+	126	192362458	-	CJA_2683	-	hypothetical protein
2620	 57.87	+1	3155079..3155885	+	268	192360206	-	CJA_2684	-	possible energy transducer TonB, C-terminal region
2621	 48.96	0	3155975..3156454	-	159	192360133	greA	CJA_2685	-	transcription elongation factor
2622	 54.55	0	3156470..3159688	-	1072	192362421	carB	CJA_2686	-	carbamoyl-phosphate synthase, large subunit
2623	 56.94	0	3159700..3160902	-	400	192361439	carA	CJA_2687	-	carbamoyl-phosphate synthase, small subunit
2624	 57.85	+1	3161429..3162256	-	275	192359909	dapB	CJA_2688	-	dihydrodipicolinate reductase
2625	 54.05	0	3162249..3162866	-	205	192358856	ribA	CJA_2689	-	GTP cyclohydrolase II
2626	 54.03	0	3162907..3163539	-	210	192362077	-	CJA_2690	-	putative conserved hypothetical protein TIGR02281
2627	 52.47	0	3163589..3164074	-	161	192360941	-	CJA_2691	-	Phosphatidylglycerophosphatase A
2628	 57.19	0	3164077..3165057	-	326	192360501	thiL	CJA_2692	-	thiamine-monophosphate kinase
2629	 51.08	0	3165084..3165590	-	168	192359459	nusB	CJA_2693	-	transcription antitermination factor NusB
2630	 52.12	0	3165684..3166178	-	164	192361378	ribH	CJA_2694	-	6,7-dimethyl-8-ribityllumazine synthase
2631	 57.37	0	3166198..3167316	-	372	192362101	ribB/A	CJA_2695	-	bifunctional protein 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II
2632	 52.27	0	3167353..3168012	-	219	192361915	ribE	CJA_2696	-	riboflavin synthase, alpha subunit
2633	 55.31	0	3168021..3168566	-	181	192358975	-	CJA_2697	-	RDD family domain protein
2634	 60.85	+1	3168651..3169802	-	383	192359452	ribD	CJA_2698	-	riboflavin biosynthesis protein RibD
2635	 53.41	0	3169806..3170303	-	165	192362177	-	CJA_2699	-	conserved hypothetical protein TIGR00244
2636	 52.72	0	3170351..3171196	-	281	192360101	-	CJA_2700	-	putative amino acid ABC transporter, periplasmic amino acid-binding portion
2637	 53.23	0	3171196..3171984	-	262	192359461	-	CJA_2701	-	GGDEF domain protein
2638	 51.41	0	3172037..3172744	-	235	192359041	-	CJA_2702	-	hypothetical protein
2639	 54.27	0	3173003..3174268	-	421	192360731	glyA	CJA_2703	-	serine hydroxymethyltransferase
2640	 49.02	0	3174315..3174467	-	50	192358869	-	CJA_2704	-	hypothetical protein
2641	 49.07	0	3174749..3175288	+	179	192359610	-	CJA_2705	-	hypothetical protein
2642	 49.58	0	3175359..3178325	-	988	192362416	xyl31A	CJA_2706	-	alpha-xylosidase, putative, xyl31A
2643	 47.63	0	3178366..3180093	-	575	192361337	bgl35A	CJA_2707	-	beta-galactosidase, putative, bgl35A
2644	 30.56	-2	3180130..3180237	+	35	192361737	-	CJA_2708	-	hypothetical protein
2645	 44.23	-1	3180292..3183192	-	966	192358982	-	CJA_2709	-	TonB-dependent receptor
2646	 50.66	0	3183280..3185628	-	782	192360052	afc95A	CJA_2710	-	alpha-L-fucosidase, putative, afc95A
2647	 43.75	-1	3185748..3185891	+	47	192362088	-	CJA_2711	-	hypothetical protein
2648	 47.31	0	3185897..3185989	-	30	192359259	-	CJA_2712	-	hypothetical protein
2649	 48.52	0	3186035..3187522	-	495	192359236	-	CJA_2713	-	tryptophan halogenase
2650	 51.95	0	3187708..3188679	+	323	192359879	-	CJA_2714	-	hypothetical protein
2651	 50.86	0	3188746..3189852	+	368	192360942	-	CJA_2715	-	putative outer membrane phospholipase A precursor
2652	 49.04	0	3189930..3190292	-	120	192359571	-	CJA_2716	-	hypothetical protein
2653	 51.76	0	3190294..3192741	-	815	192360637	-	CJA_2717	-	hypothetical protein
2654	 52.69	0	3193371..3194429	+	352	192361203	-	CJA_2718	-	ABC transporter, periplasmic substrate-binding protein
2655	 53.36	0	3194507..3195325	+	272	192362314	-	CJA_2719	-	ABC transporter, permease protein
2656	 56.20	0	3195398..3196171	+	257	192359042	-	CJA_2720	-	ABC transporter, ATP-binding protein
2657	 55.28	0	3196202..3196939	+	245	192360110	-	CJA_2721	-	hypothetical protein
2658	 56.54	0	3196957..3197598	+	213	192361957	-	CJA_2722	-	hypothetical protein
2659	 56.58	0	3197686..3201303	+	1205	192360281	-	CJA_2723	-	urea amidolyase homolog
2660	 50.53	0	3201370..3203835	-	821	192359401	-	CJA_2724	-	hypothetical protein
2661	 51.53	0	3204037..3204921	+	294	192361900	nadC	CJA_2725	-	nicotinate-nucleotide pyrophosphorylase
2662	 43.41	-1	3204955..3207981	-	1008	192360746	-	CJA_2726	-	spermine/spermidine synthase family protein
2663	 42.61	-1	3208083..3208826	-	247	192362377	tfpZ	CJA_2727	-	type IV pilin accessory protein
2664	 44.03	-1	3208852..3209337	-	161	192361536	pilA	CJA_2728	-	Fimbrial protein precursor (Pilin)
2665	 43.31	-1	3209443..3209943	-	166	192360207	-	CJA_2729	-	pilin
2666	 52.21	0	3210370..3212091	+	573	192359380	pilB	CJA_2730	-	PilB protein
2667	 42.35	-1	3212098..3213384	+	428	192359121	pilC	CJA_2731	-	type IV pilus biogenesis protein PilC
2668	 45.95	-1	3213438..3214364	+	308	192361521	pilD	CJA_2732	-	type IV pilus prepilin peptidase PilD
2669	 53.56	0	3214376..3214993	+	205	192361697	coaE	CJA_2733	-	dephospho-CoA kinase
2670	 45.50	-1	3214993..3215214	+	73	192360822	-	CJA_2734	-	Domain of unknown function (DUF329) family
2671	 51.55	0	3215229..3216293	-	354	192360453	-	CJA_2735	-	hypothetical protein
2672	 52.95	0	3216329..3216802	-	157	192359628	-	CJA_2736	-	hypothetical protein
2673	 52.81	0	3216839..3217567	-	242	192362100	-	CJA_2737	-	putative lipoprotein
2674	 56.44	0	3217795..3219612	+	605	192361322	dsbD	CJA_2738	-	c-type cytochrome biogenesis protein
2675	 51.90	0	3219939..3220385	+	148	192359068	aroQ	CJA_2739	-	3-dehydroquinate dehydratase, type II
2676	 52.54	0	3220369..3220899	+	176	192362016	accB	CJA_2740	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
2677	 55.48	0	3220958..3222298	+	446	192358837	accC	CJA_2741	-	acetyl-CoA carboxylase, biotin carboxylase
2678	 57.74	+1	3222374..3223258	+	294	192361804	prmA	CJA_2742	-	ribosomal protein L11 methyltransferase
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.