IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1908	 55.52	0	2279882..2280724	+	280	192358944	folD	CJA_1964	-	bifunctional protein 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase
1909	 55.56	0	2280759..2281523	+	254	192359752	-	CJA_1965	-	RNA pseudouridine synthase family protein
1910	 53.48	0	2281520..2282224	+	234	192361094	rsuA1	CJA_1966	-	ribosomal small subunit pseudouridine synthase A
1911	 54.00	0	2282205..2283278	+	357	192359393	-	CJA_1967	-	putative ribosomal RNA small subunit methyltransferase C
1912	 46.81	0	2283788..2284069	+	93	192360240	-	CJA_1969	-	hypothetical protein
1913	 51.71	0	2284173..2285750	-	525	192359387	-	CJA_1970	-	hydrolase, alpha/beta fold family domain protein
1914	 48.85	0	2285777..2286820	-	347	192360612	-	CJA_1971	-	pseudouridine synthase Rlu family protein
1915	 54.44	0	2286851..2287480	+	209	192359182	lacA	CJA_1972	-	acetyltransferase, CysE/LacA/LpxA/NodL family
1916	 49.87	0	2287514..2289055	+	513	192359733	-	CJA_1973	-	Ferredoxin-dependent glutamate synthase
1917	 47.11	0	2289083..2289670	+	195	192359652	-	CJA_1974	-	hypothetical protein
1918	 51.96	0	2289905..2290516	+	203	192362199	-	CJA_1975	-	Uncharacterized protein family UPF0016 family
1919	 46.90	0	2290610..2291029	-	139	192361258	-	CJA_1976	-	HIT-like protein
1920	 50.59	0	2291056..2291901	-	281	192359951	mal77A	CJA_1977	-	4-alpha-glucanotransferase, putative, mal77A
1921	 55.48	0	2291990..2292445	+	151	192359163	-	CJA_1978	-	YaiI/YqxD family protein superfamily
1922	 53.57	0	2292809..2294686	+	625	192361806	deaD-1	CJA_1979	-	ATP-dependent RNA helicase DeaD
1923	 45.04	-1	2294762..2295043	-	93	192362428	-	CJA_1980	-	hypothetical protein
1924	 55.11	0	2295057..2297990	-	977	192361560	hepA	CJA_1981	-	RNA polymerase-associated protein HepA
1925	 54.95	0	2298176..2299105	+	309	192360241	-	CJA_1982	-	aldose 1-epimerase family protein
1926	 53.56	0	2299174..2300157	-	327	192359373	mdh	CJA_1983	-	malate dehydrogenase
1927	 52.01	0	2300487..2302274	+	595	192360753	-	CJA_1985	-	sensory box/GGDEF family protein
1928	 47.44	0	2302271..2302894	-	207	192360191	dut	CJA_1984	-	dUTPase
1929	 53.36	0	2302933..2303736	-	267	192359359	-	CJA_1986	-	deoxyribonuclease, TatD family
1930	 50.33	0	2303741..2304040	-	99	192358962	-	CJA_1987	-	hypothetical protein
1931	 52.54	0	2304061..2304414	-	117	192361973	pilZ	CJA_1988	-	type 4 fimbrial biogenesis protein PilZ
1932	 59.76	+1	2304546..2305559	-	337	192360743	holB	CJA_1989	-	DNA polymerase III, delta prime subunit
1933	 53.15	0	2305563..2305673	-	36	192360430	-	CJA_1990	-	hypothetical protein
1934	 55.87	0	2305658..2306296	+	212	192358936	-	CJA_1991	-	ribosomal large subunit pseudouridine synthase A
1935	 53.94	0	2306477..2307631	+	384	192361643	-	CJA_1992	-	putative traF
1936	 55.45	0	2307713..2308354	-	213	192362258	tmk	CJA_1993	-	thymidylate kinase
1937	 47.76	0	2308439..2308930	+	163	192360620	ppiB-1	CJA_1994	-	peptidyl-prolyl cis-trans isomerase B
1938	 55.60	0	2308934..2309656	+	240	192361027	lpxH	CJA_1995	-	UDP-2,3-diacylglucosamine hydrolase
1939	 48.42	0	2309673..2310083	-	136	192361902	-	CJA_1996	-	hypothetical protein
1940	 51.89	0	2310150..2310758	-	202	192359353	miaE	CJA_1997	-	tRNA-(MS[2]IO[6]A)-hydroxylase subfamily
1941	 47.62	0	2310770..2311252	-	160	192361092	-	CJA_1998	-	hypothetical protein
1942	 51.72	0	2311259..2312890	-	543	192361391	tre37B	CJA_1999	-	trehalase, putative, tre37B
1943	 52.96	0	2312901..2313929	-	342	192362307	gnl	CJA_2000	-	gluconolactonase precursor
1944	 54.67	0	2314211..2316895	+	894	192360633	acnB	CJA_2001	-	aconitate hydratase 2
1945	 45.55	-1	2317050..2318915	-	621	192360723	-	CJA_2002	-	putative peptidyl-prolyl cis-trans isomerase D
1946	 49.45	0	2319146..2319418	-	90	192361790	-	CJA_2003	-	DNA-binding protein HU superfamily
1947	 47.35	0	2319663..2322080	-	805	192359285	lon	CJA_2004	-	ATP-dependent protease La
1948	 45.70	-1	2322219..2323520	-	433	192361200	clpX	CJA_2005	-	ATP-dependent Clp protease, ATP-binding subunit ClpX
1949	 46.67	-1	2323645..2324289	-	214	192360657	clpP	CJA_2006	-	ATP-dependent Clp protease, proteolytic subunit ClpP
1950	 48.63	0	2324459..2325772	-	437	192359587	tig	CJA_2007	-	trigger factor
1951	 49.35	0	2326073..2326609	-	178	192359147	-	CJA_2009	-	hypothetical protein
1952	 52.40	0	2326632..2329253	-	873	192360805	-	CJA_2010	-	putative DNA topoisomerase I
1953	 52.40	0	2329608..2330315	+	235	192361380	-	CJA_2013	-	hypothetical protein
1954	 55.21	0	2329614..2329709	-	31	192359518	-	CJA_2011	-	hypothetical protein
1955	 53.85	0	2330302..2330847	-	181	192362453	-	CJA_2012	-	hypothetical protein
1956	 56.36	0	2331001..2331456	+	151	192361362	-	CJA_2014	-	universal stress protein family
1957	 53.68	0	2331460..2333361	-	633	192361001	-	CJA_2015	-	ABC transporter, ATP-binding protein
1958	 53.33	0	2333451..2333615	-	54	192362069	-	CJA_2016	-	hypothetical protein
1959	 54.19	0	2333644..2335671	+	675	192358879	lmt23A	CJA_2017	-	lytic murein transglycosylase, putative, lmt23A
1960	 47.22	0	2335755..2336906	-	383	192359944	-	CJA_2018	-	ISCja2, transposase
1961	 43.17	-1	2337048..2337413	-	121	192359855	-	CJA_2019	-	hypothetical protein
1962	 48.96	0	2337486..2338400	-	304	192362347	-	CJA_2020	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type domain protein
1963	 53.58	0	2338442..2339419	-	325	192359409	-	CJA_2021	-	HPP family
1964	 47.92	0	2339456..2339551	+	31	192360192	-	CJA_2022	-	hypothetical protein
1965	 56.81	0	2339614..2339826	+	70	192359964	-	CJA_2023	-	hypothetical protein
1966	 54.41	0	2339798..2342089	+	763	192361277	-	CJA_2024	-	copper-translocating P-type ATPase
1967	 53.01	0	2342103..2342600	+	165	192360943	hmrR2	CJA_2025	-	MerR-family transcriptional regulator
1968	 50.51	0	2343124..2344485	+	453	192361982	-	CJA_2026	-	outer membrane efflux protein
1969	 54.44	0	2344478..2345884	+	468	192359541	-	CJA_2027	-	multicopper oxidase
1970	 51.16	0	2345963..2346091	-	42	192360608	-	CJA_2028	-	hypothetical protein
1971	 45.34	-1	2346119..2347609	-	496	192359736	-	CJA_2029	-	possible msrA, pms peptide methionine sulfoxide reductase
1972	 41.77	-1	2347602..2347850	+	82	192360809	narB	CJA_2030	-	assimilatory nitrate reductase
1973	 53.64	0	2347907..2349940	+	677	192361896	prrA	CJA_2031	-	TonB-dependent outer membrane receptor
1974	 54.52	0	2349950..2351233	+	427	192359195	-	CJA_2032	-	putative regulatory lipoprotein
1975	 53.13	0	2351230..2352588	+	452	192360638	-	CJA_2033	-	Predicted thiol oxidoreductase
1976	 48.15	0	2352635..2352796	+	53	192361244	-	CJA_2034	-	hypothetical protein
1977	 50.35	0	2352802..2354217	-	471	192361602	-	CJA_2035	-	putative lipoprotein
1978	 53.30	0	2354217..2356961	-	914	192359989	-	CJA_2036	-	hypothetical protein
1979	 47.21	0	2357001..2357663	-	220	192359391	-	CJA_2037	-	hypothetical protein
1980	 55.30	0	2357811..2359226	+	471	192361619	pabB	CJA_2038	-	para-aminobenzoate synthase, component I
1981	 54.85	0	2359290..2360042	+	250	192360836	-	CJA_2039	-	carboxymethylenebutenolidase
1982	 53.27	0	2360120..2362060	-	646	192360162	pel10B	CJA_2040	-	pectate lyase, putative, pel10B
1983	 49.51	0	2362251..2362868	-	205	192361644	-	CJA_2041	-	phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein
1984	 52.07	0	2363078..2363803	+	241	192362414	cysH	CJA_2042	-	3'-phosphoadenylylsulfate reductase
1985	 54.82	0	2363816..2364448	-	210	192361568	-	CJA_2043	-	protein-methionine-S-oxide reductase
1986	 48.77	0	2364514..2365608	-	364	192359025	-	CJA_2044	-	possible protease SohB
1987	 48.62	0	2365643..2366296	-	217	192362022	-	CJA_2045	-	hypothetical protein
1988	 53.29	0	2366346..2367227	-	293	192362038	-	CJA_2046	-	hydrolase, NUDIX family
1989	 50.09	0	2367257..2368963	-	568	192360329	-	CJA_2047	-	PA1822-like protein
1990	 53.36	0	2369200..2369913	-	237	192359256	dnaQ	CJA_2048	-	DNA polymerase III, epsilon subunit
1991	 55.40	0	2369988..2370422	-	144	192361631	rnhA	CJA_2049	-	RNase H
1992	 54.53	0	2370397..2371302	-	301	192360820	-	CJA_2050	-	Generic methyl-transferase
1993	 48.96	0	2371390..2371485	-	31	192359473	-	CJA_2051	-	hypothetical protein
1994	 54.25	0	2371608..2372243	+	211	192362517	-	CJA_2052	-	hydroxyacylglutathione hydrolase
1995	 51.99	0	2372453..2374012	+	519	192361254	lmt23B	CJA_2053	-	lytic murein transglycosylase, putative, lmt23B
1996	 51.67	0	2374082..2375695	-	537	192362004	-	CJA_2054	-	peptide ABC transporter, ATP-binding protein
1997	 48.19	0	2375700..2376581	-	293	192359661	oppC	CJA_2055	-	oligopeptide ABC transporter, permease protein
1998	 50.64	0	2376581..2377516	-	311	192360499	oppB	CJA_2056	-	oligopeptide transport system permease protein oppB
1999	 47.29	0	2377528..2378265	-	245	192361776	-	CJA_2057	-	oligopeptide ABC transporter periplasmic oligopeptide-binding protein
2000	 49.56	0	2378235..2379134	-	299	192358787	-	CJA_2058	-	oligopeptide ABC transporter periplasmic oligopeptide-binding protein
2001	 46.87	0	2379215..2381305	-	696	192360108	-	CJA_2059	-	Peptidase family M3
2002	 49.84	0	2381678..2382295	+	205	192360904	-	CJA_2060	-	hypothetical protein
2003	 47.47	0	2382309..2383277	+	322	192362269	-	CJA_2061	-	sensory box/GGDEF family protein
2004	 40.74	-2	2383367..2383501	-	44	192359682	-	CJA_2062	-	hypothetical protein
2005	 48.45	0	2383574..2384122	-	182	192360455	uvs015	CJA_2063	-	Uvs015
2006	 51.41	0	2384115..2386133	-	672	192360395	ccmF	CJA_2064	-	cytochrome c-type biogenesis protein CcmF
2007	 51.18	0	2386123..2386587	-	154	192361384	-	CJA_2065	-	CycJ
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.