IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2375	 48.15	0	2783759..2784055	-	98	192362227	-	CJA_2437	-	hypothetical protein
2376	 54.44	0	2784094..2785230	-	378	192361069	rnd	CJA_2438	-	ribonuclease D
2377	 59.76	+1	2785257..2785850	-	197	192359825	recR	CJA_2439	-	recombination protein RecR
2378	 51.26	0	2785871..2786188	-	105	192358910	-	CJA_2440	-	conserved hypothetical protein TIGR00103
2379	 59.52	+1	2786224..2788266	-	680	192362329	dnaX	CJA_2441	-	DNA polymerase III, gamma and tau subunits
2380	 54.44	0	2788530..2788709	-	59	192360522	-	CJA_2442	-	hypothetical protein
2381	 57.63	+1	2788784..2789281	+	165	192359288	-	CJA_2443	-	thiol peroxidase
2382	 51.99	0	2789506..2790984	+	492	192362241	-	CJA_2444	-	histidine kinase sensor protein
2383	 51.30	0	2790994..2791416	+	140	192361864	-	CJA_2445	-	two-component response regulator
2384	 51.91	0	2791417..2793930	+	837	192361550	-	CJA_2447	-	MorA
2385	 53.64	0	2793920..2794840	-	306	192360549	metR-1	CJA_2446	-	transcriptional activator MetR
2386	 58.11	+1	2795048..2797477	+	809	192359663	metE	CJA_2448	-	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase
2387	 54.72	0	2798709..2799386	+	225	192362382	-	CJA_2449	-	hypothetical protein
2388	 53.33	0	2800559..2800663	-	34	192360003	-	CJA_2450	-	hypothetical protein
2389	 41.16	-2	2802455..2802748	-	97	192359050	cas2	CJA_2451	-	CRISPR-associated protein Cas2
2390	 44.15	-1	2802757..2803773	-	338	192359205	cas1	CJA_2452	-	CRISPR-associated protein Cas1
2391	 44.71	-1	2803770..2804402	-	210	192359223	cas4	CJA_2453	-	CRISPR-associated protein Cas4
2392	 41.25	-2	2804389..2805222	-	277	192361649	csd2	CJA_2454	-	CRISPR-associated protein, Csd2 family
2393	 43.20	-1	2805219..2807246	-	675	192360877	csd1	CJA_2455	-	CRISPR-associated protein, Csd1 family
2394	 44.40	-1	2807243..2807947	-	234	192360520	-	CJA_2456	-	CRISPR-associated protein Cas5, Dvulg subtype
2395	 41.69	-1	2807956..2810409	-	817	192360930	cas3	CJA_2457	-	CRISPR-associated helicase Cas3 domain protein
2396	 52.93	0	2810616..2811452	-	278	192359976	-	CJA_2458	-	hypothetical protein
2397	 51.95	0	2811550..2812011	-	153	192359967	-	CJA_2459	-	putative TonB-dependent receptor
2398	 53.61	0	2811983..2814379	-	798	192360831	-	CJA_2460	-	EAL domain protein
2399	 54.60	0	2814442..2817192	-	916	192361677	-	CJA_2461	-	probable sensor/response hybrid
2400	 52.38	0	2817185..2817772	-	195	192359700	-	CJA_2462	-	hypothetical protein
2401	 53.76	0	2818005..2818856	+	283	192359681	-	CJA_2463	-	hypothetical protein
2402	 52.25	0	2818982..2819092	-	36	192360324	-	CJA_2464	-	hypothetical protein
2403	 52.29	0	2819155..2819634	+	159	192361184	-	CJA_2465	-	DNA-binding protein HU family
2404	 52.96	0	2819709..2820131	-	140	192362240	-	CJA_2466	-	histidine triad family protein
2405	 55.17	0	2820157..2821992	+	611	192359534	proS	CJA_2467	-	prolyl-tRNA synthetase
2406	 49.29	0	2822055..2822405	+	116	192362097	-	CJA_2468	-	hypothetical protein
2407	 53.53	0	2822476..2824881	-	801	192362338	cbp2F	CJA_2469	-	carbohydrate binding protein, putative, cbp2F
2408	 41.48	-1	2824963..2825097	-	44	192360204	-	CJA_2470	-	hypothetical protein
2409	 52.34	0	2825087..2826922	-	611	192361596	xyn10A	CJA_2471	-	endo-1,4-beta-xylanase, xyn10A
2410	 52.27	0	2827080..2829968	-	962	192361914	cel9A	CJA_2472	-	endo-1,4-beta glucanase, cel9A
2411	 52.22	0	2830228..2832324	-	698	192362135	cel6A	CJA_2473	-	cellobiohydrolase, putative, cel6A
2412	 45.37	-1	2832364..2832579	+	71	192359824	-	CJA_2474	-	hypothetical protein
2413	 50.00	0	2832853..2834610	-	585	192361098	man5B	CJA_2475	-	endo-1, 4-beta mannanase, man5B
2414	 48.72	0	2835013..2835129	+	38	192361291	-	CJA_2476	-	hypothetical protein
2415	 56.22	0	2835809..2838862	+	1017	192360902	gly74A	CJA_2477	-	endo-1,4-beta-glucanase/xyloglucanase, putative, gly74A
2416	 52.72	0	2838941..2840539	-	532	192359674	lysS	CJA_2478	-	lysyl-tRNA synthetase
2417	 55.25	0	2840490..2841479	-	329	192358804	prfB	CJA_2479	-	peptide chain release factor 2
2418	 56.47	0	2841845..2843305	+	486	192361333	man26B	CJA_2480	-	endo-1, 4-beta mannanase, man26B
2419	 57.86	+1	2843373..2844212	-	279	192362364	-	CJA_2481	-	CobQ/CobB/MinD/ParA nucleotide binding domain protein
2420	 55.92	0	2844335..2847424	-	1029	192359028	-	CJA_2482	-	AcrB/AcrD/AcrF family protein
2421	 53.81	0	2847496..2848623	-	375	192360021	acrE	CJA_2483	-	efflux transporter, RND family, MFP subunit
2422	 56.17	0	2848912..2849454	+	180	192360703	-	CJA_2484	-	hydrolase, NUDIX family
2423	 53.31	0	2849476..2851002	-	508	192361749	-	CJA_2485	-	tryptophan halogenase
2424	 54.18	0	2851002..2852843	-	613	192359116	-	CJA_2486	-	hypothetical protein
2425	 58.87	+1	2853070..2854929	+	619	192360460	-	CJA_2487	-	nodulation protein
2426	 56.37	0	2854933..2855340	+	135	192359302	-	CJA_2488	-	hypothetical protein
2427	 50.98	0	2855340..2855492	+	50	192362176	-	CJA_2489	-	hypothetical protein
2428	 58.58	+1	2855595..2856731	+	378	192361469	trmU	CJA_2490	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
2429	 58.65	+1	2856771..2857394	+	207	192358943	-	CJA_2491	-	hypothetical protein
2430	 55.17	0	2857561..2858952	+	463	192361674	purB	CJA_2492	-	adenylosuccinate lyase
2431	 54.66	0	2858987..2860177	+	396	192361020	-	CJA_2493	-	hypothetical protein
2432	 49.89	0	2860483..2860935	+	150	192360439	-	CJA_2494	-	acetyltransferase, GNAT family
2433	 50.30	0	2860949..2861449	+	166	192359594	-	CJA_2495	-	hypothetical protein
2434	 53.49	0	2861483..2861740	-	85	192361889	-	CJA_2496	-	hypothetical protein
2435	 39.80	-2	2862001..2862711	-	236	192361154	-	CJA_2497	-	hypothetical protein
2436	 48.38	0	2864096..2864773	+	225	192361171	-	CJA_2499	-	putative protein encoding reversible inactivation of extracellular polysaccharide production
2437	 52.21	0	2864733..2867180	-	815	192362265	-	CJA_2498	-	hypothetical protein
2438	 43.42	-1	2867250..2867606	-	118	192361057	-	CJA_2500	-	hypothetical protein
2439	 37.53	-2	2867612..2868397	-	261	192360096	-	CJA_2501	-	hypothetical protein
2440	 49.64	0	2868406..2874888	-	2160	192359584	-	CJA_2502	-	hypothetical protein
2441	 33.33	-2	2876411..2876551	+	46	192361744	-	CJA_2503	-	hypothetical protein
2442	 41.24	-2	2877455..2878516	-	353	192361199	-	CJA_2504	-	hypothetical protein
2443	 48.55	0	2878537..2880573	-	678	192360571	-	CJA_2505	-	hypothetical protein
2444	 41.92	-1	2880815..2881909	-	364	192361553	-	CJA_2506	-	hypothetical protein
2445	 46.32	-1	2881927..2883936	-	669	192361405	-	CJA_2507	-	hypothetical protein
2446	 40.93	-2	2884063..2885115	-	350	192362029	-	CJA_2508	-	hypothetical protein
2447	 47.01	0	2885136..2890106	-	1656	192360970	-	CJA_2509	-	hypothetical protein
2448	 54.65	0	2890139..2890396	-	85	192359826	-	CJA_2510	-	hypothetical protein
2449	 42.53	-1	2890573..2891562	+	329	192361824	-	CJA_2512	-	Integrase core domain protein
2450	 41.94	-1	2891504..2891596	-	30	192359526	-	CJA_2511	-	hypothetical protein
2451	 48.89	0	2891767..2892126	-	119	192361194	-	CJA_2513	-	hypothetical protein
2452	 41.61	-1	2892262..2893191	-	309	192360632	-	CJA_2514	-	hypothetical protein
2453	 45.40	-1	2893342..2894352	-	336	192362225	-	CJA_2515	-	hypothetical protein
2454	 48.35	0	2894349..2898176	-	1275	192359323	-	CJA_2516	-	hypothetical protein
2455	 47.55	0	2898245..2904049	-	1934	192359477	-	CJA_2517	-	Thrombospondin type 3 repeat family
2456	 49.47	0	2904186..2905040	-	284	192360509	-	CJA_2518	-	putative peptidyl-prolyl cis-trans isomerase D
2457	 45.26	-1	2905041..2905853	-	270	192361586	-	CJA_2519	-	peptidyl-prolyl cis-trans isomerase D
2458	 50.23	0	2905923..2944154	-	12743	192361760	-	CJA_2520	-	IPT/TIG domain protein
2459	 43.92	-1	2944879..2946210	-	443	192359897	fadL	CJA_2521	-	Putative fatty acid transport system, membrane protein
2460	 47.93	0	2946865..2947227	-	120	192360910	-	CJA_2523	-	transcription regulator protein
2461	 49.19	0	2947208..2947516	-	102	192361986	ihfA	CJA_2524	-	integration host factor, alpha subunit
2462	 55.10	0	2947529..2949922	-	797	192362137	pheT	CJA_2525	-	phenylalanyl-tRNA synthetase, beta subunit
2463	 53.75	0	2950036..2951049	-	337	192362508	pheS	CJA_2526	-	phenylalanyl-tRNA synthetase, alpha subunit
2464	 51.94	0	2951262..2951621	-	119	192360391	rplT	CJA_2527	-	ribosomal protein L20
2465	 52.53	0	2951657..2951854	-	65	192361237	rpmI	CJA_2528	-	ribosomal protein L35
2466	 52.31	0	2951915..2952346	-	143	192359216	infC	CJA_2529	-	initiation factor 3
2467	 56.71	0	2952508..2954436	-	642	192360042	thrS	CJA_2530	-	threonyl-tRNA synthetase
2468	 55.11	0	2954638..2957277	-	879	192361055	-	CJA_2531	-	putative sulfite reductase, flavoprotein component
2469	 58.30	+1	2957362..2958759	-	465	192361636	-	CJA_2532	-	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
2470	 55.66	0	2958764..2960698	-	644	192359578	-	CJA_2533	-	macrolide ABC efflux protein
2471	 56.99	0	2960698..2962164	-	488	192360644	-	CJA_2534	-	efflux transporter, RND family, MFP subunit
2472	 52.94	0	2962202..2963767	-	521	192361557	cysJ	CJA_2535	-	sulfite reductase (NADPH) flavoprotein alpha-component
2473	 51.40	0	2963897..2964715	-	272	192362283	-	CJA_2536	-	hypothetical protein
2474	 55.31	0	2964747..2965283	-	178	192361225	-	CJA_2537	-	hypothetical protein
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.