IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2555	 44.69	-1	3071501..3073375	+	624	192359349	amy13A	CJA_2618	-	alpha amylase, putative, amy13A
2556	 49.17	0	3073448..3074053	-	201	192360729	wapA	CJA_2619	-	Rhs family protein
2557	 46.02	-1	3074686..3075702	-	338	192359984	-	CJA_2620	-	hypothetical protein
2558	 45.87	-1	3076072..3076422	+	116	192359549	-	CJA_2621	-	IS66 family element, Orf2 protein
2559	 46.91	0	3076455..3078023	+	522	192361658	-	CJA_2622	-	IS66 family element, transposase
2560	 50.39	0	3078841..3086220	-	2459	192359575	-	CJA_2623	-	Rhs family protein
2561	 49.22	0	3086447..3086830	-	127	192359711	gloA	CJA_2624	-	lactoylglutathione lyase
2562	 50.47	0	3086950..3088647	-	565	192362127	-	CJA_2625	-	hypothetical protein
2563	 59.34	+1	3088788..3089579	-	263	192362456	-	CJA_2626	-	TRAP transporter, DctM-like membrane protein
2564	 48.15	0	3089576..3089791	-	71	192361231	ccoS	CJA_2627	-	cytochrome oxidase maturation protein, cbb3-type
2565	 56.88	0	3089810..3092230	-	806	192360364	-	CJA_2628	-	cation-transporting P-type ATPase
2566	 50.87	0	3092231..3092749	-	172	192360054	-	CJA_2629	-	hypothetical protein
2567	 50.04	0	3092821..3094233	-	470	192361907	-	CJA_2630	-	iron-sulfur cluster-binding protein
2568	 51.93	0	3094365..3095273	-	302	192361134	ccoP	CJA_2631	-	cytochrome c oxidase, cbb3-type, subunit III
2569	 50.26	0	3095292..3095486	-	64	192359857	-	CJA_2632	-	cytochrome c oxidase subunit-related protein
2570	 52.45	0	3095486..3096097	-	203	192359498	ccoO	CJA_2633	-	cytochrome c oxidase, cbb3-type, subunit II
2571	 53.43	0	3096108..3097565	-	485	192359815	ccoN	CJA_2634	-	cytochrome c oxidase, cbb3-type, subunit I
2572	 53.45	0	3097861..3099078	-	405	192358790	argG	CJA_2635	-	argininosuccinate synthase
2573	 55.12	0	3099430..3101325	-	631	192362043	-	CJA_2636	-	methyl-accepting chemotaxis protein
2574	 55.22	0	3101512..3103005	-	497	192360953	sbcB	CJA_2637	-	exodeoxyribonuclease I
2575	 52.06	0	3103241..3103870	+	209	192362093	-	CJA_2638	-	carbonic anhydrase
2576	 47.83	0	3103889..3106303	+	804	192360986	-	CJA_2639	-	PAS domain S-box protein
2577	 50.46	0	3106313..3108058	-	581	192360433	-	CJA_2640	-	putative response regulator
2578	 48.39	0	3108082..3108360	-	92	192359388	-	CJA_2641	-	putative SpoIIAA family protein
2579	 56.87	0	3108592..3110112	-	506	192360765	-	CJA_2642	-	fumarate hydratase, class I
2580	 57.22	0	3110245..3111027	+	260	192359289	-	CJA_2644	-	hypothetical protein
2581	 57.27	0	3110275..3111051	-	258	192360010	-	CJA_2643	-	hypothetical protein
2582	 50.43	0	3111223..3111807	-	194	192360362	-	CJA_2645	-	superoxide dismutase
2583	 54.15	0	3112046..3113683	-	545	192359320	groL	CJA_2646	-	chaperonin GroEL
2584	 51.14	0	3113746..3114273	-	175	192360354	groES	CJA_2647	-	GroES protein
2585	 58.84	+1	3114312..3114809	-	165	192361548	fsxA	CJA_2648	-	fxsA protein
2586	 54.18	0	3114843..3115859	-	338	192361650	-	CJA_2649	-	hypothetical protein
2587	 62.42	+1	3116051..3116380	+	109	192360074	-	CJA_2651	-	MGMT family protein
2588	 57.27	0	3116337..3117773	-	478	192358898	-	CJA_2650	-	AmpG protein
2589	 50.10	0	3117793..3118275	-	160	192362145	-	CJA_2652	-	hypothetical protein
2590	 53.23	0	3118315..3119304	-	329	192361906	-	CJA_2653	-	putative AmpE
2591	 54.64	0	3119315..3119863	-	182	192360470	ampD	CJA_2654	-	N-acetyl-anhydromuramyl-L-alanine amidase AmpD
2592	 57.74	+1	3119869..3121392	-	507	192361342	-	CJA_2655	-	probable ATPase
2593	 62.04	+1	3121547..3122194	+	215	192359082	-	CJA_2656	-	hypothetical protein
2594	 58.97	+1	3122536..3127809	+	1757	192360029	cbp32B	CJA_2657	-	carbohydrate binding protein, putative, cbp32B
2595	 54.37	0	3127875..3128297	-	140	192358914	-	CJA_2658	-	OsmC/Ohr family protein
2596	 52.17	0	3128597..3129196	+	199	192359726	-	CJA_2659	-	cyclic AMP receptor-like protein
2597	 54.07	0	3129270..3130166	-	298	192361959	trpC	CJA_2660	-	indole-3-glycerol phosphate synthase
2598	 53.68	0	3130120..3131151	-	343	192359500	trpD	CJA_2661	-	anthranilate phosphoribosyltransferase
2599	 50.17	0	3131254..3131835	-	193	192360584	trpG	CJA_2662	-	anthranilate synthase component II
2600	 54.92	0	3131832..3133346	-	504	192361771	trpE	CJA_2663	-	anthranilate synthase component I
2601	 53.53	0	3133646..3134368	-	240	192359547	-	CJA_2664	-	rRNA methylase
2602	 55.80	0	3134382..3136001	-	539	192360573	-	CJA_2665	-	uncharacterized FAD-dependent dehydrogenase
2603	 51.14	0	3136058..3136759	-	233	192361209	rpe	CJA_2666	-	ribulose-phosphate 3-epimerase
2604	 53.87	0	3136825..3137934	+	369	192359669	-	CJA_2667	-	hypothetical protein
2605	 51.73	0	3138237..3139073	-	278	192360557	-	CJA_2668	-	DTW domain protein
2606	 51.96	0	3139140..3139547	-	135	192361247	-	CJA_2670	-	putative preprotein translocase SecG subunit
2607	 49.08	0	3139608..3140369	-	253	192362276	-	CJA_2671	-	triosephosphate isomerase
2608	 51.05	0	3140596..3141933	-	445	192360111	glmM	CJA_2672	-	phosphoglucosamine mutase
2609	 51.57	0	3141985..3142845	-	286	192360527	folP	CJA_2673	-	dihydropteroate synthase
2610	 52.77	0	3142917..3144830	-	637	192361874	ftsH	CJA_2674	-	cell division protein FtsH
2611	 52.99	0	3144878..3145513	-	211	192359469	rrmJ	CJA_2675	-	ribosomal RNA large subunit J
2612	 48.04	0	3145644..3145949	+	101	192359755	-	CJA_2676	-	hypothetical protein
2613	 52.40	0	3146073..3146759	-	228	192361017	-	CJA_2677	-	kinesin light chain-like protein
2614	 52.67	0	3146743..3149157	-	804	192359004	-	CJA_2678	-	putative lipoprotein
2615	 54.15	0	3149195..3151975	-	926	192359776	hasR	CJA_2679	-	HasR
2616	 56.55	0	3152164..3153132	-	322	192360635	-	CJA_2680	-	sigma factor regulatory protein, FecR/PupR family
2617	 54.53	0	3153331..3153849	-	172	192361496	-	CJA_2681	-	RNA polymerase sigma factor, sigma-70 family
2618	 59.06	+1	3154085..3154702	+	205	192361563	-	CJA_2682	-	Heme oxygenase
2619	 57.74	+1	3154702..3155082	+	126	192362458	-	CJA_2683	-	hypothetical protein
2620	 57.87	+1	3155079..3155885	+	268	192360206	-	CJA_2684	-	possible energy transducer TonB, C-terminal region
2621	 48.96	0	3155975..3156454	-	159	192360133	greA	CJA_2685	-	transcription elongation factor
2622	 54.55	0	3156470..3159688	-	1072	192362421	carB	CJA_2686	-	carbamoyl-phosphate synthase, large subunit
2623	 56.94	0	3159700..3160902	-	400	192361439	carA	CJA_2687	-	carbamoyl-phosphate synthase, small subunit
2624	 57.85	+1	3161429..3162256	-	275	192359909	dapB	CJA_2688	-	dihydrodipicolinate reductase
2625	 54.05	0	3162249..3162866	-	205	192358856	ribA	CJA_2689	-	GTP cyclohydrolase II
2626	 54.03	0	3162907..3163539	-	210	192362077	-	CJA_2690	-	putative conserved hypothetical protein TIGR02281
2627	 52.47	0	3163589..3164074	-	161	192360941	-	CJA_2691	-	Phosphatidylglycerophosphatase A
2628	 57.19	0	3164077..3165057	-	326	192360501	thiL	CJA_2692	-	thiamine-monophosphate kinase
2629	 51.08	0	3165084..3165590	-	168	192359459	nusB	CJA_2693	-	transcription antitermination factor NusB
2630	 52.12	0	3165684..3166178	-	164	192361378	ribH	CJA_2694	-	6,7-dimethyl-8-ribityllumazine synthase
2631	 57.37	0	3166198..3167316	-	372	192362101	ribB/A	CJA_2695	-	bifunctional protein 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II
2632	 52.27	0	3167353..3168012	-	219	192361915	ribE	CJA_2696	-	riboflavin synthase, alpha subunit
2633	 55.31	0	3168021..3168566	-	181	192358975	-	CJA_2697	-	RDD family domain protein
2634	 60.85	+1	3168651..3169802	-	383	192359452	ribD	CJA_2698	-	riboflavin biosynthesis protein RibD
2635	 53.41	0	3169806..3170303	-	165	192362177	-	CJA_2699	-	conserved hypothetical protein TIGR00244
2636	 52.72	0	3170351..3171196	-	281	192360101	-	CJA_2700	-	putative amino acid ABC transporter, periplasmic amino acid-binding portion
2637	 53.23	0	3171196..3171984	-	262	192359461	-	CJA_2701	-	GGDEF domain protein
2638	 51.41	0	3172037..3172744	-	235	192359041	-	CJA_2702	-	hypothetical protein
2639	 54.27	0	3173003..3174268	-	421	192360731	glyA	CJA_2703	-	serine hydroxymethyltransferase
2640	 49.02	0	3174315..3174467	-	50	192358869	-	CJA_2704	-	hypothetical protein
2641	 49.07	0	3174749..3175288	+	179	192359610	-	CJA_2705	-	hypothetical protein
2642	 49.58	0	3175359..3178325	-	988	192362416	xyl31A	CJA_2706	-	alpha-xylosidase, putative, xyl31A
2643	 47.63	0	3178366..3180093	-	575	192361337	bgl35A	CJA_2707	-	beta-galactosidase, putative, bgl35A
2644	 30.56	-2	3180130..3180237	+	35	192361737	-	CJA_2708	-	hypothetical protein
2645	 44.23	-1	3180292..3183192	-	966	192358982	-	CJA_2709	-	TonB-dependent receptor
2646	 50.66	0	3183280..3185628	-	782	192360052	afc95A	CJA_2710	-	alpha-L-fucosidase, putative, afc95A
2647	 43.75	-1	3185748..3185891	+	47	192362088	-	CJA_2711	-	hypothetical protein
2648	 47.31	0	3185897..3185989	-	30	192359259	-	CJA_2712	-	hypothetical protein
2649	 48.52	0	3186035..3187522	-	495	192359236	-	CJA_2713	-	tryptophan halogenase
2650	 51.95	0	3187708..3188679	+	323	192359879	-	CJA_2714	-	hypothetical protein
2651	 50.86	0	3188746..3189852	+	368	192360942	-	CJA_2715	-	putative outer membrane phospholipase A precursor
2652	 49.04	0	3189930..3190292	-	120	192359571	-	CJA_2716	-	hypothetical protein
2653	 51.76	0	3190294..3192741	-	815	192360637	-	CJA_2717	-	hypothetical protein
2654	 52.69	0	3193371..3194429	+	352	192361203	-	CJA_2718	-	ABC transporter, periplasmic substrate-binding protein
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.