IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2329	 52.89	0	2734233..2734595	-	120	192360020	-	CJA_2391	-	hypothetical protein
2330	 46.67	-1	2734644..2734808	+	54	192362488	-	CJA_2393	-	hypothetical protein
2331	 49.55	0	2734799..2736019	-	406	192360701	mshG	CJA_2392	-	MSHA biogenesis protein MshG
2332	 52.45	0	2736036..2737751	-	571	192359484	mshE	CJA_2394	-	MSHA biogenesis protein MshE
2333	 55.37	0	2737769..2739211	-	480	192360406	-	CJA_2395	-	putative MSHA biogenesis protein MshN
2334	 52.77	0	2739226..2740146	-	306	192361214	mshM	CJA_2396	-	MSHA biogenesis protein MshM
2335	 50.89	0	2740194..2741930	-	578	192358819	mshL	CJA_2397	-	MSHA biogenesis protein MshL
2336	 48.67	0	2741955..2742293	-	112	192359643	-	CJA_2398	-	MSHA biogenesis protein MshK
2337	 49.78	0	2742286..2742966	-	226	192360432	-	CJA_2399	-	putative MSHA biogenesis protein MshJ
2338	 51.79	0	2742963..2743634	-	223	192361281	-	CJA_2400	-	MSHA biogenesis protein MshI
2339	 55.36	0	2743636..2744661	-	341	192362092	-	CJA_2401	-	putative MSHA biogenesis protein MshI
2340	 52.26	0	2744740..2745204	+	154	192362257	-	CJA_2402	-	RNA methyltransferase, TrmH family, group 2
2341	 57.12	0	2745171..2745704	+	177	192361452	-	CJA_2403	-	flavodoxin
2342	 51.81	0	2745770..2746294	+	174	192360690	-	CJA_2404	-	flavodoxin
2343	 60.39	+1	2746291..2748393	+	700	192361512	-	CJA_2405	-	D-amino acid oxidase family protein
2344	 55.00	0	2748453..2748932	+	159	192358917	-	CJA_2407	-	hypothetical protein
2345	 52.61	0	2748929..2749540	-	203	192360598	-	CJA_2406	-	hypothetical protein
2346	 53.81	0	2749574..2750374	+	266	192359238	-	CJA_2408	-	glutaminyl-peptide cyclotransferase
2347	 61.50	+1	2750400..2751212	-	270	192362234	-	CJA_2409	-	oxidoreductase, short chain dehydrogenase/reductase family
2348	 60.15	+1	2751252..2752034	-	260	192360700	-	CJA_2410	-	enoyl-CoA hydratase/isomerase family protein
2349	 56.09	0	2752247..2753986	+	579	192359863	-	CJA_2411	-	arginyl-tRNA synthetase
2350	 50.11	0	2754203..2755102	+	299	192360529	-	CJA_2412	-	hypothetical protein
2351	 47.63	0	2755171..2756205	-	344	192359676	pel3B	CJA_2413	-	pectate lyase, putative, pel3B
2352	 53.57	0	2756717..2758861	+	714	192362023	-	CJA_2414	-	BNR/Asp-box repeat domain protein
2353	 53.28	0	2758885..2760468	+	527	192361296	pae12A	CJA_2415	-	pectin acetylesterase, putative, pae12A
2354	 50.30	0	2760469..2760798	-	109	192359991	-	CJA_2416	-	hypothetical protein
2355	 55.77	0	2760870..2763008	-	712	192359490	-	CJA_2417	-	ATP-dependent helicase, DinG family
2356	 54.93	0	2762998..2764326	-	442	192358932	-	CJA_2418	-	Acyltransferase domain protein
2357	 55.15	0	2764341..2765885	+	514	192359770	-	CJA_2420	-	Response regulator
2358	 56.34	0	2765882..2766898	-	338	192361045	pyrB	CJA_2419	-	aspartate carbamoyltransferase
2359	 57.18	0	2767015..2768184	-	389	192361924	eryB	CJA_2421	-	NAD binding site:D-amino acid oxidase
2360	 58.54	+1	2768305..2769633	-	442	192359919	-	CJA_2422	-	tRNA and rRNA cytosine-C5-methylase
2361	 50.22	0	2769654..2770334	-	226	192362485	-	CJA_2423	-	hypothetical protein
2362	 55.34	0	2770614..2771717	+	367	192361985	gfo	CJA_2424	-	glucose-fructose oxidoreductase
2363	 53.06	0	2771756..2773783	-	675	192360924	uvrB	CJA_2425	-	excinuclease ABC, B subunit
2364	 48.09	0	2774328..2775032	+	234	192361408	-	CJA_2427	-	PEP-CTERM putative exosortase interaction domain protein
2365	 54.88	0	2775010..2776002	-	330	192359272	-	CJA_2426	-	transcriptional regulator, LysR family
2366	 50.17	0	2776067..2776666	+	199	192361706	-	CJA_2428	-	Flavodoxin-like fold subfamily
2367	 55.67	0	2776703..2777557	+	284	192358820	-	CJA_2429	-	pirin
2368	 53.33	0	2777643..2778182	+	179	192359596	-	CJA_2430	-	NAD(P)H:quinone oxidoreductase
2369	 47.22	0	2778295..2779446	-	383	192360429	-	CJA_2431	-	ISCja2, transposase
2370	 52.14	0	2779601..2780068	-	155	192360927	-	CJA_2432	-	Dps family protein
2371	 53.80	0	2780200..2780673	-	157	192361993	-	CJA_2433	-	acetyltransferase, GNAT family
2372	 50.48	0	2780673..2782655	-	660	192359695	-	CJA_2434	-	von Willebrand factor type A domain protein
2373	 54.40	0	2782793..2783281	-	162	192360312	-	CJA_2435	-	hypothetical protein
2374	 53.15	0	2783302..2783745	-	147	192361455	-	CJA_2436	-	hypothetical protein
2375	 48.15	0	2783759..2784055	-	98	192362227	-	CJA_2437	-	hypothetical protein
2376	 54.44	0	2784094..2785230	-	378	192361069	rnd	CJA_2438	-	ribonuclease D
2377	 59.76	+1	2785257..2785850	-	197	192359825	recR	CJA_2439	-	recombination protein RecR
2378	 51.26	0	2785871..2786188	-	105	192358910	-	CJA_2440	-	conserved hypothetical protein TIGR00103
2379	 59.52	+1	2786224..2788266	-	680	192362329	dnaX	CJA_2441	-	DNA polymerase III, gamma and tau subunits
2380	 54.44	0	2788530..2788709	-	59	192360522	-	CJA_2442	-	hypothetical protein
2381	 57.63	+1	2788784..2789281	+	165	192359288	-	CJA_2443	-	thiol peroxidase
2382	 51.99	0	2789506..2790984	+	492	192362241	-	CJA_2444	-	histidine kinase sensor protein
2383	 51.30	0	2790994..2791416	+	140	192361864	-	CJA_2445	-	two-component response regulator
2384	 51.91	0	2791417..2793930	+	837	192361550	-	CJA_2447	-	MorA
2385	 53.64	0	2793920..2794840	-	306	192360549	metR-1	CJA_2446	-	transcriptional activator MetR
2386	 58.11	+1	2795048..2797477	+	809	192359663	metE	CJA_2448	-	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase
2387	 54.72	0	2798709..2799386	+	225	192362382	-	CJA_2449	-	hypothetical protein
2388	 53.33	0	2800559..2800663	-	34	192360003	-	CJA_2450	-	hypothetical protein
2389	 41.16	-2	2802455..2802748	-	97	192359050	cas2	CJA_2451	-	CRISPR-associated protein Cas2
2390	 44.15	-1	2802757..2803773	-	338	192359205	cas1	CJA_2452	-	CRISPR-associated protein Cas1
2391	 44.71	-1	2803770..2804402	-	210	192359223	cas4	CJA_2453	-	CRISPR-associated protein Cas4
2392	 41.25	-2	2804389..2805222	-	277	192361649	csd2	CJA_2454	-	CRISPR-associated protein, Csd2 family
2393	 43.20	-1	2805219..2807246	-	675	192360877	csd1	CJA_2455	-	CRISPR-associated protein, Csd1 family
2394	 44.40	-1	2807243..2807947	-	234	192360520	-	CJA_2456	-	CRISPR-associated protein Cas5, Dvulg subtype
2395	 41.69	-1	2807956..2810409	-	817	192360930	cas3	CJA_2457	-	CRISPR-associated helicase Cas3 domain protein
2396	 52.93	0	2810616..2811452	-	278	192359976	-	CJA_2458	-	hypothetical protein
2397	 51.95	0	2811550..2812011	-	153	192359967	-	CJA_2459	-	putative TonB-dependent receptor
2398	 53.61	0	2811983..2814379	-	798	192360831	-	CJA_2460	-	EAL domain protein
2399	 54.60	0	2814442..2817192	-	916	192361677	-	CJA_2461	-	probable sensor/response hybrid
2400	 52.38	0	2817185..2817772	-	195	192359700	-	CJA_2462	-	hypothetical protein
2401	 53.76	0	2818005..2818856	+	283	192359681	-	CJA_2463	-	hypothetical protein
2402	 52.25	0	2818982..2819092	-	36	192360324	-	CJA_2464	-	hypothetical protein
2403	 52.29	0	2819155..2819634	+	159	192361184	-	CJA_2465	-	DNA-binding protein HU family
2404	 52.96	0	2819709..2820131	-	140	192362240	-	CJA_2466	-	histidine triad family protein
2405	 55.17	0	2820157..2821992	+	611	192359534	proS	CJA_2467	-	prolyl-tRNA synthetase
2406	 49.29	0	2822055..2822405	+	116	192362097	-	CJA_2468	-	hypothetical protein
2407	 53.53	0	2822476..2824881	-	801	192362338	cbp2F	CJA_2469	-	carbohydrate binding protein, putative, cbp2F
2408	 41.48	-1	2824963..2825097	-	44	192360204	-	CJA_2470	-	hypothetical protein
2409	 52.34	0	2825087..2826922	-	611	192361596	xyn10A	CJA_2471	-	endo-1,4-beta-xylanase, xyn10A
2410	 52.27	0	2827080..2829968	-	962	192361914	cel9A	CJA_2472	-	endo-1,4-beta glucanase, cel9A
2411	 52.22	0	2830228..2832324	-	698	192362135	cel6A	CJA_2473	-	cellobiohydrolase, putative, cel6A
2412	 45.37	-1	2832364..2832579	+	71	192359824	-	CJA_2474	-	hypothetical protein
2413	 50.00	0	2832853..2834610	-	585	192361098	man5B	CJA_2475	-	endo-1, 4-beta mannanase, man5B
2414	 48.72	0	2835013..2835129	+	38	192361291	-	CJA_2476	-	hypothetical protein
2415	 56.22	0	2835809..2838862	+	1017	192360902	gly74A	CJA_2477	-	endo-1,4-beta-glucanase/xyloglucanase, putative, gly74A
2416	 52.72	0	2838941..2840539	-	532	192359674	lysS	CJA_2478	-	lysyl-tRNA synthetase
2417	 55.25	0	2840490..2841479	-	329	192358804	prfB	CJA_2479	-	peptide chain release factor 2
2418	 56.47	0	2841845..2843305	+	486	192361333	man26B	CJA_2480	-	endo-1, 4-beta mannanase, man26B
2419	 57.86	+1	2843373..2844212	-	279	192362364	-	CJA_2481	-	CobQ/CobB/MinD/ParA nucleotide binding domain protein
2420	 55.92	0	2844335..2847424	-	1029	192359028	-	CJA_2482	-	AcrB/AcrD/AcrF family protein
2421	 53.81	0	2847496..2848623	-	375	192360021	acrE	CJA_2483	-	efflux transporter, RND family, MFP subunit
2422	 56.17	0	2848912..2849454	+	180	192360703	-	CJA_2484	-	hydrolase, NUDIX family
2423	 53.31	0	2849476..2851002	-	508	192361749	-	CJA_2485	-	tryptophan halogenase
2424	 54.18	0	2851002..2852843	-	613	192359116	-	CJA_2486	-	hypothetical protein
2425	 58.87	+1	2853070..2854929	+	619	192360460	-	CJA_2487	-	nodulation protein
2426	 56.37	0	2854933..2855340	+	135	192359302	-	CJA_2488	-	hypothetical protein
2427	 50.98	0	2855340..2855492	+	50	192362176	-	CJA_2489	-	hypothetical protein
2428	 58.58	+1	2855595..2856731	+	378	192361469	trmU	CJA_2490	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.