IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1987	 48.62	0	2365643..2366296	-	217	192362022	-	CJA_2045	-	hypothetical protein
1988	 53.29	0	2366346..2367227	-	293	192362038	-	CJA_2046	-	hydrolase, NUDIX family
1989	 50.09	0	2367257..2368963	-	568	192360329	-	CJA_2047	-	PA1822-like protein
1990	 53.36	0	2369200..2369913	-	237	192359256	dnaQ	CJA_2048	-	DNA polymerase III, epsilon subunit
1991	 55.40	0	2369988..2370422	-	144	192361631	rnhA	CJA_2049	-	RNase H
1992	 54.53	0	2370397..2371302	-	301	192360820	-	CJA_2050	-	Generic methyl-transferase
1993	 48.96	0	2371390..2371485	-	31	192359473	-	CJA_2051	-	hypothetical protein
1994	 54.25	0	2371608..2372243	+	211	192362517	-	CJA_2052	-	hydroxyacylglutathione hydrolase
1995	 51.99	0	2372453..2374012	+	519	192361254	lmt23B	CJA_2053	-	lytic murein transglycosylase, putative, lmt23B
1996	 51.67	0	2374082..2375695	-	537	192362004	-	CJA_2054	-	peptide ABC transporter, ATP-binding protein
1997	 48.19	0	2375700..2376581	-	293	192359661	oppC	CJA_2055	-	oligopeptide ABC transporter, permease protein
1998	 50.64	0	2376581..2377516	-	311	192360499	oppB	CJA_2056	-	oligopeptide transport system permease protein oppB
1999	 47.29	0	2377528..2378265	-	245	192361776	-	CJA_2057	-	oligopeptide ABC transporter periplasmic oligopeptide-binding protein
2000	 49.56	0	2378235..2379134	-	299	192358787	-	CJA_2058	-	oligopeptide ABC transporter periplasmic oligopeptide-binding protein
2001	 46.87	0	2379215..2381305	-	696	192360108	-	CJA_2059	-	Peptidase family M3
2002	 49.84	0	2381678..2382295	+	205	192360904	-	CJA_2060	-	hypothetical protein
2003	 47.47	0	2382309..2383277	+	322	192362269	-	CJA_2061	-	sensory box/GGDEF family protein
2004	 40.74	-2	2383367..2383501	-	44	192359682	-	CJA_2062	-	hypothetical protein
2005	 48.45	0	2383574..2384122	-	182	192360455	uvs015	CJA_2063	-	Uvs015
2006	 51.41	0	2384115..2386133	-	672	192360395	ccmF	CJA_2064	-	cytochrome c-type biogenesis protein CcmF
2007	 51.18	0	2386123..2386587	-	154	192361384	-	CJA_2065	-	CycJ
2008	 52.82	0	2386653..2386847	-	64	192362454	ccmD	CJA_2066	-	heme exporter protein CcmD
2009	 52.55	0	2386851..2387615	-	254	192359499	-	CJA_2067	-	heme exporter protein C
2010	 56.70	0	2387687..2388388	-	233	192358904	ccmB	CJA_2068	-	heme exporter protein CcmB
2011	 54.95	0	2388388..2389053	-	221	192359720	ccmA	CJA_2069	-	heme ABC exporter, ATP-binding protein CcmA
2012	 52.03	0	2389073..2391046	+	657	192361051	-	CJA_2070	-	hypothetical protein
2013	 50.17	0	2391059..2391361	+	100	192361951	-	CJA_2071	-	FlhB domain protein
2014	 50.49	0	2391383..2393917	-	844	192359360	-	CJA_2072	-	sensory box protein
2015	 56.22	0	2393975..2395084	-	369	192360215	ald	CJA_2073	-	alanine dehydrogenase
2016	 55.56	0	2395381..2395893	+	170	192360863	-	CJA_2074	-	hypothetical protein
2017	 53.14	0	2395916..2396824	-	302	192359196	-	CJA_2075	-	hypothetical protein
2018	 51.52	0	2396912..2397109	+	65	192360031	-	CJA_2076	-	hypothetical protein
2019	 55.05	0	2397233..2398024	+	263	192361412	-	CJA_2077	-	hypothetical protein
2020	 54.16	0	2398177..2399751	+	524	192362233	aer-2	CJA_2078	-	aerotaxis receptor Aer-2
2021	 52.75	0	2399827..2401155	+	442	192359441	bioA	CJA_2079	-	adenosylmethionine-8-amino-7-oxononanoate transaminase
2022	 52.58	0	2401219..2402226	-	335	192360220	trpS	CJA_2080	-	tryptophanyl-tRNA synthetase
2023	 52.23	0	2402317..2403348	-	343	192361025	-	CJA_2081	-	cyclic nucleotide-binding domain protein
2024	 53.44	0	2403544..2404881	-	445	192362291	-	CJA_2082	-	aminopeptidase, M18 family
2025	 54.77	0	2404938..2405702	-	254	192361622	-	CJA_2083	-	glycoprotease family protein
2026	 51.22	0	2405759..2406412	-	217	192359071	adk	CJA_2084	-	adenylate kinase
2027	 49.68	0	2406764..2407234	+	156	192362390	-	CJA_2085	-	transcriptional regulator, AsnC family
2028	 52.69	0	2407356..2408993	-	545	192360693	-	CJA_2086	-	methyl-accepting chemotaxis protein
2029	 52.56	0	2409059..2410525	-	488	192360334	gabD	CJA_2087	-	succinate-semialdehyde dehydrogenase
2030	 51.10	0	2410529..2412262	-	577	192361826	-	CJA_2088	-	Cell volume regulation protein A homolog
2031	 50.73	0	2412444..2414438	+	664	192359348	rnb	CJA_2089	-	exoribonuclease II
2032	 47.96	0	2414463..2414927	+	154	192359197	-	CJA_2090	-	Family of unknown function (DUF589) superfamily
2033	 33.33	-2	2414995..2415582	-	195	192361401	-	CJA_2091	-	hypothetical protein
2034	 44.74	-1	2415572..2416816	-	414	192362239	-	CJA_2092	-	hypothetical protein
2035	 47.69	0	2417351..2419405	-	684	192359162	-	CJA_2093	-	Rhs family protein
2036	 52.38	0	2419478..2419792	+	104	192361898	-	CJA_2094	-	IS66 family element, Orf1 protein
2037	 46.72	0	2419789..2420139	+	116	192361289	-	CJA_2095	-	IS66 family element, Orf2 protein
2038	 46.81	0	2420172..2421737	+	521	192362471	-	CJA_2097	-	IS66 family element, transposase
2039	 46.38	-1	2421591..2422640	-	349	192360639	-	CJA_2096	-	RHS Repeat family
2040	 46.40	-1	2422576..2424159	-	527	192361425	-	CJA_2098	-	IS66 family element, transposase
2041	 45.87	-1	2424198..2424548	-	116	192360774	-	CJA_2099	-	IS66 family element, Orf2 protein
2042	 51.11	0	2424545..2424859	-	104	192360171	-	CJA_2100	-	IS66 family element, Orf1 protein
2043	 42.66	-1	2424928..2428335	-	1135	192360373	-	CJA_2101	-	putative cytoplasmic membrane protein
2044	 51.06	0	2428997..2430604	-	535	192360005	-	CJA_2102	-	Predicted deacylase
2045	 51.39	0	2430677..2432254	-	525	192360356	guaA	CJA_2103	-	GMP synthase, C- domain protein
2046	 55.76	0	2432346..2433821	-	491	192359304	guaB	CJA_2104	-	inosine-5'-monophosphate dehydrogenase
2047	 57.99	+1	2434027..2435409	+	460	192362513	xseA	CJA_2105	-	exodeoxyribonuclease VII, large subunit
2048	 56.42	0	2435537..2436727	+	396	192361388	thiO	CJA_2106	-	glycine oxidase ThiO
2049	 54.41	0	2436740..2436943	+	67	192361399	thiS	CJA_2107	-	thiamine biosynthesis protein ThiS
2050	 55.60	0	2436945..2437739	+	264	192358948	thiG	CJA_2108	-	Thiazole biosynthesis protein ThiG
2051	 54.68	0	2437774..2438499	-	241	192361675	-	CJA_2109	-	hypothetical protein
2052	 55.71	0	2438530..2439159	-	209	192361099	-	CJA_2110	-	putative HD-GYP hydrolase domain containing protein
2053	 49.39	0	2439199..2440095	-	298	192361104	-	CJA_2111	-	Auxin Efflux Carrier superfamily
2054	 54.41	0	2440279..2441592	-	437	192360539	-	CJA_2112	-	ammonium transporter
2055	 46.17	-1	2442041..2442406	-	121	192362010	himD	CJA_2113	-	himD/ihfB
2056	 51.40	0	2442490..2444166	-	558	192362187	rpsA	CJA_2114	-	ribosomal protein S1
2057	 51.03	0	2444398..2445810	-	470	192359918	-	CJA_2115	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
2058	 50.79	0	2445849..2446736	-	295	192361003	galU	CJA_2116	-	UTP-glucose-1-phosphate uridylyltransferase
2059	 47.41	0	2446797..2448146	-	449	192359970	-	CJA_2117	-	putative phosphomannomutase
2060	 52.40	0	2448349..2449014	-	221	192360808	cmk	CJA_2118	-	cytidylate kinase
2061	 52.97	0	2449059..2449781	-	240	192361238	-	CJA_2119	-	Orotidine 5'-phosphate decarboxylase
2062	 43.69	-1	2449863..2450171	-	102	192359221	comEA	CJA_2120	-	integral membrane protein
2063	 49.12	0	2450377..2451795	-	472	192358897	cysNC	CJA_2121	-	sulfate adenylyltransferase, subunit 1/adenylylsulfate kinase
2064	 48.18	0	2451841..2452749	-	302	192359440	cysD	CJA_2122	-	sulfate adenylyltransferase subunit 2
2065	 51.91	0	2452856..2453770	-	304	192361620	-	CJA_2123	-	Prephenate dehydrogenase
2066	 51.53	0	2453770..2454879	-	369	192360645	pheA	CJA_2124	-	chorismate mutase/prephenate dehydratase
2067	 54.56	0	2454920..2457571	-	883	192360085	gyrA	CJA_2125	-	DNA gyrase, A subunit
2068	 42.11	-1	2457687..2457800	-	37	192359055	-	CJA_2126	-	hypothetical protein
2069	 58.01	+1	2457842..2459227	+	461	192359201	-	CJA_2127	-	hydrolase, Atz/Trz family
2070	 54.22	0	2459260..2459982	+	240	192361626	ubiG	CJA_2128	-	ubiquinone biosynthesis O-methyltransferase
2071	 51.93	0	2459989..2460660	+	223	192361308	-	CJA_2129	-	HAD-superfamily hydrolase, subfamily IA, variant 3
2072	 53.14	0	2460626..2461468	+	280	192360034	-	CJA_2130	-	oxidoreductase, short chain dehydrogenase/reductase family
2073	 55.83	0	2461525..2461893	-	122	192362190	-	CJA_2131	-	hypothetical protein
2074	 47.03	0	2461946..2462434	-	162	192362261	-	CJA_2132	-	CheW
2075	 53.51	0	2462592..2463602	-	336	192360049	-	CJA_2133	-	CheW domain protein
2076	 53.58	0	2463602..2464426	-	274	192359202	-	CJA_2134	-	ParA family protein
2077	 49.49	0	2464650..2465534	-	294	192361715	-	CJA_2135	-	hypothetical protein
2078	 49.40	0	2465545..2466291	-	248	192359153	-	CJA_2136	-	transporter, MotA/TolQ/ExbB proton channel family
2079	 51.21	0	2466291..2467448	-	385	192361671	cheB	CJA_2137	-	protein-glutamate methylesterase CheB
2080	 52.02	0	2467510..2469789	-	759	192360840	cheA	CJA_2138	-	histidine kinase
2081	 50.25	0	2469866..2470669	-	267	192360505	cheZ	CJA_2139	-	chemotaxis protein CheZ
2082	 46.09	-1	2470705..2471088	-	127	192359670	-	CJA_2140	-	CheY
2083	 54.44	0	2471307..2472050	-	247	192362157	-	CJA_2141	-	FliA
2084	 52.66	0	2472100..2472927	-	275	192360545	fleN	CJA_2142	-	flagellar number regulator FleN
2085	 56.63	0	2473112..2474695	-	527	192359435	flhF	CJA_2143	-	flagellar biosynthesis protein FlhF
2086	 54.55	0	2474741..2476951	-	736	192358815	flhA	CJA_2144	-	flagellar biosynthesis protein FlhA
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.