IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2415	 56.22	0	2835809..2838862	+	1017	192360902	gly74A	CJA_2477	-	endo-1,4-beta-glucanase/xyloglucanase, putative, gly74A
2416	 52.72	0	2838941..2840539	-	532	192359674	lysS	CJA_2478	-	lysyl-tRNA synthetase
2417	 55.25	0	2840490..2841479	-	329	192358804	prfB	CJA_2479	-	peptide chain release factor 2
2418	 56.47	0	2841845..2843305	+	486	192361333	man26B	CJA_2480	-	endo-1, 4-beta mannanase, man26B
2419	 57.86	+1	2843373..2844212	-	279	192362364	-	CJA_2481	-	CobQ/CobB/MinD/ParA nucleotide binding domain protein
2420	 55.92	0	2844335..2847424	-	1029	192359028	-	CJA_2482	-	AcrB/AcrD/AcrF family protein
2421	 53.81	0	2847496..2848623	-	375	192360021	acrE	CJA_2483	-	efflux transporter, RND family, MFP subunit
2422	 56.17	0	2848912..2849454	+	180	192360703	-	CJA_2484	-	hydrolase, NUDIX family
2423	 53.31	0	2849476..2851002	-	508	192361749	-	CJA_2485	-	tryptophan halogenase
2424	 54.18	0	2851002..2852843	-	613	192359116	-	CJA_2486	-	hypothetical protein
2425	 58.87	+1	2853070..2854929	+	619	192360460	-	CJA_2487	-	nodulation protein
2426	 56.37	0	2854933..2855340	+	135	192359302	-	CJA_2488	-	hypothetical protein
2427	 50.98	0	2855340..2855492	+	50	192362176	-	CJA_2489	-	hypothetical protein
2428	 58.58	+1	2855595..2856731	+	378	192361469	trmU	CJA_2490	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
2429	 58.65	+1	2856771..2857394	+	207	192358943	-	CJA_2491	-	hypothetical protein
2430	 55.17	0	2857561..2858952	+	463	192361674	purB	CJA_2492	-	adenylosuccinate lyase
2431	 54.66	0	2858987..2860177	+	396	192361020	-	CJA_2493	-	hypothetical protein
2432	 49.89	0	2860483..2860935	+	150	192360439	-	CJA_2494	-	acetyltransferase, GNAT family
2433	 50.30	0	2860949..2861449	+	166	192359594	-	CJA_2495	-	hypothetical protein
2434	 53.49	0	2861483..2861740	-	85	192361889	-	CJA_2496	-	hypothetical protein
2435	 39.80	-2	2862001..2862711	-	236	192361154	-	CJA_2497	-	hypothetical protein
2436	 48.38	0	2864096..2864773	+	225	192361171	-	CJA_2499	-	putative protein encoding reversible inactivation of extracellular polysaccharide production
2437	 52.21	0	2864733..2867180	-	815	192362265	-	CJA_2498	-	hypothetical protein
2438	 43.42	-1	2867250..2867606	-	118	192361057	-	CJA_2500	-	hypothetical protein
2439	 37.53	-2	2867612..2868397	-	261	192360096	-	CJA_2501	-	hypothetical protein
2440	 49.64	0	2868406..2874888	-	2160	192359584	-	CJA_2502	-	hypothetical protein
2441	 33.33	-2	2876411..2876551	+	46	192361744	-	CJA_2503	-	hypothetical protein
2442	 41.24	-2	2877455..2878516	-	353	192361199	-	CJA_2504	-	hypothetical protein
2443	 48.55	0	2878537..2880573	-	678	192360571	-	CJA_2505	-	hypothetical protein
2444	 41.92	-1	2880815..2881909	-	364	192361553	-	CJA_2506	-	hypothetical protein
2445	 46.32	-1	2881927..2883936	-	669	192361405	-	CJA_2507	-	hypothetical protein
2446	 40.93	-2	2884063..2885115	-	350	192362029	-	CJA_2508	-	hypothetical protein
2447	 47.01	0	2885136..2890106	-	1656	192360970	-	CJA_2509	-	hypothetical protein
2448	 54.65	0	2890139..2890396	-	85	192359826	-	CJA_2510	-	hypothetical protein
2449	 42.53	-1	2890573..2891562	+	329	192361824	-	CJA_2512	-	Integrase core domain protein
2450	 41.94	-1	2891504..2891596	-	30	192359526	-	CJA_2511	-	hypothetical protein
2451	 48.89	0	2891767..2892126	-	119	192361194	-	CJA_2513	-	hypothetical protein
2452	 41.61	-1	2892262..2893191	-	309	192360632	-	CJA_2514	-	hypothetical protein
2453	 45.40	-1	2893342..2894352	-	336	192362225	-	CJA_2515	-	hypothetical protein
2454	 48.35	0	2894349..2898176	-	1275	192359323	-	CJA_2516	-	hypothetical protein
2455	 47.55	0	2898245..2904049	-	1934	192359477	-	CJA_2517	-	Thrombospondin type 3 repeat family
2456	 49.47	0	2904186..2905040	-	284	192360509	-	CJA_2518	-	putative peptidyl-prolyl cis-trans isomerase D
2457	 45.26	-1	2905041..2905853	-	270	192361586	-	CJA_2519	-	peptidyl-prolyl cis-trans isomerase D
2458	 50.23	0	2905923..2944154	-	12743	192361760	-	CJA_2520	-	IPT/TIG domain protein
2459	 43.92	-1	2944879..2946210	-	443	192359897	fadL	CJA_2521	-	Putative fatty acid transport system, membrane protein
2460	 47.93	0	2946865..2947227	-	120	192360910	-	CJA_2523	-	transcription regulator protein
2461	 49.19	0	2947208..2947516	-	102	192361986	ihfA	CJA_2524	-	integration host factor, alpha subunit
2462	 55.10	0	2947529..2949922	-	797	192362137	pheT	CJA_2525	-	phenylalanyl-tRNA synthetase, beta subunit
2463	 53.75	0	2950036..2951049	-	337	192362508	pheS	CJA_2526	-	phenylalanyl-tRNA synthetase, alpha subunit
2464	 51.94	0	2951262..2951621	-	119	192360391	rplT	CJA_2527	-	ribosomal protein L20
2465	 52.53	0	2951657..2951854	-	65	192361237	rpmI	CJA_2528	-	ribosomal protein L35
2466	 52.31	0	2951915..2952346	-	143	192359216	infC	CJA_2529	-	initiation factor 3
2467	 56.71	0	2952508..2954436	-	642	192360042	thrS	CJA_2530	-	threonyl-tRNA synthetase
2468	 55.11	0	2954638..2957277	-	879	192361055	-	CJA_2531	-	putative sulfite reductase, flavoprotein component
2469	 58.30	+1	2957362..2958759	-	465	192361636	-	CJA_2532	-	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
2470	 55.66	0	2958764..2960698	-	644	192359578	-	CJA_2533	-	macrolide ABC efflux protein
2471	 56.99	0	2960698..2962164	-	488	192360644	-	CJA_2534	-	efflux transporter, RND family, MFP subunit
2472	 52.94	0	2962202..2963767	-	521	192361557	cysJ	CJA_2535	-	sulfite reductase (NADPH) flavoprotein alpha-component
2473	 51.40	0	2963897..2964715	-	272	192362283	-	CJA_2536	-	hypothetical protein
2474	 55.31	0	2964747..2965283	-	178	192361225	-	CJA_2537	-	hypothetical protein
2475	 49.83	0	2965293..2965892	-	199	192359246	-	CJA_2538	-	plasmolipin
2476	 48.70	0	2965983..2968370	-	795	192360590	cirA2	CJA_2539	-	exogenous ferric siderophore TonB-dependent receptor
2477	 51.41	0	2968698..2969510	+	270	192362301	-	CJA_2540	-	hypothetical protein
2478	 50.84	0	2969551..2970144	-	197	192359576	-	CJA_2541	-	yhgI protein
2479	 53.74	0	2970439..2974182	+	1247	192361071	metH	CJA_2542	-	methionine synthase
2480	 53.41	0	2974267..2974809	+	180	192361193	-	CJA_2543	-	hypothetical protein
2481	 55.61	0	2974849..2975481	+	210	192358874	-	CJA_2544	-	hypothetical protein
2482	 55.56	0	2975662..2976012	+	116	192359920	-	CJA_2545	-	hypothetical protein
2483	 57.24	0	2976014..2977318	+	434	192361774	-	CJA_2546	-	hypothetical protein
2484	 51.22	0	2977345..2978535	+	396	192360156	-	CJA_2547	-	putative CvpA family protein
2485	 55.43	0	2978555..2979577	-	340	192359100	-	CJA_2548	-	hypothetical protein
2486	 52.06	0	2979729..2980262	+	177	192360909	-	CJA_2549	-	shikimate kinase
2487	 47.63	0	2980947..2982044	+	365	192361260	-	CJA_2550	-	Alx protein
2488	 54.95	0	2982082..2983524	-	480	192360199	-	CJA_2551	-	siroheme synthase
2489	 50.27	0	2983538..2984824	-	428	192359600	serS	CJA_2552	-	seryl-tRNA synthetase
2490	 48.27	0	2984858..2985232	-	124	192361581	crcB	CJA_2553	-	crcB protein
2491	 53.72	0	2985251..2986594	-	447	192360498	-	CJA_2554	-	ATPase, AAA family domain protein
2492	 50.00	0	2986601..2987224	-	207	192358939	lolA	CJA_2555	-	outer membrane lipoprotein carrier protein LolA
2493	 55.70	0	2987297..2989648	-	783	192360826	ftsK	CJA_2556	-	DNA translocase ftsK
2494	 51.11	0	2989728..2989952	-	74	192362045	-	CJA_2557	-	hypothetical protein
2495	 49.24	0	2989977..2992271	+	764	192359087	-	CJA_2558	-	signal-transducing histidine kinase
2496	 47.49	0	2992274..2992732	+	152	192359418	-	CJA_2559	-	two-component response regulator
2497	 51.08	0	2992758..2994521	+	587	192361381	-	CJA_2560	-	response regulator
2498	 50.21	0	2994674..2995621	+	315	192362213	trxB	CJA_2561	-	thioredoxin-disulfide reductase
2499	 44.47	-1	2995675..2997174	-	499	192359649	-	CJA_2562	-	SpoVR like family protein
2500	 46.98	0	2997171..2998445	-	424	192359745	-	CJA_2563	-	hypothetical protein
2501	 44.36	-1	2998512..3000434	-	640	192361724	-	CJA_2564	-	protein kinase
2502	 51.13	0	3000806..3001513	+	235	192361182	aat	CJA_2565	-	leucyl/phenylalanyl-tRNA--protein transferase
2503	 52.82	0	3001538..3002245	+	235	192360735	-	CJA_2566	-	arginine-tRNA-protein transferase-related protein
2504	 46.58	-1	3002383..3002601	+	72	192360176	infA	CJA_2567	-	translation initiation factor IF-1
2505	 48.78	0	3002670..3004967	-	765	192361782	clpA	CJA_2568	-	ATP-binding protease component ClpA
2506	 44.44	-1	3005016..3005393	-	125	192360778	-	CJA_2569	-	ATP-dependent Clp protease adaptor protein clpS
2507	 48.68	0	3005538..3005915	+	125	192360604	cspD	CJA_2570	-	cold-shock protein CspD
2508	 54.18	0	3006180..3008405	-	741	192359542	-	CJA_2571	-	isocitrate dehydrogenase, NADP-dependent
2509	 58.56	+1	3008601..3009377	+	258	192361547	-	CJA_2572	-	pseudouridylate synthase
2510	 52.74	0	3009424..3010680	-	418	192360448	-	CJA_2573	-	HD domain protein
2511	 55.64	0	3010813..3011610	-	265	192359862	-	CJA_2574	-	MazG family protein
2512	 55.81	0	3011620..3013866	-	748	192360692	-	CJA_2575	-	GTP pyrophosphokinase
2513	 58.64	+1	3013959..3015416	-	485	192362323	rumA	CJA_2576	-	23S rRNA (uracil-5-)-methyltransferase RumA
2514	 55.89	0	3015455..3016345	-	296	192359120	cysM	CJA_2577	-	cysteine synthase B
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.